View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3546_high_13 (Length: 502)
Name: NF3546_high_13
Description: NF3546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3546_high_13 |
 | |
|
| [»] scaffold0101 (1 HSPs) |
| | |
|
| [»] scaffold0368 (1 HSPs) |
| | |
|
| [»] scaffold0699 (2 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 116 - 393
Target Start/End: Original strand, 38566436 - 38566718
Alignment:
| Q |
116 |
aagtctctgttgtcaatagcaaccgaacgcggcgcggt-----caaaaacaacaaagcgcgacacagtgctccaacacggagtgtttggagaaagcggat |
210 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||| |
|
|
| T |
38566436 |
aagtctctgttgtcaatagcagccgaacgcggcgcggagcggccaaaaacaacaaagcgcgacacagttctccaacgcggagcgtttggagaaagcggat |
38566535 |
T |
|
| Q |
211 |
gaagcgggcgcaattgcgggcaaaagcgggcgcgatgcgggtcaaagcgggcgcttttgacaaccctatgtaaaatactagatttcccttcatttaaaac |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
38566536 |
gaagcgggcgcaattgcgggcaaaagcgggcgcgatgcgggtcaaagcgggcgcttttgancaccctgtgtaaaatactagatttcccttcatttaaaac |
38566635 |
T |
|
| Q |
311 |
cgttttaagggtcatttttataattttcaaaaccttaactattactcttctccaccagaaccaaatacgcagccacaaactca |
393 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38566636 |
cgttttaagggtcatttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaatacacagccacaaactca |
38566718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 125 - 393
Target Start/End: Complemental strand, 43823757 - 43823489
Alignment:
| Q |
125 |
ttgtcaatagcaaccgaacgcggcgcggtcaaaaacaacaaagcgcgacacagtgctccaacacggagtgtttggagaaagcggatgaagcgggcgcaat |
224 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
43823757 |
ttgtcaatagcggccgaacgcggcgcggccaaaaacaacaaagcgcgacacagtgctccaacgcggagcatttggagaaagcggatgaagcgggcgcaat |
43823658 |
T |
|
| Q |
225 |
tgcgggcaaaagcgggcgcgatgcgggtcaaagcgggcgcttttgacaaccctatgtaaaatactagatttcccttcatttaaaaccgttttaagggtca |
324 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
43823657 |
tgcgggcaaaagcgggcgcgatgcgggtcaaagcgggcgcttttgacaaccctgtgtaaattactagatttcccttcatttaaacccgttttaagggtcg |
43823558 |
T |
|
| Q |
325 |
tttttataattttcaaaaccttaactattactcttctccaccagaaccaaatacgcagccacaaactca |
393 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
43823557 |
tttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaatacacagccacaaactca |
43823489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 120 - 393
Target Start/End: Original strand, 39759219 - 39759497
Alignment:
| Q |
120 |
ctctgttgtcaatagcaaccgaacgcggcgcggt-----caaaaacaacaaagcgcgacacagtgctccaacacggagtgtttggagaaagcggatgaag |
214 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
39759219 |
ctctgttgtcaatagcggccgaacgcggcgcggagcggccaaaaacaacaaagcgcgacacagtactccaacgcggagcgtttggagaaagcggatgaag |
39759318 |
T |
|
| Q |
215 |
cgggcgcaattgcgggcaaaagcgggcgcgatgcgggtcaaagcgggcgcttttgacaaccctatgtaaaatactagatttcccttcatttaaaaccgtt |
314 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
39759319 |
cgggcgcaattgcgggcaaaagcgggcgcaatgcgggtcaaagtgggcgcttttgacaaccctgtgtgaaatactagatttcccttcatttaaaaccgtt |
39759418 |
T |
|
| Q |
315 |
ttaagggtcatttttataattttcaaaaccttaactattactcttctccaccagaaccaaatacgcagccacaaactca |
393 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
39759419 |
ttaagggtcatttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaatacacagccacaaactca |
39759497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 120 - 276
Target Start/End: Original strand, 43067862 - 43068019
Alignment:
| Q |
120 |
ctctgttgtcaatagcaaccgaacgcggcgcggtcaaaaacaacaaagcgcgacacagtgctccaacacggagtgtttggagaaagcggatgaagcgggc |
219 |
Q |
| |
|
|||||||||||||||| ||||| ||| |||| ||||| ||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
43067862 |
ctctgttgtcaatagcggccgaaggcgacgcgaccaaaaccaacaaagcgcgacattgtgctccaacgcggagcgtttggagaaagcggatgaagcgggc |
43067961 |
T |
|
| Q |
220 |
gcaattgc-gggcaaaagcgggcgcgatgcgggtcaaagcgggcgcttttgacaaccc |
276 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43067962 |
gcaattgcggggcaaaagcgggcgcgatgcgggtcaaagcgggcgcttttgacaaccc |
43068019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 299 - 383
Target Start/End: Complemental strand, 53286516 - 53286434
Alignment:
| Q |
299 |
