View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3546_high_39 (Length: 331)

Name: NF3546_high_39
Description: NF3546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3546_high_39
NF3546_high_39
[»] chr2 (26 HSPs)
chr2 (18-171)||(13717176-13717329)
chr2 (11-137)||(41436316-41436443)
chr2 (11-136)||(1004771-1004896)
chr2 (15-149)||(31904206-31904340)
chr2 (22-131)||(18717852-18717962)
chr2 (15-131)||(40574144-40574261)
chr2 (216-264)||(13717382-13717430)
chr2 (18-131)||(29526302-29526416)
chr2 (22-121)||(38024192-38024291)
chr2 (14-119)||(45303804-45303910)
chr2 (15-138)||(4557566-4557691)
chr2 (92-169)||(36087416-36087493)
chr2 (55-159)||(3689592-3689695)
chr2 (22-136)||(40346710-40346825)
chr2 (15-82)||(19889741-19889807)
chr2 (18-159)||(32909378-32909523)
chr2 (15-137)||(42251602-42251725)
chr2 (23-136)||(17641177-17641291)
chr2 (13-121)||(6462602-6462711)
chr2 (79-131)||(14953084-14953137)
chr2 (20-131)||(23453344-23453457)
chr2 (20-116)||(28331270-28331367)
chr2 (20-131)||(13738396-13738508)
chr2 (42-82)||(21646528-21646568)
chr2 (14-74)||(27896457-27896517)
chr2 (54-109)||(37851286-37851342)
[»] chr8 (22 HSPs)
chr8 (15-155)||(44648915-44649056)
chr8 (15-136)||(41726891-41727013)
chr8 (14-119)||(1342316-1342421)
chr8 (18-131)||(18647462-18647575)
chr8 (11-118)||(34678221-34678328)
chr8 (17-155)||(6270127-6270266)
chr8 (22-136)||(18200677-18200792)
chr8 (42-159)||(13873719-13873837)
chr8 (20-136)||(35901412-35901529)
chr8 (54-137)||(3347506-3347590)
chr8 (24-131)||(17720179-17720287)
chr8 (16-138)||(600368-600491)
chr8 (11-139)||(10029153-10029282)
chr8 (15-155)||(11150918-11151058)
chr8 (20-131)||(32881113-32881225)
chr8 (67-131)||(33810064-33810128)
chr8 (15-138)||(40489845-40489968)
chr8 (17-72)||(27507007-27507062)
chr8 (62-132)||(33621408-33621479)
chr8 (42-139)||(20821912-20822010)
chr8 (20-136)||(43917587-43917704)
chr8 (20-155)||(3137400-3137536)
[»] chr1 (19 HSPs)
chr1 (17-168)||(8001711-8001863)
chr1 (15-138)||(26829487-26829611)
chr1 (20-131)||(13969100-13969212)
chr1 (18-136)||(17169266-17169385)
chr1 (32-169)||(11449072-11449210)
chr1 (22-155)||(46295848-46295982)
chr1 (17-137)||(5069494-5069614)
chr1 (20-136)||(10226458-10226575)
chr1 (33-137)||(33148126-33148231)
chr1 (17-113)||(37494173-37494265)
chr1 (53-155)||(31160759-31160862)
chr1 (34-137)||(40430824-40430930)
chr1 (67-131)||(47496864-47496928)
chr1 (92-131)||(3529444-3529483)
chr1 (94-131)||(5892743-5892780)
chr1 (17-66)||(35540434-35540483)
chr1 (20-72)||(3529111-3529163)
chr1 (53-128)||(48579929-48580005)
chr1 (12-75)||(52860832-52860896)
[»] chr6 (9 HSPs)
chr6 (15-131)||(32134041-32134158)
chr6 (20-131)||(5611130-5611242)
chr6 (20-134)||(10008193-10008307)
chr6 (18-75)||(8636802-8636859)
chr6 (23-136)||(19320267-19320382)
chr6 (20-137)||(2470351-2470469)
chr6 (53-134)||(17345840-17345922)
chr6 (11-155)||(17834953-17835098)
chr6 (92-136)||(2398081-2398125)
[»] chr7 (17 HSPs)
chr7 (20-139)||(37928300-37928420)
chr7 (29-159)||(8896571-8896702)
chr7 (15-136)||(12810143-12810265)
chr7 (16-112)||(34993148-34993245)
chr7 (11-155)||(31850725-31850871)
chr7 (12-136)||(1309720-1309845)
chr7 (101-164)||(18756945-18757008)
chr7 (18-136)||(43626345-43626464)
chr7 (15-136)||(16979937-16980059)
chr7 (20-117)||(31487725-31487823)
chr7 (15-131)||(19676990-19677107)
chr7 (15-155)||(24937827-24937967)
chr7 (18-118)||(25530559-25530660)
chr7 (20-138)||(23142647-23142766)
chr7 (23-132)||(21515022-21515132)
chr7 (20-76)||(18221043-18221100)
chr7 (93-130)||(38995137-38995174)
[»] chr3 (17 HSPs)
chr3 (20-137)||(26613060-26613179)
chr3 (15-131)||(48338808-48338925)
chr3 (15-138)||(38359042-38359166)
chr3 (20-155)||(6785771-6785908)
