View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3546_high_33 (Length: 369)
Name: NF3546_high_33
Description: NF3546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3546_high_33 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 19 - 369
Target Start/End: Original strand, 30255996 - 30256342
Alignment:
| Q |
19 |
gatattactgcattcatgcattagattctctccttcttataataaataccctccttcacttcttctccatgcaatcctcaactccgcaaccttctctttc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
30255996 |
gatattactgcattcatgcattagattctctccttcttataataaataccctccttcacttcttctctatgcaatcctcaactccgcaaccttctctttc |
30256095 |
T |
|
| Q |
119 |
ctctatggcctcaaaagccttaaccactggtactcactcccgaaatggacgccgtttctcagtctttgatgactcggatgaggtattcagcatgcttctt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30256096 |
ctctatggcctcaaaagccttaaccactggtactcactcccgaaatggacgccgtttctcagtctttgatgactcggatgaggtattcagcatgcttctt |
30256195 |
T |
|
| Q |
219 |
cttactctttactttgccggttcgactttaattgtttctgttagataaaacttttataactataacattaataacattagattgaatgtaagtgtattgg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30256196 |
----ctctttactttgccggttcgactttaattgtttctgttagataaaacttttataactataacattaataacattagattgaatgtaagtgtattgg |
30256291 |
T |
|
| Q |
319 |
actatgtaagtaatcagaaggattatgagattaaggctttgttgttgtact |
369 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30256292 |
actatgtaagtaatcagaaggattatgagattaaggctttgttgttgtact |
30256342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 45241876 - 45241910
Alignment:
| Q |
19 |
gatattactgcattcatgcattagattctctcctt |
53 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
45241876 |
gatattactgcattcatgcattagattctctcctt |
45241910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 42317932 - 42317898
Alignment:
| Q |
19 |
gatattactgcattcatgcattagattctctcctt |
53 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |
|
|
| T |
42317932 |
gatattactgcattcatgcattaaattctctcctt |
42317898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 6671327 - 6671293
Alignment:
| Q |
19 |
gatattactgcattcatgcattagattctctcctt |
53 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
6671327 |
gatattactgcattcatgcattagattctctcctt |
6671293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 31663184 - 31663218
Alignment:
| Q |
19 |
gatattactgcattcatgcattagattctctcctt |
53 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |
|
|
| T |
31663184 |
gatattactgcattcatgcattaaattctctcctt |
31663218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University