ttcatttaaaaccgttttaagggtcatttttataattttcaaaaccttaactattactcttctccaccagaaccaaatacgcagc |
383 |
Q |
| |
|
|||| ||||||||||||| ||| ||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
53286516 |
ttcacttaaaaccgtttttaggc-catttttgtaattttcaaaacct-aactattactcttctccatcagaaccaaatacacagc |
53286434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 171 - 268
Target Start/End: Complemental strand, 53286612 - 53286515
Alignment:
| Q |
171 |
gacacagtgctccaacacggagtgtttggagaaagcggatgaagcgggcgcaattgcgggca-aaagcgggcgcgatgcgggtcaaagcgggcgctttt |
268 |
Q |
| |
|
||||||| ||||||| ||||| ||||||||||||||| |||||||||||| |||||||| | ||||| || |||| ||||||||||||| ||||||| |
|
|
| T |
53286612 |
gacacagcgctccaaggcggagcgtttggagaaagcggctgaagcgggcgccattgcgggtataaagcttgctcgat-cgggtcaaagcggacgctttt |
53286515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 143 - 393
Target Start/End: Original strand, 7199099 - 7199349
Alignment:
| Q |
143 |
cgcggcgcggtcaaaaacaacaaagcgcgacacagtgctccaacacggagtgtttggagaaagcggatgaagcgggcgcaattgcgggcaaaagcgggcg |
242 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7199099 |
cgcggagcggccaaaaacaacaaagcgcgacacagtgctccaacgcggagcgtttggagaaagcggatgaagcgggcgcaattgcgggcaaaagcgggcg |
7199198 |
T |
|
| Q |
243 |
cgatgcgggtcaaagcgggcgcttttgacaaccctatgtaaaatactagatttcccttcatttaaaaccgttttaagggtcatttttataattttcaaaa |
342 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
7199199 |
cgatgcgggtcaaagcgggtgcttttgacaaccctgtgtaaaatactagatttcccttcatttaaaaccgttttaagggtcatttttgtaattttcaaaa |
7199298 |
T |
|
| Q |
343 |
ccttaactattactcttctccaccagaaccaaatacgcagccacaaactca |
393 |
Q |
| |
|
|| |||||||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
7199299 |
ccctaactattactcttctcctccagaaccaaatacacagccacaaactca |
7199349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 119 - 393
Target Start/End: Original strand, 55681848 - 55682127
Alignment:
| Q |
119 |
tctctgttgtcaatagcaaccgaacgcggcgcggtc-----aaaaacaacaaagcgcgacacagtgctccaacacggagtgtttggagaaagcggatgaa |
213 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||| | |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
55681848 |
tctctgttgtcaatagcggccgaacgtggcgcggaccggccaaaaacaacaaagcgcgacacagtgctccaacgcggagcgtttggagaaagcggatgaa |
55681947 |
T |
|
| Q |
214 |
gcgggcgcaattgcgggcaaaagcgggcgcgatgcgggtcaaagcgggcgcttttgacaaccctatgtaaaatactagatttcccttcatttaaaaccgt |
313 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
55681948 |
gcgggtgcaattgcggacaaaagcgggcgcgatgcaggtcaaagcgggcgcttttgacaaccctgtgtaaaatactagatttcccttcatttaaaaccgt |
55682047 |
T |
|
| Q |
314 |
tttaagggtcatttttataattttcaaaaccttaactattactcttctccaccagaaccaaatacgcagccacaaactca |
393 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
55682048 |
tttaagggtcatttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaatacacagccacaaactca |
55682127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 143 - 393
Target Start/End: Complemental strand, 51470337 - 51470087
Alignment:
| Q |
143 |
cgcggcgcggtcaaaaacaacaaagcgcgacacagtgctccaacacggagtgtttggagaaagcggatgaagcgggcgcaattgcgggcaaaagcgggcg |
242 |
Q |
| |
|
||||| |||| |||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
51470337 |
cgcggagcggccaaaaacaacaaagcgcgacgcagcgctccaacacggagcgtttggagaaagcggatgaagcgggcacaattgcgggcaaaagcgggcg |
51470238 |
T |
|
| Q |
243 |
cgatgcgggtcaaagcgggcgcttttgacaaccctatgtaaaatactagatttcccttcatttaaaaccgttttaagggtcatttttataattttcaaaa |
342 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
51470237 |
cgatgtgggtcaaagcgggcgcttttgacaaccctgtgtaaaatactagatttcccttcatttaaaaccgttttaagggtcatttttgtaattttcaaaa |
51470138 |
T |
|
| Q |
343 |
ccttaactattactcttctccaccagaaccaaatacgcagccacaaactca |
393 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
51470137 |
ccctaactattactcttctccaccagaaccaaatacacagccacaaactca |
51470087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 120 - 393
Target Start/End: Complemental strand, 37517748 - 37517481
Alignment:
| Q |
120 |
ctctgttgtcaatagcaaccgaacgcggcgcgg-----tcaaaaacaacaaagcgcgacacagtgctccaacacggagtgtttggagaaagcggatgaag |
214 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
37517748 |
ctctgttgtcaatagcggccgaacgcggcgcggagcggtcaaaaacagcaaagcgcgacacagtgctccaacgcggagcgtttggagaaagcggatgaag |