chr3 (23-131)||(29032415-29032524)
chr3 (16-131)||(49261776-49261892)
chr3 (20-150)||(4020098-4020229)
chr3 (20-152)||(28709546-28709679)
chr3 (15-155)||(42437693-42437832)
chr3 (17-138)||(50958857-50958979)
chr3 (16-136)||(44698214-44698335)
chr3 (42-131)||(49710967-49711056)
chr3 (15-121)||(54801341-54801448)
chr3 (15-99)||(4128726-4128811)
chr3 (23-131)||(12109653-12109762)
chr3 (15-159)||(44291204-44291347)
chr3 (20-131)||(49543205-49543317)
[»] chr5 (8 HSPs)
chr5 (22-138)||(27544591-27544708)
chr5 (15-131)||(30293824-30293941)
chr5 (76-137)||(7718547-7718608)
chr5 (20-136)||(36482052-36482168)
chr5 (53-144)||(4350892-4350983)
chr5 (18-159)||(6646286-6646428)
chr5 (45-159)||(8151768-8151885)
chr5 (38-115)||(16611525-16611603)
[»] chr4 (18 HSPs)
chr4 (17-155)||(12094955-12095094)
chr4 (53-137)||(43970041-43970126)
chr4 (56-128)||(44190255-44190328)
chr4 (11-138)||(31991452-31991580)
chr4 (54-137)||(37431777-37431861)
chr4 (22-136)||(28176778-28176892)
chr4 (62-152)||(37183080-37183171)
chr4 (11-136)||(20775063-20775189)
chr4 (42-138)||(31089779-31089875)
chr4 (15-131)||(48419068-48419185)
chr4 (15-138)||(27284067-27284191)
chr4 (54-112)||(18093682-18093741)
chr4 (15-136)||(28740280-28740403)
chr4 (16-129)||(55126781-55126896)
chr4 (20-137)||(27133549-27133667)
chr4 (23-131)||(2824817-2824926)
chr4 (17-136)||(22611893-22612014)
chr4 (74-138)||(31089510-31089574)
[»] scaffold0039 (1 HSPs)
scaffold0039 (12-137)||(29982-30108)
[»] scaffold0002 (1 HSPs)
scaffold0002 (92-139)||(120742-120789)
[»] scaffold0103 (1 HSPs)
scaffold0103 (53-134)||(28847-28929)


Alignment Details
Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 18 - 171
Target Start/End: Original strand, 13717176 - 13717329
Alignment:
Q  18 aatggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattacttattaaaaataacattctatatttttaagataaaatttctatt 117  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||    
T  13717176 aatggttaagcatctaaaataagtaagttttcatcaaaaagttatgtaattattacttattaaaaataacattttatattttcaagacaaaatttctatt 13717275  T
Q  118 tgtatattccttaatcattgctacgagggcactggttaacaacactcatattat 171  Q
    ||||||||||||||  ||||||  |||||||| ||||||||| |||| ||||||    
T  13717276 tgtatattccttaactattgctctgagggcaccggttaacaagactcgtattat 13717329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 137
Target Start/End: Original strand, 41436316 - 41436443
Alignment:
Q  11 caaaggcaatggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattatta-cttattaaaaataacattctatatttttaagataaaa 109  Q
    ||||||||||||||||||||| |||| ||| |||||||||| |||||||| |||||| ||||  |||| |||||||||||  |||| || ||||||||||    
T  41436316 caaaggcaatggttaagcatccaaaacaagtaagttttcatgaaaaagttgtgtaatcattattttatcaaaaataacatcttatacttctaagataaaa 41436415  T
Q  110 tttctatttgtatattccttaatcattg 137  Q
    ||||||| |||| ||| |||||||||||    
T  41436416 tttctatatgtaaattacttaatcattg 41436443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 11 - 136
Target Start/End: Complemental strand, 1004896 - 1004771
Alignment:
Q  11 caaaggcaatggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattacttattaaaaataacattctatatttttaagataaaat 110  Q
    ||||||||||||||||| |||||||| ||  ||||||| || |||||||| |||||| || | |||| |||| ||| ||| |||||||| |||| |||||    
T  1004896 caaaggcaatggttaaggatctaaaacaaaaaagtttttatgaaaaagttgtgtaatcataatttatcaaaagtaatattttatattttcaagacaaaat 1004797  T
Q  111 ttctatttgtatattccttaatcatt 136  Q
    ||||||||||| ||||||||| ||||    
T  1004796 ttctatttgtagattccttaaccatt 1004771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 15 - 149
Target Start/End: Complemental strand, 31904340 - 31904206
Alignment:
Q  15 ggcaatggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattactt-attaaaaataacattctatatttttaagataaaatttc 113  Q
    |||| ||||||| ||||||||||||| || |||| || ||||| || |||||| ||||||| ||||||||||||||| ||||||||||||||||||| |     
T  31904340 ggcattggttaatcatctaaaataagtaaatttt-atgaaaaaattgtgtaatcattacttgattaaaaataacattttatatttttaagataaaatatt 31904242  T
Q  114 tatttgtatattccttaatcattgctacgagggcac 149  Q
    |||||||| | | |||||||| |||| | |||||||    
T  31904241 tatttgtagaattcttaatcaatgctccaagggcac 31904206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 22 - 131
Target Start/End: Original strand, 18717852 - 18717962
Alignment:
Q  22 gttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattactt-attaaaaataacattctatatttttaagataaaatttctatttgt 120  Q
    |||||||||| |||| || ||| ||||||| |||||||| |||||| ||||||| || |||| ||||||  ||||||||||| |||||||||||||||||    
T  18717852 gttaagcatccaaaacaaacaaattttcatgaaaaagttgtgtaatcattacttgatcaaaagtaacatcttatatttttaaaataaaatttctatttgt 18717951  T
Q  121 atattccttaa 131  Q
    | |||||||||    
T  18717952 aaattccttaa 18717962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 131
Target Start/End: Complemental strand, 40574261 - 40574144
Alignment:
Q  15 ggcaatggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattact-tattaaaaataacattctatatttttaagataaaatttc 113  Q
    ||||||||||||||||| |||| ||| |  ||||||| |||||||| ||||||||||||| ||| |||| | ||||| |||||||  |||| ||||||||    
T  40574261 ggcaatggttaagcatccaaaacaagtacattttcatgaaaaagttgtgtaattattactctatcaaaagttacattttatatttccaagacaaaatttc 40574162  T
Q  114 tatttgtatattccttaa 131  Q
    |||||||| |||||||||    
T  40574161 tatttgtagattccttaa 40574144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 13717382 - 13717430
Alignment:
Q  216 agttttttaaattcaaacaccaaagataagcattggtttacttattttt 264  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  13717382 agttttttaaattcaaacaccaaagataagcattggtttacttattttt 13717430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 29526416 - 29526302
Alignment:
Q  18 aatggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattactt-attaaaaataacattctatatttttaagataaaatttctat 116  Q
    ||||||||| ||| ||||||||| | |||||||| ||||| || |||||| ||||||| ||||||||||| ||| |||||||||||||| |||||| |||    
T  29526416 aatggttaaacatttaaaataagtaggttttcataaaaaaattgtgtaatcattactttattaaaaataatattttatatttttaagattaaatttttat 29526317  T
Q  117 ttgtatattccttaa 131  Q
    || || |||| ||||    
T  29526316 ttatagattctttaa 29526302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 121
Target Start/End: Complemental strand, 38024291 - 38024192
Alignment:
Q  22 gttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattacttattaaaaataacattctatatttttaagataaaatttctatttgta 121  Q
    ||||| |||| |||| ||||  ||||| || |||||||||||||||||||| ||  | ||| ||| ||  ||||||||||||||||||||||||||||||    
T  38024291 gttaaacatccaaaacaagcccgttttaatgaaaaagttatgtaattattatttgatcaaagtaatatcttatatttttaagataaaatttctatttgta 38024192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 14 - 119
Target Start/End: Original strand, 45303804 - 45303910
Alignment:
Q  14 aggcaatggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattacttattaaaaa-taacattctatatttttaagataaaattt 112  Q
    ||||| ||||||||||| ||||| ||  ||||||||||  |||| | ||||||| | || ||| | |||| ||||| |||||||||||||||||||||||    
T  45303804 aggcattggttaagcatttaaaacaaaaaagttttcatacaaaaatgatgtaatcaatatttaatcaaaagtaacactctatatttttaagataaaattt 45303903  T
Q  113 ctatttg 119  Q
    |||||||    
T  45303904 ctatttg 45303910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 138
Target Start/End: Original strand, 4557566 - 4557691
Alignment:
Q  15 ggcaatggttaagcatctaaaataagcaagttttcatcaaaaa-gttatgtaattattacttatt-aaaaataacattctatatttttaagataaaattt 112  Q
