View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3546_high_10 (Length: 513)
Name: NF3546_high_10
Description: NF3546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3546_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 369; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 22 - 504
Target Start/End: Complemental strand, 10689616 - 10689128
Alignment:
| Q |
22 |
tttgccgttcaaaagtgcatcaagaagttactactgctgaggatttgg--ggg----agatccggagacagcgatattctgatgttgataatagtccaga |
115 |
Q |
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| T |
10689616 |
tttgcagttcaaaagtggatcaagaagttactatctctgaggatttggttgggctgaagacccggagacagcgatcttatgatgttgataatagtccaga |
10689517 |
T |
|
| Q |
116 |
atctttactcgtttttagtggaaacaacaatgtgcatagtttatacgacctattactgaattacaaaactctattaacctcgctatccggtgtggaagat |
215 |
Q |
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| T |
10689516 |
atctttgctcgtttttagtggaaacaacaatgtgcatggtttatacgacctattactaaattacaaaactctattggcctcgctgtccggtgtggaagat |
10689417 |
T |
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| Q |
216 |
gtacctgtcttgtgttctcctgttccattccaaaattatgctatgacttctcctgatattaaatgcatggaaacgacaagagctgaaaacattgcacaag |
315 |
Q |
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| T |
10689416 |
gtacctgtcttgtgttctcctgttccattccaaaattctgctatgacttctcctgatattaaatgcatggagatgacaagagctgaagatattgcacaag |
10689317 |
T |
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| Q |
316 |
gatcatcaaatggtcttttttatagcattgaagttaaggatgcaattattccaccatggattatctgcaatatatgtgcattgatgatgggatcccaagg |
415 |
Q |
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| T |
10689316 |
gatcatcaaatgaccttttttatagcattgaagttaaggatgcaattattccaccgtggattatctgcaatatatgtgcattgatgatgggatcccaagg |
10689217 |
T |
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| Q |
416 |
gagaagaaactttgaggcaagttttgtgactgaaccactctcaattggcctcaatgtcgctttgaaatcaatttgtgataattcctttg |
504 |
Q |
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| T |
10689216 |
gagaagaaactttgaggcaagttttgtgactgaaccactctcaattggcctcaatgttgctttgaaatcaatttgtgataattcctttg |
10689128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 307 - 401
Target Start/End: Original strand, 43559255 - 43559349
Alignment:
| Q |
307 |
ttgcacaaggatcatcaaatggtcttttttatagcattgaagttaaggatgcaattattccaccatggattatctgcaatatatgtgcattgatg |
401 |
Q |
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| T |
43559255 |
ttgcacaaggatcatcagatggtcttttatgtagcattgaaattaaggatacatttattccaccttggattatcagccgtatatgtgcattgatg |
43559349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 93 - 180
Target Start/End: Original strand, 43558645 - 43558732
Alignment:
| Q |
93 |
tctgatgttgataatagtccagaatctttactcgtttttagtggaaacaacaatgtgcatagtttatacgacctattactgaattaca |
180 |
Q |
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| T |
43558645 |
tctgacgttgataatagcccagaatcattgctggttttcagtggcagcaacaatgtgcatggcttatttgacctattactgaattaca |
43558732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 219 - 272
Target Start/End: Original strand, 43558882 - 43558935
Alignment:
| Q |
219 |
cctgtcttgtgttctcctgttccattccaaaattatgctatgacttctcctgat |
272 |
Q |
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| T |
43558882 |
cctgtcttgtgttctcctgttccgttccaaagttctgctttgacttctcctgat |
43558935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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