37517649 |
T |
|
| Q |
215 |
cgggcgcaattgcgggcaaaagcgggcgcgatgcgggtcaaagcgggcgcttttgacaaccctatgtaaaatactagatttcccttcatttaaaaccgtt |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||| ||||||||| ||| |
|
|
| T |
37517648 |
cgggcgcaattgcgggcaaaagcgggcgcgatg----------cgggcgcttttgacaaccctgtgtaaaatactaaatttcccttaatttaaaactgtt |
37517559 |
T |
|
| Q |
315 |
ttaagggtcatttttataattttcaaaaccttaactattactcttctccaccagaaccaaatacgcagccacaaactca |
393 |
Q |
| |
|
||||||||||||||| ||||||| |||||| |||||||||||||||||||||| | |||||||| |||||||||||||| |
|
|
| T |
37517558 |
ttaagggtcatttttgtaatttt-aaaaccctaactattactcttctccaccatagccaaatacacagccacaaactca |
37517481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 120 - 393
Target Start/End: Complemental strand, 37521964 - 37521697
Alignment:
| Q |
120 |
ctctgttgtcaatagcaaccgaacgcggcgcgg-----tcaaaaacaacaaagcgcgacacagtgctccaacacggagtgtttggagaaagcggatgaag |
214 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
37521964 |
ctctgttgtcaatagcggccgaacgcggcgcggagcggtcaaaaacagcaaagcgcgacacagtgctccaacgcggagcgtttggagaaagcggatgaag |
37521865 |
T |
|
| Q |
215 |
cgggcgcaattgcgggcaaaagcgggcgcgatgcgggtcaaagcgggcgcttttgacaaccctatgtaaaatactagatttcccttcatttaaaaccgtt |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||| ||||||||| ||| |
|
|
| T |
37521864 |
cgggcgcaattgcgggcaaaagcgggcgcgatg----------cgggcgcttttgacaaccctgtgtaaaatactaaatttcccttaatttaaaactgtt |
37521775 |
T |
|
| Q |
315 |
ttaagggtcatttttataattttcaaaaccttaactattactcttctccaccagaaccaaatacgcagccacaaactca |
393 |
Q |
| |
|
||||||||||||||| ||||||| |||||| |||||||||||||||||||||| | |||||||| |||||||||||||| |
|
|
| T |
37521774 |
ttaagggtcatttttgtaatttt-aaaaccctaactattactcttctccaccatagccaaatacacagccacaaactca |
37521697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 118 - 277
Target Start/End: Original strand, 20790077 - 20790241
Alignment:
| Q |
118 |
gtctctgttgtcaatagcaaccgaacgcggcgcggt-----caaaaacaacaaagcgcgacacagtgctccaacacggagtgtttggagaaagcggatga |
212 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||| ||| ||||| ||||||||||||||||||| |
|
|
| T |
20790077 |
gtctctgttgtcaatagcagccgaacgcggcgcggagcggccaaaaacaacaaagcgcgacacagcgctctaacgcggagcgtttggagaaagcggatga |
20790176 |
T |
|
| Q |
213 |
agcgggcgcaattgcgggcaaaagcgggcgcgatgcgggtcaaagcgggcgcttttgacaaccct |
277 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20790177 |
agcgggcgcaattgcgggcaaaagcggacgcgatgcgggtcaaagcgggcgcttttgacaaccct |
20790241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 283 - 393
Target Start/End: Complemental strand, 41055603 - 41055493
Alignment:
| Q |
283 |
aaatactagatttcccttcatttaaaaccgttttaagggtcatttttataattttcaaaaccttaactattactcttctccaccagaaccaaatacgcag |
382 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
41055603 |
aaatactagatttcccttcatttaaaaccgttttaagggtcatttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaatacacag |
41055504 |
T |
|
| Q |
383 |
ccacaaactca |
393 |
Q |
| |
|
||||||||||| |
|
|
| T |
41055503 |
ccacaaactca |
41055493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 234 - 390
Target Start/End: Complemental strand, 375124 - 374967
Alignment:
| Q |
234 |
aagcgggcgcgatgcgggtcaaagcgggcgcttttgacaaccctatgtaaaatactagatttccctt-catttaaaaccgttttaagggtcatttttata |
332 |
Q |
| |
|
|||||||||| ||| |||||||||||| ||||||| |||||||| |||||||||| |||||| |||| || ||||||||||||||||||||| |||| || |
|
|
| T |
375124 |
aagcgggcgcaatgtgggtcaaagcggacgctttttacaaccctgtgtaaaatacaagattttcctttcacttaaaaccgttttaagggtcaattttgta |
375025 |
T |
|
| Q |
333 |
attttcaaaaccttaactattactcttctccaccagaaccaaatacgcagccacaaac |
390 |
Q |
| |
|
|||||||||||| ||||||||||||||||| | || |||||||||| ||||| ||||| |
|
|
| T |
375024 |
attttcaaaaccataactattactcttctctatcataaccaaatacacagcctcaaac |
374967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 234 - 378
Target Start/End: Original strand, 49811618 - 49811762
Alignment:
| Q |
234 |
aagcgggcgcgatgcgggtcaaagcgggcgcttttgacaaccctatgtaaaatactagatttcccttcatttaaaaccgttttaagggtca-tttttata |
332 |
Q |
| |
|
|||||||||||||| |||| ||||||| ||||||| || |||| |||||||||| ||||| ||||||| ||||||||||||||||||||| ||||| || |
|
|
| T |
49811618 |