    ||||||||||||||||| || ||||| ||||||| || ||||| |||  ||||| |||||| | | ||||||||| |  |||||||  ||||||||||||    
T  4557566 ggcaatggttaagcatccaagataagtaagtttttatgaaaaaagttgagtaataattactcaatcaaaaataacttcttatatttccaagataaaattt 4557665  T
Q  113 ctatttgtatattccttaatcattgc 138  Q
    ||||||||| |||| |||| ||||||    
T  4557666 ctatttgtagattctttaaccattgc 4557691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 169
Target Start/End: Original strand, 36087416 - 36087493
Alignment:
Q  92 tatatttttaagataaaatttctatttgtatattccttaatcattgctacgagggcactggttaacaacactcatatt 169  Q
    ||||||| |||||||||||||||||||||| ||||||||| ||||||   ||||||||| |||| ||| || ||||||    
T  36087416 tatatttctaagataaaatttctatttgtagattccttaaccattgccctgagggcactagttagcaagacccatatt 36087493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 55 - 159
Target Start/End: Complemental strand, 3689695 - 3689592
Alignment:
Q  55 aaagttatgtaattattacttattaaaaataacattctatatttttaagataaaatttctatttgtatattccttaatcattgctacgagggcactggtt 154  Q
    ||||||||||||| |||||  || |||| ||||||  |||||||  ||||||||||||||||||||| | ||||||| |||||   ||||||||||| ||    
T  3689695 aaagttatgtaatcattacg-atcaaaagtaacatcttatatttcaaagataaaatttctatttgtagaatccttaaccattgtcccgagggcactgatt 3689597  T
Q  155 aacaa 159  Q
    |||||    
T  3689596 aacaa 3689592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 40346710 - 40346825
Alignment:
Q  22 gttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattactt-attaaaaataacattctatatttttaagataaaatttctatttgt 120  Q
    |||||| ||| |||||||| ||||||| || |||||||| || ||| |||| || || |||||||||||  |||||||| || | ||||||||||| |||    
T  40346710 gttaagtatccaaaataagtaagtttttatgaaaaagttgtgcaatcattatttgatcaaaaataacatcttatattttcaatacaaaatttctatatgt 40346809  T
Q  121 atattccttaatcatt 136  Q
    | ||||||||| ||||    
T  40346810 agattccttaaccatt 40346825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 19889741 - 19889807
Alignment:
Q  15 ggcaatggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattacttattaaaa 82  Q
    |||| |||||||||||| |||  ||| |||||||||| ||||||| |||||||||||||||| |||||    
T  19889741 ggcattggttaagcatc-aaatgaagtaagttttcattaaaaagtaatgtaattattacttaataaaa 19889807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 159
Target Start/End: Complemental strand, 32909523 - 32909378
Alignment:
Q  18 aatggttaagcatctaaaataagcaagttttcatcaaaaa---gttatgtaattattactt-attaaaaataacattctatatttttaagataaaatttc 113  Q
    |||| ||||||||| |||||||  ||||||| || |||||   |||||||||| ||||||| || |||| ||| ||  |||||||  |||| |||||||     
T  32909523 aatgattaagcatccaaaataaataagtttttattaaaaaaatgttatgtaataattactttatcaaaagtaatatcttatatttccaagacaaaattta 32909424  T
Q  114 tatttgtatattccttaatcattgctacgagggcactggttaacaa 159  Q
    |||||||||||| ||||| | ||| | | ||||||||| |||||||    
T  32909423 tatttgtatatttcttaacctttgttccaagggcactgattaacaa 32909378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 137
Target Start/End: Original strand, 42251602 - 42251725
Alignment:
Q  15 ggcaatggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattatt-acttattaaaaataacattctatatttttaagataaaatttc 113  Q
    |||| |||||||||||| |||| ||| |||||| ||| |||||||| |||||| ||| | | || |||||||||||  ||||||| ||||||||| |||     
T  42251602 ggcattggttaagcatccaaaacaagtaagtttacatgaaaaagttgtgtaatcattgaatgataaaaaataacatgttatatttctaagataaattttt 42251701  T
Q  114 tatttgtatattccttaatcattg 137  Q
    || ||  | ||||||||| |||||    
T  42251702 tacttagagattccttaaccattg 42251725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 136
Target Start/End: Original strand, 17641177 - 17641291
Alignment:
Q  23 ttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattac-ttattaaaaataacattctatatttttaagataaaatttctatttgta 121  Q
