View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3545_low_87 (Length: 213)
Name: NF3545_low_87
Description: NF3545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3545_low_87 |
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Alignment Details
Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 33801910 - 33802108
Alignment:
| Q |
1 |
tctggatgtgacatggtggtacaatagtgatggtcgaatacgtggtagatacatagtgatcacataagagttttttacaaaattaggatataaactgagc |
100 |
Q |
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| T |
33801910 |
tctggatgtgacatggtggtacaatagtggtggtcgaatacgtggtagatacatagtgatcacagaagagttttttacaaaattaggatataaattgagc |
33802009 |
T |
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| Q |
101 |
actatatatctaccac--ataaatattttgttaaactatctttcgcttattcttttttacacaatatctcactactcttaacaattaaattatttttat |
197 |
Q |
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| T |
33802010 |
actatgtatctatcacttataaacattttgttaaactatatttcgcttattcttttttacacaatatctcactactcttaacaattaaattatttttat |
33802108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 33730632 - 33730809
Alignment:
| Q |
1 |
tctggatgtgacatggtggtacaatagtgatggtcgaatacgtggtagatacatagtgatcacataagagttttttacaaaattaggatataaactgagc |
100 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
33730632 |
tctggatgtgacatggtggtacaatagtggtggtcgaatacgtggtagatacatagtgatcacagaagagttctttacaaaattaggatataaactgagc |
33730731 |
T |
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| Q |
101 |
actatatatctaccac--ataaatattttgttaaactatctttcgcttattcttttttacacaatatctcactactct |
176 |
Q |
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| T |
33730732 |
actatgtatctaccacttataaacattttgttaaactatattttgctaattattttttacacaatatctcactactct |
33730809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 3 - 196
Target Start/End: Complemental strand, 34284387 - 34284191
Alignment:
| Q |
3 |
tggatgtgacatgg-tggtacaatagtgatggtcgaatacgtggtagatacatagtgatcacataagagttttttacaaaattaggatataaactgagca |
101 |
Q |
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| T |
34284387 |
tggatgtaacatgggtggtacaatagtggtggtcgaataagtggtagatacatagtggtcacaaaagagttctttacaaaattaggatataagctgagca |
34284288 |
T |
|
| Q |
102 |
ctatatatctaccac--ataaatattttgttaaactatctttcgcttattcttttttacacaatatctcactactcttaacaattaaattattttta |
196 |
Q |
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| T |
34284287 |
ttatgtatctaacacttataaacattttgttaaactatattttgcttattctttttgacacaacatctcactactcttaacaattaaattattttta |
34284191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 4 - 172
Target Start/End: Complemental strand, 6152845 - 6152672
Alignment:
| Q |
4 |
ggatgtgacatg---gtggtacaatagtgatggtcgaatacgtggtagatacatagtgatcacataagagttttttacaaaattaggatataaactgagc |
100 |
Q |
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|||||||||||| |||||| ||||||| |||||||||| ||||||||||||| ||| ||| | || |||| |||| ||||||||||||||| |||| |
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| T |
6152845 |
ggatgtgacatgagtgtggtataatagtggtggtcgaataagtggtagatacatggtgctcaaaaaatagttctttataaaattaggatataagatgaga |
6152746 |
T |
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| Q |
101 |
actatatatctaccac--ataaatattttgttaaactatctttcgcttattcttttttacacaatatctcacta |
172 |
Q |
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|||||||||||||||| ||||| ||||| |||| |||| |||| |||||||| ||| |||||||||||||||| |
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| T |
6152745 |
actatatatctaccacttataaacattttattaatctatatttcacttattctctttaacacaatatctcacta |
6152672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 33 - 172
Target Start/End: Original strand, 34282227 - 34282374
Alignment:
| Q |
33 |
gtcgaatacgtggtagatacatagtgatcacataagagtttttta--caaaattaggatataaactgagcactatatatctacc----ac--ataaatat |
124 |
Q |
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|||||||| ||||||||||||| ||| ||||| ||||||| |||| |||||||| ||||||| | ||||||||||||||||| || ||||| || |
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| T |
34282227 |
gtcgaataagtggtagatacatggtgctcacaaaagagttctttaaacaaaattacgatataagttaagcactatatatctacctaccactaataaacat |
34282326 |
T |
|
| Q |
125 |
tttgttaaactatctttcgcttattcttttttacacaatatctcacta |
172 |
Q |
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||||||||||||| |||| |||||||||||| ||||| |||||||||| |
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| T |
34282327 |
tttgttaaactatatttcacttattctttttcacacagtatctcacta |
34282374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 116
Target Start/End: Complemental strand, 6146564 - 6146522
Alignment:
| Q |
74 |
tttacaaaattaggatataaactgagcactatatatctaccac |
116 |
Q |
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||||||||||||||||||||| | |||||||| |||||||||| |
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| T |
6146564 |
tttacaaaattaggatataaagtaagcactatgtatctaccac |
6146522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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