aagcgggcgcgatgtgggttaaagcggacgctttttactcccctgtgtaaaatacaagattgcccttcacttaaaaccgttttaagggtcattttttgta |
49811717 |
T |
|
| Q |
333 |
attttcaaaaccttaactattactcttctccaccagaaccaaatac |
378 |
Q |
| |
|
||||||||||| ||||||| |||||||||||| ||||||||||||| |
|
|
| T |
49811718 |
attttcaaaacgttaacta-tactcttctccatcagaaccaaatac |
49811762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 119 - 218
Target Start/End: Original strand, 42491002 - 42491101
Alignment:
| Q |
119 |
tctctgttgtcaatagcaaccgaacgcggcgcggtcaaaaacaacaaagcgcgacacagtgctccaacacggagtgtttggagaaagcggatgaagcggg |
218 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
42491002 |
tctctgttgtcaatagcggccgaacgcggcgcggccaaaaacaacaaagcacgacacagtgctccaacgcggagcgtttggagaaagcggatgaagcggg |
42491101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 299 - 390
Target Start/End: Original strand, 48236174 - 48236266
Alignment:
| Q |
299 |
ttcatttaaaaccgttttaagggtcattttta-taattttcaaaaccttaactattactcttctccaccagaaccaaatacgcagccacaaac |
390 |
Q |
| |
|
|||| ||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||| ||||| ||||| |
|
|
| T |
48236174 |
ttcacttaaacccgttttaagggtcattttttgtaattttcaaaaccctaactattactcttctccatcagaaccaaatacacagccgcaaac |
48236266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 154 - 224
Target Start/End: Complemental strand, 375182 - 375112
Alignment:
| Q |
154 |
caaaaacaacaaagcgcgacacagtgctccaacacggagtgtttggagaaagcggatgaagcgggcgcaat |
224 |
Q |
| |
|
|||||||| |||| |||||| || |||||||| ||||| |||||| |||||||| ||||||||||||||| |
|
|
| T |
375182 |
caaaaacagcaaaacgcgacgcaacgctccaacgcggagcgtttggcgaaagcggctgaagcgggcgcaat |
375112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 120 - 393
Target Start/End: Complemental strand, 52005131 - 52004853
Alignment:
| Q |
120 |
ctctgttgtcaatagcaaccgaacgcggcgcggt-----caaaaacaacaaagcgcgacacagtgctccaacacggagtgtttggagaaagcggatgaag |
214 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
52005131 |
ctctgttgtcaatagcggccgaacgcggcgcggagcggccaaaaacaacacagcgcgacacagtgctccaacgcggagcgtttggagaaagcggatgaag |
52005032 |
T |
|
| Q |
215 |
cgggcgcaattgcgggcaaaagcgggcgcgatgcgggtcaaagcgggcgcttttgacaaccctatgtaaaatactagatttcccttcatttaaaaccgtt |
314 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
52005031 |
cgggtgcaattgcgggcaaaagcgggcgcgatgcgggtcaaagcgggcgcttttgacaaccctgtgtaaaatactagattttccttcatttaaaaccgtt |
52004932 |
T |
|
| Q |
315 |
ttaagggtcatttttataattttcaaaaccttaactattactcttctccaccagaaccaaatacgcagccacaaactca |
393 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
52004931 |
ttaagggtcatttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaatacacagccacaaactca |
52004853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 149 - 393
Target Start/End: Complemental strand, 20010983 - 20010739
Alignment:
| Q |
149 |
gcggtcaaaaacaacaaagcgcgacacagtgctccaacacggagtgtttggagaaagcggatgaagcgggcgcaattgcgggcaaaagcgggcgcgatgc |
248 |
Q |
| |
|
|||| |||||||||||||||||||| ||| |||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
20010983 |
gcggccaaaaacaacaaagcgcgacgcagcgctccaacacggagcatttggagaaagcgtatgaagcgggcgcaattgcaggcaaaagcgggcgtgatgc |
20010884 |
T |
|
| Q |
249 |
gggtcaaagcgggcgcttttgacaaccctatgtaaaatactagatttcccttcatttaaaaccgttttaagggtcatttttataattttcaaaaccttaa |
348 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
20010883 |
gggtcaaagcgggcgcttttgacaaccctgtgtaaaatactagatttcccttcatttaaaaccgttttaagggtcatttttgtaattttcaaaaccctaa |
20010784 |
T |
|
| Q |
349 |
ctattactcttctccaccagaaccaaatacgcagccacaaactca |
393 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
20010783 |
ctattactcttctccaccagagccaaatacacagccacaaactca |
20010739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 237 - 393
Target Start/End: Original strand, 52539267 - 52539423
Alignment:
| Q |
237 |
cgggcgcgatgcgggtcaaagcgggcgcttttgacaaccctatgtaaaatactagatttcccttcatttaaaaccgttttaagggtcatttttataattt |
336 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
52539267 |
cgggcgcaatgcgggtcaaagcgggcgcttttgacaaccctgtgtaaaatactagatttcccttcatttaaaaccgttttaagggtcatttttgtaattt |
52539366 |
T |
|
| Q |
337 |
tcaaaaccttaactattactcttctccaccagaaccaaatacgcagccacaaactca |
393 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