    |||||||||||||||||| ||||||||||  ||||||| || ||| ||| | |||| |||| ||||||| |||||||  || | ||| ||| ||||| ||    
T  17641177 ttaagcatctaaaataagtaagttttcattgaaaagttgtgcaataatttctttatcaaaagtaacattttatatttcaaaaacaaagtttttatttata 17641276  T
Q  122 tattccttaatcatt 136  Q
     ||||||||| ||||    
T  17641277 gattccttaaccatt 17641291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 121
Target Start/End: Complemental strand, 6462711 - 6462602
Alignment:
Q  13 aaggcaatggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattactt-attaaaaataacattctatatttttaagataaaatt 111  Q
    ||||||||| ||||||||  |||| ||  ||||||| || |||||||| | ||||||||| || || |||| ||| ||| ||||||| ||||| | ||||    
T  6462711 aaggcaatgattaagcattcaaaacaaataagttttaataaaaaagttgtataattattattttatcaaaagtaatattttatatttataagacagaatt 6462612  T
Q  112 tctatttgta 121  Q
    ||||||||||    
T  6462611 tctatttgta 6462602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 131
Target Start/End: Original strand, 14953084 - 14953137
Alignment:
Q  79 aaaaataacattctatatttttaagataaaatttctattt-gtatattccttaa 131  Q
    |||||||||||| ||||||||||||| ||||||| ||||| ||| |||||||||    
T  14953084 aaaaataacattttatatttttaagacaaaatttttatttcgtagattccttaa 14953137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 23453344 - 23453457
Alignment:
Q  20 tggttaagcatctaaaataagcaagttttcat-caaaaagttatgtaattattactt-attaaaaataacattctatatttttaagataaaatttctatt 117  Q
    |||||||| ||| |||| ||||||||||| ||  |||||||| ||||||  ||| || || |||| ||||||  |||||||| |||| ||||||| ||||    
T  23453344 tggttaagtatccaaaacaagcaagtttttatggaaaaagttgtgtaatctttatttgatcaaaagtaacatcttatattttcaagacaaaatttttatt 23453443  T
Q  118 tgtatattccttaa 131  Q
    |||| |||||||||    
T  23453444 tgtagattccttaa 23453457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 28331367 - 28331270
Alignment:
Q  20 tggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattactt-attaaaaataacattctatatttttaagataaaatttctat 116  Q
    |||||||||||  |||||||| ||||||| || ||| |||| |||||| ||||||| || |||||||| ||| |||||||  |||| |||| ||||||    
T  28331367 tggttaagcattcaaaataagtaagtttttatgaaagagttgtgtaatcattacttgatcaaaaataatattttatatttccaagacaaaacttctat 28331270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 131
Target Start/End: Complemental strand, 13738508 - 13738396
Alignment:
Q  20 tggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattac-ttattaaaaataacattctatatttttaagataaaatttctattt 118  Q
    |||||||||||| |||| ||| ||||||| || ||||| || |||||| ||||| |||| | || ||||||  |||||||| || | ||||||| |||||    
T  13738508 tggttaagcatccaaaacaagtaagtttttataaaaaaattgtgtaatcattactttatcagaagtaacatcttatattttcaaaacaaaatttttattt 13738409  T
Q  119 gtatattccttaa 131  Q
     || |||||||||    
T  13738408 atagattccttaa 13738396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 21646568 - 21646528
Alignment:
Q  42 aagttttcatcaaaaagttatgtaattattacttattaaaa 82  Q
    |||||||||| ||||||| |||||||||||||||| |||||    
T  21646568 aagttttcattaaaaagtaatgtaattattacttaataaaa 21646528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 27896457 - 27896517
Alignment:
Q  14 aggcaatggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattact 74  Q
    ||||| ||||||| || | |||||||| ||||||| || |||||||| |||||||||||||    
T  27896457 aggcagtggttaaacaaccaaaataagtaagttttaattaaaaagttgtgtaattattact 27896517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 109
Target Start/End: Original strand, 37851286 - 37851342
Alignment:
Q  54 aaaagttatgtaattattactta-ttaaaaataacattctatatttttaagataaaa 109  Q
    ||||||| ||||||||||| ||| |||||||||| | | ||||||||||||||||||    
T  37851286 aaaagttgtgtaattattatttaattaaaaataaaactttatatttttaagataaaa 37851342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 15 - 155
