View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3546_high_31 (Length: 377)
Name: NF3546_high_31
Description: NF3546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3546_high_31 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: scaffold0013 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 21 - 367
Target Start/End: Complemental strand, 92910 - 92566
Alignment:
| Q |
21 |
tgaaataaattacttaattgagtgtttatctatctgattttcatctaagtttaatttcagctaaaatgtggtgctattgtcgactggtatacttaccgat |
120 |
Q |
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| T |
92910 |
tgaaataaattacttaattgagtgtttatctatctgattttcatctaagtttaatttcagctaaaatgtggtgctattgtcgactggtatacttaccgat |
92811 |
T |
|
| Q |
121 |
gtcttacttgtacggaaagaggtttgtcggtccaatcacaccactcatcttacagttgagagaagaacttcatactcaaccttatggtaaagttaactgg |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
92810 |
gtcttacttgtacggaaagaggtttgtcggtccaatcacaccactcgtcttacagttgagagaagaacttcatactcaaccttatggtaaagttaactgg |
92711 |
T |
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| Q |
221 |
aaaaaagcacgccacctatgtgcaaaggtgagactctttgtctctaattcatgacagtgtatatgaatttacacatctctttaacgtatgagggataatg |
320 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
92710 |
aaaaaagcacgccacctatgtgcaaaggtgaggctctttgtctctaattcatgacagtg--tatgaatttacacatctctttaacgtatgagggataatg |
92613 |
T |
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| Q |
321 |
gtccattttatgctcaacaggaagatatctactatcctcatcctttg |
367 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
92612 |
ttccattttatgctcaacaggaagatatctactatcctcatcctttg |
92566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 70 - 269
Target Start/End: Original strand, 103440 - 103639
Alignment:
| Q |
70 |
tttaatttcagctaaaatgtggtgctattgtcgactggtatacttaccgatgtcttacttgtacggaaagaggtttgtcggtccaatcacaccactcatc |
169 |
Q |
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| T |
103440 |
tttaattgcagctaaaatgtggtgttattgtcgattggtatacatgcctatgtcttacttgtacgggaagagatttgtgggtccgatcacaccactcatc |
103539 |
T |
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| Q |
170 |
ttacagttgagagaagaacttcatactcaaccttatggtaaagttaactggaaaaaagcacgccacctatgtgcaaaggtgagactctttgtctctaatt |
269 |
Q |
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|||||||||||||||||||| |||||||| ||||||| ||| ||||||||| ||| |||| ||||||||||||||||||||| || |||||| ||||| |
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| T |
103540 |
ttacagttgagagaagaactccatactcagccttatgaaaaaattaactggacgaaatcacgtcacctatgtgcaaaggtgagagtcattgtctttaatt |
103639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 49 - 367
Target Start/End: Original strand, 164386 - 164702
Alignment:
| Q |
49 |
tctatctgattttcatctaagtttaatttcagctaaaatgtggtgctattgtcgactggtatacttaccgatgtcttacttgtacggaaagaggtttgtc |
148 |
Q |
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||||||||||||||| || |||| || |||||||||||||||| |||||||| | |||||| | |||||||||||||||||||| ||||||||||| |
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| T |
164386 |
tctatctgattttcacctttgtttt-ttacagctaaaatgtggtgttattgtcggttagtatacatgccgatgtcttacttgtacgggaagaggtttgta |
164484 |
T |
|
| Q |
149 |
ggtccaatcacaccactcatcttacagttgagagaagaacttcatactcaaccttatggtaaagttaactggaaaaaagcacgccacctatgtgcaaagg |
248 |
Q |
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||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||| ||| |||| ||| |||| |||||||||||||||| |
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| T |
164485 |
ggtcctatcacaccactcatcttacagttgagagaagaactccatacccaaccttatgaaaaaactaattggacgaaatcacgtcacctatgtgcaaagg |
164584 |
T |
|
| Q |
249 |
tgagactctttgtctctaattcatgacagtgtatatgaatttacacat-ctctttaacgtatgagggataatggtccattttatg-ctcaacaggaagat |
346 |
Q |
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| ||| ||||| ||| ||||| || ||| || | |||| |||||||| || |||||| || ||||||||||| ||||||||||| ||| | |||||||| |
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| T |
164585 |
ttagagtctttatctttaattgatcacaatg--tgtgaaattacacatcctttttaacataggagggataatgatccattttatgtctc-ataggaagat |
164681 |
T |
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| Q |
347 |
atctactatcctcatcctttg |
367 |
Q |
| |
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| T |
164682 |
ctttactatccccatcctttg |
164702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 5e-44; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 78 - 252
Target Start/End: Complemental strand, 5722645 - 5722471
Alignment:
| Q |
78 |
cagctaaaatgtggtgctattgtcgactggtatacttaccgatgtcttacttgtacggaaagaggtttgtcggtccaatcacaccactcatcttacagtt |
177 |
Q |
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|||||| ||||| ||| ||||||||| |||||||| | || |||||||||||||| |||||||||||||||||||||||||||||| | |||||| |||| |
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| T |
5722645 |