52539367 |
tcaaaaccctaactattactcttctccaccagaaccaaatacacagccacaaactca |
52539423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 143 - 390
Target Start/End: Complemental strand, 42872867 - 42872619
Alignment:
| Q |
143 |
cgcggcgcggtcaaaaacaacaaagcgcgacacagtgctccaacacggagtgtttggagaaagcggatgaagcgggcgcaattgcgggca-aaagcgggc |
241 |
Q |
| |
|
||||| |||| |||||||| ||| |||||| ||| |||||||| ||||| ||||||||||||||| ||||||||| |||||| |||| | ||||||||| |
|
|
| T |
42872867 |
cgcggagcggccaaaaacagaaaaacgcgacgcagcgctccaacgcggagcgtttggagaaagcggctgaagcgggtgcaattacgggtataaagcgggc |
42872768 |
T |
|
| Q |
242 |
gcgatgcgggtcaaagcgggcgcttttgacaaccctatgtaaaatactagatttcccttcatttaaaaccgttttaagggtcatttttataattttcaaa |
341 |
Q |
| |
|
||||| |||||||||||||| ||||| |||||||| |||||||||| |||||||||||| |||||||| ||||||||||| ||||| ||||||||||| |
|
|
| T |
42872767 |
acgatgtgggtcaaagcgggcactttttacaaccctgtgtaaaatacaggatttcccttcacttaaaaccattttaagggtcttttttgtaattttcaaa |
42872668 |
T |
|
| Q |
342 |
accttaactattactcttctccaccagaaccaaatacgcagccacaaac |
390 |
Q |
| |
|
||| ||||||||||||||||||| ||||||||||||| ||||| ||||| |
|
|
| T |
42872667 |
accctaactattactcttctccatcagaaccaaatacacagccgcaaac |
42872619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 121 - 224
Target Start/End: Original strand, 52539168 - 52539276
Alignment:
| Q |
121 |
tctgttgtcaatagcaaccgaacgcggcgcggt-----caaaaacaacaaagcgcgacacagtgctccaacacggagtgtttggagaaagcggatgaagc |
215 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||| ||| |||| ||||| |||||||||||||||||||| | |
|
|
| T |
52539168 |
tctgttgtcaatagcggccgaacgcggcgcggagcggccaaaaacaacaaagcgcgacgcagcgctgcaacgcggagcgtttggagaaagcggatgaaac |
52539267 |
T |
|
| Q |
216 |
gggcgcaat |
224 |
Q |
| |
|
||||||||| |
|
|
| T |
52539268 |
gggcgcaat |
52539276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 121 - 393
Target Start/End: Complemental strand, 37369931 - 37369654
Alignment:
| Q |
121 |
tctgttgtcaatagcaaccgaacgcggcgcggt-----caaaaacaacaaagcgcgacacagtgctccaacacggagtgtttggagaaagcggatgaagc |
215 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
37369931 |
tctgttgtcaatagcggccgaacgcggcgcggagcggccaaaaacaacaaagcgcgacacagtgctccaacgcggagcgtttggagaaagcggatgaagc |
37369832 |
T |
|
| Q |
216 |
gggcgcaattgcgggcaaaagcgggcgcgatgcgggtcaaagcgggcgcttttgacaaccctatgtaaaatactagatttcccttcatttaaaaccgttt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
37369831 |
gggcgcaattgcgggcaaaagcgggcgcgatgcgggtcaaagcgggcgcttttgacaaccctgtgtaaaatactagatttcccttaatttaaaactgttt |
37369732 |
T |
|
| Q |
316 |
taagggtcatttttataattttcaaaaccttaactattactcttctccaccagaaccaaatacgcagccacaaactca |
393 |
Q |
| |
|
||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
37369731 |
taacggtcatttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaatacacagccacaaactca |
37369654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 122 - 393
Target Start/End: Original strand, 41992173 - 41992427
Alignment:
| Q |
122 |
ctgttgtcaatagcaaccgaacgcggcgcggt-----caaaaacaacaaagcgcgacacagtgctccaacacggagtgtttggagaaagcggatgaagcg |
216 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
41992173 |
ctgttgtcaatagcggccgaacgcggcgcggagcggccaaaaacaacaaagcgcgacacagcgctccaacgcggagtgtttggagaaagcggatga---- |
41992268 |
T |
|
| Q |
217 |
ggcgcaattgcgggcaaaagcgggcgcgatgcgggtcaaagcgggcgcttttgacaaccctatgtaaaatactagatttcccttcatttaaaaccgtttt |
316 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41992269 |
------------------agcgggcgcaatgcgggtcaaagcgggcgcttttgacaaccatgtgtaaaatactagatttcccttcatttaaaaccgtttt |
41992350 |
T |
|
| Q |
317 |
aagggtcatttttataattttcaaaaccttaactattactcttctccaccagaaccaaatacgcagccacaaactca |
393 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
41992351 |
aagggtcatttttgtaattttcaaaaccctaactattactcttctccaccataaccaaatacacagccacaaactca |
41992427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 119 - 208
Target Start/End: Complemental strand, 41020568 - 41020474
Alignment:
| Q |
119 |
tctctgttgtcaatagcaaccgaacgcggcgcggt-----caaaaacaacaaagcgcgacacagtgctccaacacggagtgtttggagaaagcgg |
208 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||| |
|
|
| T |
41020568 |
tctctgttgtcaatagcggccgaacgcggcgcggagcggccaaaaacaacaaagcgcgacacagtgctctaacgcggagcgtttggagaaagcgg |
