View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3546_high_38 (Length: 334)
Name: NF3546_high_38
Description: NF3546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3546_high_38 |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 31710588 - 31710259
Alignment:
| Q |
1 |
tatgtttggctttggg-cattaatgaaattgtggcaaaagtagtataggatacgcgattgaagatttaaacgtcaaaccaaacatatgttaagagtatta |
99 |
Q |
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|||| ||||||||||| | |||||||||||| |||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
31710588 |
tatgcttggctttggggctttaatgaaattgcggcaaaagtagtatagaatgcgcgattgaagatttaaacttcaaaccaaacatatgttaagaatatta |
31710489 |
T |
|
| Q |
100 |
ttggtttgagaatttgtttttatctagttctcactaatcatttcggcctggtatatatcatgtctgatatctcagtagatttgtcaaaattacgaagagc |
199 |
Q |
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|||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||| ||| |
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| T |
31710488 |
ttggtttgagaatttgtttttatctagttctcaccagtcatttcggcctcgtatatatcatgtctggtatctcagtagatttgtcaaaatcacgaaaagc |
31710389 |
T |
|
| Q |
200 |
caccttaattttgcaaaataccgtggccattttctcgaatcatatatatgattttaacataattcaaatgcaattatgaattactcgtacattatcaaaa |
299 |
Q |
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||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
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| T |
31710388 |
caccttaattttgtaaattaccgtggccattttctcgaatcatatatatgattttagcataattcaaatgcaattatgaattactagtacattatcaaaa |
31710289 |
T |
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| Q |
300 |
ctagcctagaataattttgcttgtcctttg |
329 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
31710288 |
ctagcctagaataattttgcttgtcctttg |
31710259 |
T |
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