View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3545_low_9 (Length: 593)
Name: NF3545_low_9
Description: NF3545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3545_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 57 - 585
Target Start/End: Complemental strand, 17550018 - 17549490
Alignment:
| Q |
57 |
gtcttgtaaaaagagaccactaatgtatattttgatgacatgaaaatgagttgataatccaccaagatactatcacattatcaacttataaatgctttgc |
156 |
Q |
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| T |
17550018 |
gtcttgtaaaaagagagcactaatgtatattttgatgacatgaaaatgagttgataatccaccaagatactatcacattatcaacttataaatgctttcc |
17549919 |
T |
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| Q |
157 |
acaa--cnnnnnnnnnnnnncttaaatgctaccttatcatatacgatatacgtgataaaattcaaccccaaatgcgtaagtgggggaataaagtaataaa |
254 |
Q |
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|||| | |||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||| || ||||||||||| |
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| T |
17549918 |
acaaaacaaaaacaaaaaaacttaaatgctaccttatcatatactagatacgtgataaaattcaaccccaaatt-gtaagtggggaaa-aaagtaataaa |
17549821 |
T |
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| Q |
255 |
atttaaaaatccttgatgaggtaaaacaaaggattatacattcaataaaaaatttctctatgtttcatttggtggctataaatacatccattgttaggta |
354 |
Q |
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| T |
17549820 |
atttaaaaatgcttaatgaggtaaaacaaaggattatacgttcaataaaaaatttctctatgtttcatttggtggctataaatacatcaattgttaggta |
17549721 |
T |
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| Q |
355 |
tttgccaaatacatctaacttagtaacaaacaaagcaaaaatgaataaatcatgcaaagctattgcatgtttttggcttatgagtttcttaaatttgagt |
454 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17549720 |
tttgccaaatacatctaacttagtaacaaacaaagcaaaaatgaataaatcatgtagagctattgcatgtttttggcttatgagtttcttaaatttgagt |
17549621 |
T |
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| Q |
455 |
gtggctgaacctattagccctaaactgaccccatatttttacaggacaacgtgccctgatgtttttacaatagttagaagagaggttcttaatgcaataa |
554 |
Q |
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| T |
17549620 |
gtggctgaacctatgagccctaaactgaccccatatttttacaggacaacgtgccctgatgtttttacaatagttagaagagaggttcttaatgcaataa |
17549521 |
T |
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| Q |
555 |
atgaagagattcgaatggctgctcctttgct |
585 |
Q |
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| T |
17549520 |
atgaagagattcgaatggctgcttctttgct |
17549490 |
T |
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