41020474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 226 - 277
Target Start/End: Complemental strand, 41020477 - 41020426
Alignment:
| Q |
226 |
gcgggcaaaagcgggcgcgatgcgggtcaaagcgggcgcttttgacaaccct |
277 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
41020477 |
gcgggcaaaagcgggtgcgatgcgggtcaaagcgggcgcttttgacaaccct |
41020426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 119 - 393
Target Start/End: Complemental strand, 33458644 - 33458375
Alignment:
| Q |
119 |
tctctgttgtcaatagcaaccgaacgcggcgcggtcaaaaacaacaaagcgcgacacagtgctccaacacggagtgtttggagaaagcggatgaagcggg |
218 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| ||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
33458644 |
tctctgttgtcaatagcggccgaacgcggc-----caaaaacaacaaagcgcgacacagcgctctaacgcggagcgtttggagaaagcggatgaagcggg |
33458550 |
T |
|
| Q |
219 |
cgcaattgcgggcaaaagcgggcgcgatgcgggtcaaagcgggcgcttttgacaaccctatgtaaaatactagatttcccttcatttaaaaccgttttaa |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
33458549 |
cgcaattgcgggcaaaagcgggcgcgatgcgggtcaaagcgggcgcttttgacaaccctgtgtaaaatactagatttcccttcatttaaaaccgttttga |
33458450 |
T |
|
| Q |
319 |
gggtcatttttataattttcaaaaccttaactattactcttctccaccagaaccaaatacgcagccacaaactca |
393 |
Q |
| |
|
||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
33458449 |
gggtcatttttgtaattttcaaaaccctgactattactcttctccaccagaaccaaatacacagccacaaactca |
33458375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 157 - 393
Target Start/End: Complemental strand, 34479191 - 34478955
Alignment:
| Q |
157 |
aaacaacaaagcgcgacacagtgctccaacacggagtgtttggagaaagcggatgaagcgggcgcaattgcgggcaaaagcgggcgcgatgcgggtcaaa |
256 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
34479191 |
aaacaacaaagcgcgacaaagtgctccaacgcggagcgtttggagaaagcggatgaagcagacgcaattgcgggcaaaagcgggagcgatgcgggtcaaa |
34479092 |
T |
|
| Q |
257 |
gcgggcgcttttgacaaccctatgtaaaatactagatttcccttcatttaaaaccgttttaagggtcatttttataattttcaaaaccttaactattact |
356 |
Q |
| |
|
|||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||| |
|
|
| T |
34479091 |
gcgggcacttttgacaaccctgtgtaaaatattagatttcccttcatttaaaaccgttttaagggtcatttttgtaattttcaaaaccctacctattact |
34478992 |
T |
|
| Q |
357 |
cttctccaccagaaccaaatacgcagccacaaactca |
393 |
Q |
| |
|
|||||||||| ||| ||||||| || ||||||||||| |
|
|
| T |
34478991 |
cttctccaccggaatcaaatacacatccacaaactca |
34478955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 179 - 268
Target Start/End: Original strand, 21472740 - 21472829
Alignment:
| Q |
179 |
gctccaacacggagtgtttggagaaagcggatgaagcgggcgcaattgcgggca-aaagcgggcgcgatgcgggtcaaagcgggcgctttt |
268 |
Q |
| |
|
||||||| ||||| ||||||||||||||| |||||||| ||| |||||||| | ||||||||||||||| |||| |||||| ||||||| |
|
|
| T |
21472740 |
gctccaaggcggagcgtttggagaaagcggctgaagcggtcgcgattgcgggtatcaagcgggcgcgatgctggtc-aagcggacgctttt |
21472829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0101 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: scaffold0101
Description:
Target: scaffold0101; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 155 - 393
Target Start/End: Original strand, 18596 - 18834
Alignment:
| Q |
155 |
aaaaacaacaaagcgcgacacagtgctccaacacggagtgtttggagaaagcggatgaagcgggcgcaattgcgggcaaaagcgggcgcgatgcgggtca |
254 |
Q |
| |
|
||||||||||||||||||| ||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18596 |
aaaaacaacaaagcgcgacgcagcgctccaacgcggagcatttggagaaagcggatgaagcgggcgcaattgcgggcaaaagcgggcgcgatgcgggtca |
18695 |
T |
|
| Q |
255 |
aagcgggcgcttttgacaaccctatgtaaaatactagatttcccttcatttaaaaccgttttaagggtcatttttataattttcaaaaccttaactatta |
354 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
18696 |
aagcgggcgcatttgacaaccctgtgtaaaatactagatttcccttcatttaaaaccgttttaagggtcatttttgtaattttcaaaaccctaactatta |
18795 |
T |
|
| Q |
355 |
ctcttctccaccagaaccaaatacgcagccacaaactca |
393 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
18796 |
ctcttctccaccagaaccaaatacacagccacaaactca |
18834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 120 - 393
Target Start/End: Complemental strand, 3288769 - 3288501
Alignment:
| Q |
120 |
ctctgttgtcaatagcaaccgaacgcggcgcggt-----caaaaacaacaaagcgcgacacagtgctccaacacggagtgtttggagaaagcggatgaag |
