View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3545_low_86 (Length: 214)
Name: NF3545_low_86
Description: NF3545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3545_low_86 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 16 - 194
Target Start/End: Complemental strand, 49265761 - 49265583
Alignment:
| Q |
16 |
tagcaaaggggttggaatatatgcataaggcaaatccccctgtgatatatagagacttaaagtcatccaacgtccttctcggtgaaaattatcatgccaa |
115 |
Q |
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| T |
49265761 |
tagcaaaggggttggaatatatgcataaggcaaatccccctgtgatatatagagacttaaagtcatccaacgtccttctcggtgaaaattatgatgccaa |
49265662 |
T |
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| Q |
116 |
gttatcagattttgggtttgcaaaacttggaccaattggtgatatgactcatgtatccacacaagtagtgggaacatat |
194 |
Q |
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| T |
49265661 |
gttatcagattttgggttcgcaaaacttggaccaattggtgatatgactcatgtatccacacaagtagtgggaacatat |
49265583 |
T |
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Target: chr2 (Bit Score: 79; Significance: 4e-37; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 17 - 194
Target Start/End: Original strand, 6603523 - 6603703
Alignment:
| Q |
17 |
agcaaaggggttggaatatatgcat---aaggcaaatccccctgtgatatatagagacttaaagtcatccaacgtccttctcggtgaaaattatcatgcc |
113 |
Q |
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| T |
6603523 |
agcaaagggattggaatacttgcatgacaaggcaaatccccctgtgatctatagagacttaaaatcatctaacatcctcctagatgaaggttttcatccc |
6603622 |
T |
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| Q |
114 |
aagttatcagattttgggtttgcaaaacttggaccaattggtgatatgactcatgtatccacacaagtagtgggaacatat |
194 |
Q |
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| T |
6603623 |
aagttatcagattttgggctggcaaaacttggtccagttggtgataagactcatgtatccacacgtgtaatgggaacatat |
6603703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 194
Target Start/End: Original strand, 40923808 - 40923899
Alignment:
| Q |
103 |
attatcatgccaagttatcagattttgggtttgcaaaacttggaccaattggtgatatgactcatgtatccacacaagtagtgggaacatat |
194 |
Q |
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| T |
40923808 |
attatcatcccaagttatccgattttggcttggcaaaagtaggtccaatcggtgatatgactcatgtttcaacaagagttatgggaacatat |
40923899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 194
Target Start/End: Original strand, 13172350 - 13172441
Alignment:
| Q |
103 |
attatcatgccaagttatcagattttgggtttgcaaaacttggaccaattggtgatatgactcatgtatccacacaagtagtgggaacatat |
194 |
Q |
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| T |
13172350 |
attatcatcccaagttatctgatttcggcttggcaaaagtaggtccaattggtgataagactcatgtgtcaacaagggtaatgggaacatat |
13172441 |
T |
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