cagctagaatgttgtgttattgtcgattggtatacatgcctatgtcttacttgtatggaaagaggtttgtcggtccaatcacaccattgatcttaaagtt |
5722546 |
T |
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| Q |
178 |
gagagaagaacttcatactcaaccttatggtaaagttaactggaaaaaagcacgccacctatgtgcaaaggtgag |
252 |
Q |
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| T |
5722545 |
gagagaagaactccttacagaaccttatgaaaaagttaattggcaaaaagtacgtcacctatgtgcaaaggtgag |
5722471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 78 - 252
Target Start/End: Complemental strand, 5670531 - 5670357
Alignment:
| Q |
78 |
cagctaaaatgtggtgctattgtcgactggtatacttaccgatgtcttacttgtacggaaagaggtttgtcggtccaatcacaccactcatcttacagtt |
177 |
Q |
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|||||| ||||| ||| ||||||||| |||||||| | || |||||||||||||| || |||||||||||||||||||| ||||||||||||||| |||| |
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| T |
5670531 |
cagctagaatgttgtgttattgtcgattggtatacatgcctatgtcttacttgtatgggaagaggtttgtcggtccaataacaccactcatcttaaagtt |
5670432 |
T |
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| Q |
178 |
gagagaagaacttcatactcaaccttatggtaaagttaactggaaaaaagcacgccacctatgtgcaaaggtgag |
252 |
Q |
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|||||||||||| | ||| ||| ||||| |||||||| ||| |||||| |||||| ||||||||||||||||| |
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| T |
5670431 |
gagagaagaactccttacagaacattatgaaaaagttaattggcaaaaagtacgccatctatgtgcaaaggtgag |
5670357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 78 - 252
Target Start/End: Complemental strand, 5692305 - 5692131
Alignment:
| Q |
78 |
cagctaaaatgtggtgctattgtcgactggtatacttaccgatgtcttacttgtacggaaagaggtttgtcggtccaatcacaccactcatcttacagtt |
177 |
Q |
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|||||| ||||| ||| ||||||||| |||||||| | || |||||||||||||| |||||||||||||||||||||||||||||| | | |||| |||| |
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| T |
5692305 |
cagctagaatgttgtgttattgtcgattggtatacatgcctatgtcttacttgtatggaaagaggtttgtcggtccaatcacaccattgaccttaaagtt |
5692206 |
T |
|
| Q |
178 |
gagagaagaacttcatactcaaccttatggtaaagttaactggaaaaaagcacgccacctatgtgcaaaggtgag |
252 |
Q |
| |
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|||||||||||| | ||| ||||||||| |||||||| ||| |||||| |||||| ||||||||||||||||| |
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| T |
5692205 |
gagagaagaactccttacagaaccttatgaaaaagttaattggcaaaaagtacgccatctatgtgcaaaggtgag |
5692131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 72 - 250
Target Start/End: Complemental strand, 12137855 - 12137677
Alignment:
| Q |
72 |
taatttcagctaaaatgtggtgctattgtcgactggtatacttaccgatgtcttacttgtacggaaagaggtttgtcggtccaatcacaccactcatctt |
171 |
Q |
| |
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||||| |||||||||||||||| || |||||| |||||||| | || |||||||||||||| |||||||| ||||| ||| |||||||||| |||||||| |
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| T |
12137855 |
taattgcagctaaaatgtggtgttactgtcgattggtatacatgcctatgtcttacttgtatggaaagagatttgtgggttcaatcacaccgctcatctt |
12137756 |
T |
|
| Q |
172 |
acagttgagagaagaacttcatactcaaccttatggtaaagttaactggaaaaaagcacgccacctatgtgcaaaggtg |
250 |
Q |
| |
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|||||||||||||||||| ||||| ||||||||| |||||||| |||||||||||||| |||| ||||| |||||| |
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|
| T |
12137755 |
acagttgagagaagaactctatactgaaccttatgcaaaagttaattggaaaaaagcacgtcaccagtgtgcgaaggtg |
12137677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 82 - 253
Target Start/End: Original strand, 13052377 - 13052548
Alignment:
| Q |
82 |
taaaatgtggtgctattgtcgactggtatacttaccgatgtcttacttgtacggaaagaggtttgtcggtccaatcacaccactcatcttacagttgaga |
181 |
Q |
| |
|
|||||||||||| ||||||||| || |||| | || ||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
13052377 |
taaaatgtggtgttattgtcgattgacatacatgcctatgtcttacttgtacgggaagaggtttgtgggtcgaatcacaccactcatcttacagttgaga |
13052476 |
T |
|
| Q |
182 |
gaagaacttcatactcaaccttatggtaaagttaactggaaaaaagcacgccacctatgtgcaaaggtgaga |
253 |
Q |
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|||||| |||||| ||||||||| | |||||| | ||| ||| |||| |||| |||||||||||||||| |
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| T |
13052477 |
gaagaaattcataatcaaccttacgaaaaagttgattggttcaaatcacgtcaccaatgtgcaaaggtgaga |
13052548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 119 - 163
Target Start/End: Complemental strand, 1942038 - 1941994
Alignment:
| Q |
119 |
atgtcttacttgtacggaaagaggtttgtcggtccaatcacacca |
163 |
Q |
| |
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|||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
1942038 |
atgtgttacttgtacggaaagaggtttgttggtccaatcacacca |
1941994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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