214 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||| |
|
|
| T |
3288769 |
ctctgttgtcaatagcagccgaacgcggcgcggagcggccaaaaacaacaaagcgcgacacagtgctccaacgctccgcgtttggagaaagcggatgaag |
3288670 |
T |
|
| Q |
215 |
cgggcgcaattgcgggcaaaagcgggcgcgatgcgggtcaaagcgggcgcttttgacaaccctatgtaaaatactagatttcccttcatttaaaaccgtt |
314 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
3288669 |
cgggcgcaattgtgggcaaaagcgggcgcgatgcggg----------cgcttttgacaaccctgtgtaaaatactagatttcccttcatttaaaaccgtt |
3288580 |
T |
|
| Q |
315 |
ttaagggtcatttttataattttcaaaaccttaactattactcttctccaccagaaccaaatacgcagccacaaactca |
393 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
3288579 |
ttaagggtcatttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaatacacagccacaaactca |
3288501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 299 - 383
Target Start/End: Original strand, 11843247 - 11843329
Alignment:
| Q |
299 |
ttcatttaaaaccgttttaagggtcatttttataattttcaaaaccttaactattactcttctccaccagaaccaaatacgcagc |
383 |
Q |
| |
|
|||| ||||||||||||| ||| ||||||| ||||||| ||||||| |||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
11843247 |
ttcacttaaaaccgtttttaggc-catttttgtaatttttaaaacct-aactattactcttctccatcagaaccaaatacacagc |
11843329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 161; Significance: 1e-85; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 143 - 393
Target Start/End: Complemental strand, 33516678 - 33516439
Alignment:
| Q |
143 |
cgcggcgcggtcaaaaacaacaaagcgcgacacagtgctccaacacggagtgtttggagaaagcggatgaagcgggcgcaattgcgggcaaaagcgggcg |
242 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
33516678 |
cgcggagcggccaaaaacaacaaagcgcgacacagtgcttcaacgcggagcgtttggagaaagcggatgaagcaggcgcaattgcgggcaaaagcggg-- |
33516581 |
T |
|
| Q |
243 |
cgatgcgggtcaaagcgggcgcttttgacaaccctatgtaaaatactagatttcccttcatttaaaaccgttttaagggtcatttttataattttcaaaa |
342 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
33516580 |
---------tcaaagcgggcgcttttagcaaccctgtgtaaaatactagatttcccttcatttaaaaccgttttaagggtcattttggtaattttcaaaa |
33516490 |
T |
|
| Q |
343 |
ccttaactattactcttctccaccagaaccaaatacgcagccacaaactca |
393 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
33516489 |
ccctaactattactcttctccaccagaaccaaatacacagccacaaactca |
33516439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 143 - 393
Target Start/End: Original strand, 11591322 - 11591557
Alignment:
| Q |
143 |
cgcggcgcggtcaaaaacaacaaagcgcgacacagtgctccaacacggagtgtttggagaaagcggatgaagcgggcgcaattgcgggcaaaagcgggcg |
242 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11591322 |
cgcggagcggccaaaaacaacaaagcgcgacacagtgcttcaacgcggagcgtttggagaaagcggatgaagcgggcgcaattgcgggct---------- |
11591411 |
T |
|
| Q |
243 |
cgatgcgggtcaaagcgggcgcttttgacaaccctatgtaaaatactagatttcccttcatttaaaaccgttttaagggtcatttttataattttcaaaa |
342 |
Q |
| |
|
|||| | || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
11591412 |
---tgcgaatgaa-gcgggcgcttttgacaaccctgtgtaaaatactagatttcccttcatttaaaaccgttttaagggtcatttttgtaatttttaaaa |
11591507 |
T |
|
| Q |
343 |
ccttaactattactcttctccaccagaaccaaatacgcagccacaaactca |
393 |
Q |
| |
|
|| ||||||||||||||||||| ||||||||||||| |||||||| ||||| |
|
|
| T |
11591508 |
ccctaactattactcttctcca-cagaaccaaatacacagccacagactca |
11591557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 278 - 393
Target Start/End: Complemental strand, 46067327 - 46067212
Alignment:
| Q |
278 |
atgtaaaatactagatttcccttcatttaaaaccgttttaagggtcatttttataattttcaaaaccttaactattactcttctccaccagaaccaaata |
377 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
46067327 |
atgtaaaatactagatttcccatcatttaaaaccgttttaagtgtcatttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaata |
46067228 |
T |
|
| Q |
378 |
cgcagccacaaactca |
393 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
46067227 |
cacagccacaaactca |
46067212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 17 - 117
Target Start/End: Complemental strand, 18103414 - 18103316
Alignment:
| Q |
17 |
agagagagtatgatatgttaggtaaaagaaaacatcaaatactcaaaaaagaatcatcatttgttttaaactttaaagagtaacttttacctatgaacaa |
116 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