Target Start/End: Complemental strand, 44649056 - 44648915
Alignment:
Q  15 ggcaatggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattactt-attaaaaataacattctatatttttaagataaaatttc 113  Q
    ||||||| ||||||||| |||| ||  |||||||||| |||||||| |||||| ||||||| || |||| ||||||| |||||||| |||| ||||||||    
T  44649056 ggcaatgattaagcatccaaaacaaataagttttcatgaaaaagttgtgtaatcattactttatcaaaagtaacattttatattttcaagacaaaatttc 44648957  T
Q  114 tatttgtatattccttaatcattgctacgagggcactggtta 155  Q
    |||||||| ||||||||| ||||||  |||||||||||||||    
T  44648956 tatttgtagattccttaaccattgccccgagggcactggtta 44648915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 15 - 136
Target Start/End: Original strand, 41726891 - 41727013
Alignment:
Q  15 ggcaatggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattac-ttattaaaaataacattctatatttttaagataaaatttc 113  Q
    |||||||||||||||||||||||||| ||||||| || |||||  |||||||| ||||| |||| |||||||||||| |||||||  |||| |||||||     
T  41726891 ggcaatggttaagcatctaaaataagtaagtttttatgaaaaaactatgtaatcattactttataaaaaataacattttatatttccaagacaaaatttt 41726990  T
Q  114 tatttgtatattccttaatcatt 136  Q
    |||||||| ||||||||| ||||    
T  41726991 tatttgtagattccttaaccatt 41727013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 119
Target Start/End: Original strand, 1342316 - 1342421
Alignment:
Q  14 aggcaatggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattacttattaaaaataacattctatatttttaagataaaatttc 113  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||| |||||| |||  |||| |||| ||||||  |||||||  |||||||||||||    
T  1342316 aggcaatggttaagcatctaaaataagtaagttttcataaaaaagttgtgtaatcattgtttatcaaaagtaacatcttatatttccaagataaaatttc 1342415  T
Q  114 tatttg 119  Q
    ||||||    
T  1342416 tatttg 1342421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 18647575 - 18647462
Alignment:
Q  18 aatggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattacttattaaaaataacattctatatttttaagataaaatttctatt 117  Q
    ||||||||||||| ||||| ||| || ||| ||| ||||| || |||||| || | ||  | ||||||||||  ||||||||||||||||||||||||||    
T  18647575 aatggttaagcatttaaaacaagtaaatttccatgaaaaaattgtgtaatcatcattttatcaaaataacatcttatatttttaagataaaatttctatt 18647476  T
Q  118 tgtatattccttaa 131  Q
    |||| | |||||||    
T  18647475 tgtagactccttaa 18647462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 118
Target Start/End: Complemental strand, 34678328 - 34678221
Alignment:
Q  11 caaaggcaatggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattactt-attaaaaataacattctatatttttaagataaaa 109  Q
    ||||||||||||||||||||  |||| |||||| |||| || ||||| ||||||||||||||||| || |||| ||||||| || ||||| |||| |||     
T  34678328 caaaggcaatggttaagcattcaaaacaagcaacttttaat-aaaaaattatgtaattattacttgatcaaaagtaacattttacattttcaagacaaat 34678230  T
Q  110 tttctattt 118  Q
    |||||||||    
T  34678229 tttctattt 34678221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 155
Target Start/End: Complemental strand, 6270266 - 6270127
Alignment:
Q  17 caatggttaagcatc-taaaataagcaagttttcatcaaaaagttatgtaattattacttattaaaaataacattctatatttttaagataaaatttcta 115  Q
    |||||||||||||||  |||| ||| |||||||||| |||||||| |||||| |||||||  | |||||||||   |||||||  |||| ||||||| ||    
T  6270266 caatggttaagcatcaaaaaacaagtaagttttcataaaaaagttgtgtaatcattactttatcaaaataacaccttatatttccaagacaaaattttta 6270167  T
Q  116 tttgtatattccttaatcattgctacgagggcactggtta 155  Q
     ||||| |||||||||  |||||  |||||||||| ||||    
T  6270166 attgtagattccttaactattgccccgagggcactcgtta 6270127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 136
Target Start/End: Complemental strand, 18200792 - 18200677
Alignment:
Q  22 gttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattacttattaaaaa-taacattctatatttttaagataaaatttctatttgt 120  Q
    |||||||||| |||||||| ||| ||| || ||||| || |||||| |||||||| | |||| ||||||  ||||||||||||| ||||||| |||||||    
T  18200792 gttaagcatccaaaataagtaagcttttatgaaaaaattgtgtaatcattacttaatcaaaagtaacatgttatatttttaagacaaaatttttatttgt 18200693  T
Q  121 atattccttaatcatt 136  Q
    | ||| ||||| ||||    
T  18200692 agatttcttaaccatt 18200677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 42 - 159
Target Start/End: Original strand, 13873719 - 13873837
Alignment:
Q  42 aagttttcatcaaaaagttatgtaattattactta-ttaaaaataacattctatatttttaagataaaatttctatttgtatattccttaatcattgcta 140  Q
    ||||||| || ||||| ||||| ||| |||||||| |||||||||||||  ||||||| ||||| |||| || ||||| || ||||||||||||||||      
T  13873719 aagtttttatgaaaaaattatgcaatcattacttaattaaaaataacatcttatatttctaagacaaaaattttatttatagattccttaatcattgccc 13873818  T
Q  141 cgagggcactggttaacaa 159  Q
     ||||  ||||||||||||    
T  13873819 tgaggaaactggttaacaa 13873837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 35901529 - 35901412
Alignment:
Q  20 tggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattactta-ttaaaaataacattctatatttttaagataaaatttctattt 118  Q
    |||||||||||| |||| ||| ||||||| || |||||||| || ||| |||| ||| |||||| ||||||  || ||||| || | |||||||||||||    
T  35901529 tggttaagcatccaaaacaagtaagtttttatgaaaaagttgtgcaatcattatttaattaaaagtaacatcttacattttcaaaacaaaatttctattt 35901430  T
Q  119 gtatattccttaatcatt 136  Q
    ||| ||||||||| ||||    
T  35901429 gtagattccttaaccatt 35901412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 54 - 137
Target Start/End: Complemental strand, 3347590 - 3347506
Alignment:
Q  54 aaaagttatgtaattattac-ttattaaaaataacattctatatttttaagataaaatttctatttgtatattccttaatcattg 137  Q
    ||||||| |||||||||||| ||||||||| ||||||  |||||||| |||| ||||||| |||||||| ||| ||||| |||||    
T  3347590 aaaagttgtgtaattattactttattaaaagtaacatcttatattttcaagacaaaatttttatttgtagatttcttaaccattg 3347506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 24 - 131
Target Start/End: Complemental strand, 17720287 - 17720179
Alignment:
Q  24 taagcatctaaaataagcaagttttcatcaaaaagttatgtaattattac-ttattaaaaataacattctatatttttaagataaaatttctatttgtat 122  Q
    |||||||| |||| || ||||||||||| |||||||| |||||| ||||| | || |||||||||||  |||||||| |||| || |||||||||| ||     
T  17720287 taagcatccaaaacaaacaagttttcatgaaaaagttgtgtaatcattacatgatcaaaaataacatcttatattttcaagaaaatatttctatttatag 17720188  T
Q  123 attccttaa 131  Q
    |||| ||||    
T  17720187 attctttaa 17720179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 138
Target Start/End: Original strand, 600368 - 600491
Alignment:
Q  16 gcaatggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattac-ttattaaaaataacattctatatttttaagataaaatttct 114  Q
    ||||||||||| ||||||||| ||  |||||||||| |||||||| || ||| ||||| |||| |||| ||||||  |||||||  |||  ||||  | |    
T  600368 gcaatggttaaacatctaaaacaaataagttttcatgaaaaagttgtgcaatcattactttatcaaaagtaacatcttatatttccaagccaaaaaattt 600467  T
Q  115 atttgtatattccttaatcattgc 138  Q
    ||||||| ||||||||||||||||    
T  600468 atttgtagattccttaatcattgc 600491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 139
Target Start/End: Original strand, 10029153 - 10029282
Alignment:
Q  11 caaaggcaatggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattactt-attaaaaataacattctatatttttaagataaaa 109  Q
    ||||| || |||||||||||| |||  ||| || |||| || |||||||| | |||| ||||||| || |||| ||||||  |||||||  |||||||||    
T  10029153 caaagacattggttaagcatccaaatcaagtaaatttttatgaaaaagttgtataatcattacttgatcaaaagtaacatcttatatttccaagataaaa 10029252  T
Q  110 tttctatttgtatattccttaatcattgct 139  Q
