View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3546_high_23 (Length: 422)
Name: NF3546_high_23
Description: NF3546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3546_high_23 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 107 - 422
Target Start/End: Original strand, 23949363 - 23949678
Alignment:
| Q |
107 |
gggtttcaattgaactgacctatttcccttaatcttgaaccaagcctcagcacaattcttatgagcagcagctaaatcctctttacaagaacagcccaat |
206 |
Q |
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| T |
23949363 |
gggtttcaattgaactgacctatttcccttaatcttgaaccaagcctcggcacaattcttatgagcagcagctaaatcctctttacaagaacagcccaat |
23949462 |
T |
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| Q |
207 |
tcaattggaggaccagattcatggctttcactctccaaacccatatgacaaatcctacaatctttctccactttagccaaatgcaccttattctcaggaa |
306 |
Q |
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| T |
23949463 |
tcaattggaggaccagattcatggctttcactctccaaacccatatgacaaatcctacaatctttctccactttagccaaatgcaccttattctcaggaa |
23949562 |
T |
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| Q |
307 |
ccctctcaattctaatttcaacctcaacagaacaatcagaaacagaagaaactcttctagaatcatgaacacaaccaagttcaggatcagaaacacaagc |
406 |
Q |
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| T |
23949563 |
ccctctcaattctaatttcaacctcaacagaacaatcagaaacagaagaaactcttctagaatcatgaacacaaccaagttcaggatcagaaacacaagc |
23949662 |
T |
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| Q |
407 |
aaaagtgtaatcatca |
422 |
Q |
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| T |
23949663 |
aaaagtgtaatcatca |
23949678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 14 - 61
Target Start/End: Original strand, 23949272 - 23949319
Alignment:
| Q |
14 |
atcaacaaaagggtgtctaaattttatctaaaagcttcaaaatttatc |
61 |
Q |
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| T |
23949272 |
atcaacaaaagggtgtctaaattttatctaaaagcttcaaaatttatc |
23949319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 135 - 296
Target Start/End: Original strand, 34933754 - 34933915
Alignment:
| Q |
135 |
ttaatcttgaaccaagcctcagcacaattcttatgagcagcagctaaatcctctttacaagaacagcccaattcaattggaggaccagattcatggctt- |
233 |
Q |
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| T |
34933754 |
ttaatcttgaaccaagcctcagcacaatgcttatgagcagcagccaaatcatttttgcaaaaacaaccaagctccataggaattccagattcatggtttg |
34933853 |
T |
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| Q |
234 |
tcactctccaaacccatatgacaaatcctacaatctttctccactttagccaaatgcacctta |
296 |
Q |
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| T |
34933854 |
tca-tatccatactaagatgacaaatcctacaatccctctccaccttatccaaatgcacctta |
34933915 |
T |
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