18103414 |
agagagagtatgatttgttaggtaaaagaaaacatcaaatactcaaaa--gaatcatcatttgttttaaactttaaagagtaacttttacctacgaacaa |
18103317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 234 - 389
Target Start/End: Original strand, 48826736 - 48826891
Alignment:
| Q |
234 |
aagcgggcgcgat-gcgggtcaaagcgggcgcttttgacaaccctatgtaaaatactagatttcccttcatttaaaaccgttttaagggtcatttttata |
332 |
Q |
| |
|
|||||||||| || ||||||||||||||| |||||| || ||||||||||||||| || | ||||||| ||||||||||||||| | |||||||| || |
|
|
| T |
48826736 |
aagcgggcgcaattgcgggtcaaagcgggtgctttttactcccctatgtaaaatacgggactgcccttcacttaaaaccgttttaaag-tcatttttgta |
48826834 |
T |
|
| Q |
333 |
attttcaaaaccttaactattactcttctccaccagaaccaaatacgcagccacaaa |
389 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||||||||||| ||||| |||| |
|
|
| T |
48826835 |
attttcaaaaccctaactattactcttctccatcagaaccaaatacacagccgcaaa |
48826891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 313 - 393
Target Start/End: Original strand, 43613823 - 43613903
Alignment:
| Q |
313 |
ttttaagggtcatttttataattttcaaaaccttaactattactcttctccaccagaaccaaatacgcagccacaaactca |
393 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
43613823 |
ttttaagggtcatttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaatacacagccacaaactca |
43613903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 48826703 - 48826754
Alignment:
| Q |
179 |
gctccaacacggagtgtttggagaaagcggatgaagcgggcgcaattgcggg |
230 |
Q |
| |
|
||||||| ||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
48826703 |
gctccaaggcggagcgtttggagaaagcggctgaagcgggcgcaattgcggg |
48826754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0368 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: scaffold0368
Description:
Target: scaffold0368; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 143 - 390
Target Start/End: Original strand, 7722 - 7970
Alignment:
| Q |
143 |
cgcggcgcggtcaaaaacaacaaagcgcgacacagtgctccaacacggagtgtttggagaaagcggatgaagcgggcgcaattgcgggca-aaagcgggc |
241 |
Q |
| |
|
||||| |||| |||||||| ||| |||||| ||| |||||||| ||||| ||||||||||||||| ||||||||| |||||| |||| | ||||||||| |
|
|
| T |
7722 |
cgcggagcggccaaaaacagaaaaacgcgacgcagcgctccaacgcggagcgtttggagaaagcggctgaagcgggtgcaattacgggtataaagcgggc |
7821 |
T |
|
| Q |
242 |
gcgatgcgggtcaaagcgggcgcttttgacaaccctatgtaaaatactagatttcccttcatttaaaaccgttttaagggtcatttttataattttcaaa |
341 |
Q |
| |
|
||||| |||||||||||||| ||||| |||||||| |||||||||| |||||||||||| |||||||| ||| | || || ||||| ||||||||||| |
|
|
| T |
7822 |
acgatgtgggtcaaagcgggcactttttacaaccctgtgtaaaatacaggatttcccttcacttaaaaccatttaagggttcttttttgtaattttcaaa |
7921 |
T |
|
| Q |
342 |
accttaactattactcttctccaccagaaccaaatacgcagccacaaac |
390 |
Q |
| |
|
||| ||||||||||||||||||| ||||||||||||| ||||| ||||| |
|
|
| T |
7922 |
accctaactattactcttctccatcagaaccaaatacacagccgcaaac |
7970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0699 (Bit Score: 115; Significance: 3e-58; HSPs: 2)
Name: scaffold0699
Description:
Target: scaffold0699; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 216 - 393
Target Start/End: Complemental strand, 205 - 38
Alignment:
| Q |
216 |
gggcgcaattgcgggcaaaagcgggcgcgatgcgggtcaaagcgggcgcttttgacaaccctatgtaaaatactagatttcccttcatttaaaaccgttt |
315 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
205 |
gggcacaattgcgggcaaaagcgggcgcgatgcggc----------cgcttttgacaaccctgtgtaaaatactagatttcccttcatttaaaaccattt |
116 |
T |
|
| Q |
316 |
taagggtcatttttataattttcaaaaccttaactattactcttctccaccagaaccaaatacgcagccacaaactca |
393 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
115 |
taagggtcatttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaatacacagccacaaactca |
38 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0699; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 120 - 192
Target Start/End: Complemental strand, 283 - 206
Alignment:
| Q |
120 |
ctctgttgtcaatagcaaccgaacgcggcgcggt-----caaaaacaacaaagcgcgacacagtgctccaacacggag |
192 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
283 |
ctctgttgtcaatagcggccgaacgcggcgcggagcggccaaaaacaacaaagcgcggcacagtgctccaacgcggag |
206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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