View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3546_high_20 (Length: 429)
Name: NF3546_high_20
Description: NF3546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3546_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 16 - 414
Target Start/End: Original strand, 43207520 - 43207918
Alignment:
| Q |
16 |
ataacaaaatatgaagtggtgcaaataaggttgaaacttgaaagacttgagatagaaatgactttgaagagttatatttataggagcagaaattaaagca |
115 |
Q |
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| T |
43207520 |
ataacaaaatatgaagtggtgcaaataaggttgaaacttgaaagacttgagatagaaatgactttgaagagttatatttataggagcagaaattaaagca |
43207619 |
T |
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| Q |
116 |
tatagttgtttcaagcagccataatttttattttattaatcagatacatgaattgctgtcttttgttgaaagtgaaagactatctttcagaaagtacttt |
215 |
Q |
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| T |
43207620 |
tatagttgtttcaagcagccataatttttattttattaatcagatacatgaattgctgtcttttgttgaaagtgaaagactatctttcagaaagtacttt |
43207719 |
T |
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| Q |
216 |
tggttacagaaaataaattataattatacacacatgcccatgactaaaagttttatacattaaccaaaaataacatgtaccaaaacatgcatagacaggg |
315 |
Q |
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| T |
43207720 |
tggttacagaaaataaattataattatacacacatgcccatgactaaaagttttatacattaaccaaaaataacatgtaccaaaacatgcatagacaggg |
43207819 |
T |
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| Q |
316 |
aattttaggagatatacctccagcttggaattgtttagttcttaaatcagattaaacaaaagtaatttactacaattcccacataagcaaagttaaaat |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
43207820 |
aattttaggagatatacctccagcttggaattgtttagttcttaaaacagattaaacaaaagtaatttactagaattcccacataagcaaagttaaaat |
43207918 |
T |
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