View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3546_high_15 (Length: 463)
Name: NF3546_high_15
Description: NF3546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3546_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Complemental strand, 46987975 - 46987531
Alignment:
| Q |
1 |
aacagaggtatataattcgatcaagcacgatcaagacaaagacaaccttcaggataaactatttaagctgagtaactagacagaacaaatgccagattca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||| || |||||| | |||| ||||||||||||| ||||||| |||||||||||| |
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| T |
46987975 |
aacagaggtatataattcgatcaagcacgatcaagaaaaagacaacctgcaagataaagtttttatgctgagtaactagccagaacatatgccagattca |
46987876 |
T |
|
| Q |
101 |
aaaagttgatatccgttgggtgaatggatctagcagtggaatatattaaacgatatcatctttcacaaaaaatgaaatggacaagtttcgcatagaaaga |
200 |
Q |
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|||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46987875 |
aaaagttgatattcgttggttgaatggatctagcagtggaatatattaaactatatcatctttcacaaaaaatgaaatggacaagtttcgcatagaaaga |
46987776 |
T |
|
| Q |
201 |
aacaaccaagtttctgaaaatctatgaacacaagttatgtgagcccttggaagaaaagaaattagcagtcttctggtttnnnnnnnnnnnnnnnnnccaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
46987775 |
aacaaccaagtttctgaaaatctatgaacacaagttatgtgagcccttggaagaaaagaaattagcagtcttctggttt----tatatatatatatccaa |
46987680 |
T |
|
| Q |
301 |
acggatgaccctaactacccttcagcccatacgtctttttctttagaaacaccacagcttggtaatgggtttcttttcattatttgatgttctcttctgt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46987679 |
acggatgaccctaactacccttcagcccatacatctttttctttagaaacaccacagcttggtaatgggtttcttttcattatttgatgttctcttctgt |
46987580 |
T |
|
| Q |
401 |
tgttgnnnnnnngaggttaagattatctaatacttccccctgttctgtg |
449 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
46987579 |
tgttgaaaaaaagaggttaagattatctaatacttccccctgttctgtg |
46987531 |
T |
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