View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3546_high_26 (Length: 404)
Name: NF3546_high_26
Description: NF3546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3546_high_26 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 394
Target Start/End: Original strand, 4231784 - 4232174
Alignment:
| Q |
1 |
gaacaacatgtgagtaaaatgttgatcctaatttgtttaggcaattagtaggatcattgaggtcccatgtcaaaggattctgaggcacaacaatggagca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
4231784 |
gaacaacatgtgagtaaaatgttgatcctaatttgtttaggcaattagtaggatcattgaggtaccatgtcaaaggattctgaggcacaacaatggagca |
4231883 |
T |
|
| Q |
101 |
gaatactatggcatcttattaagaaacaaagtgaattaaggacaagttgattattgattatttccctac-aactaattagtcgcaaatatcttcaccaaa |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
4231884 |
gaatactatggcatcttattaagaaacaaagtgaattaaggacaagttgattattgattatttccatacaaactaattagtcgcaaatatcttcaccaaa |
4231983 |
T |
|
| Q |
200 |
ccaatcaaaacggttcaatcccctcttctatgtttcaatgtatgatgatgtttgtgggacgaatatcccttgtacttcgttttgtttgtgggttaagttc |
299 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
4231984 |
ccaatcaaaacggttcaattccctcttctatgtttcaatgt---atgatgtttgtgggacgaatatcccttgtacttcatttcgtttgtgggttaagttc |
4232080 |
T |
|
| Q |
300 |
tttttgtacttctctcatcatctaataaatttttatgttnnnnnnnnngtttccattcatcaaactaagaagagaactaggtgttgtaacctttg |
394 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4232081 |
tttttatacttctctcatcttctaataaatttttatgtt-aaaaaaaagtttcaattcatcaaactaagaagagaactaggtgttgtaacctttg |
4232174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 330
Target Start/End: Complemental strand, 33810606 - 33810560
Alignment:
| Q |
284 |
tttgtgggttaagttctttttgtacttctctcatcatctaataaatt |
330 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||| | |||||||||||| |
|
|
| T |
33810606 |
tttgtgggttaagtactttttgtaattctctctttatctaataaatt |
33810560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 285 - 338
Target Start/End: Original strand, 9519444 - 9519497
Alignment:
| Q |
285 |
ttgtgggttaagttctttttgtacttctctcatcatctaataaatttttatgtt |
338 |
Q |
| |
|
|||| |||||||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
9519444 |
ttgtaggttaagttcactttgaacttctctcatcatctaataaatttttatgtt |
9519497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University