    ||| |||||||| ||| ||||| |||||||    
T  10029253 tttttatttgtagatttcttaaccattgct 10029282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 155
Target Start/End: Original strand, 11150918 - 11151058
Alignment:
Q  15 ggcaatggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattactt-attaaaaataacattctatatttttaagataaaatttc 113  Q
    |||| |||||||||||  |||||||| ||||||| |  ||||| || |||||| |||| || || |||| ||||||  ||||||| ||||| |||| ||     
T  11150918 ggcattggttaagcattcaaaataagtaagtttttaaaaaaaa-ttgtgtaatcattatttgatcaaaagtaacatcttatatttctaagacaaaaattt 11151016  T
Q  114 tatttgtatattccttaatcattgctacgagggcactggtta 155  Q
    |||||||| ||||||||||||||||   |||||||| |||||    
T  11151017 tatttgtagattccttaatcattgccctgagggcaccggtta 11151058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 32881113 - 32881225
Alignment:
Q  20 tggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattactt-attaaaaataacattctatatttttaagataaaatttctattt 118  Q
    ||||||| |||| |||||||| ||||||| |  |||| ||| |||||| || |||| || |||||||| ||  ||||||||||||| ||||||| |||||    
T  32881113 tggttaaacatccaaaataagtaagtttttaataaaatgttgtgtaatcataacttgataaaaaataatatcttatatttttaagacaaaatttttattt 32881212  T
Q  119 gtatattccttaa 131  Q
    ||| ||| |||||    
T  32881213 gtagatttcttaa 32881225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 131
Target Start/End: Complemental strand, 33810128 - 33810064
Alignment:
Q  67 ttattacttattaaaaataacattctatatttttaagataaaatttctatttgtatattccttaa 131  Q
    |||||||||  | |||||||||   ||||||||||||||||||||||||||| || |||||||||    
T  33810128 ttattacttcatcaaaataacaacttatatttttaagataaaatttctatttctaaattccttaa 33810064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 138
Target Start/End: Original strand, 40489845 - 40489968
Alignment:
Q  15 ggcaatggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattac-ttattaaaaataacattctatatttttaagataaaatttc 113  Q
    ||||||||||||  |||||||| ||  ||||||| || ||||||||||||||| ||||| |||| || | ||||||| |||||||  |||  |||||||     
T  40489845 ggcaatggttaaatatctaaaacaaataagtttttatgaaaaagttatgtaatcattactttatcaatagtaacattttatatttacaaggcaaaatttt 40489944  T
Q  114 tatttgtatattccttaatcattgc 138  Q
    || ||||| ||||||||| ||||||    
T  40489945 ta-ttgtagattccttaaccattgc 40489968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 27507062 - 27507007
Alignment:
Q  17 caatggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattatta 72  Q
    ||||||||| |||||||||| ||| || ||||||| |||||||| |||||||||||    
T  27507062 caatggttacgcatctaaaacaagtaaattttcatgaaaaagttgtgtaattatta 27507007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 62 - 132
Target Start/End: Original strand, 33621408 - 33621479
Alignment:
Q  62 tgtaattattactt-attaaaaataacattctatatttttaagataaaatttctatttgtatattccttaat 132  Q
    |||||| ||||||| || |||| ||| ||| ||||||||||||| ||||||| |||||||| ||||||||||    
T  33621408 tgtaataattacttgatcaaaagtaaaattttatatttttaagacaaaatttttatttgtagattccttaat 33621479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 139
Target Start/End: Original strand, 20821912 - 20822010
Alignment:
Q  42 aagttttcatcaaaaagttatgtaattattacttattaaaaa-taacattctatatttttaagataaaatttctatttgtatattccttaatcattgct 139  Q
    ||||||| || ||||||| |||||||||||||||| |||||| | ||| | ||||||||||||| || | |||||| | || ||| |||||||| ||||    
T  20821912 aagtttttattaaaaagtaatgtaattattacttaataaaaagtgacaatttatatttttaagacaacaattctatctatagatttcttaatcagtgct 20822010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 43917587 - 43917704
Alignment:
Q  20 tggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattactt-attaaaaataacattctatatttttaagataaaatttctattt 118  Q
    |||||||||||| |||| ||| || |||| || ||||| || ||||||||||| || ||||||| ||||    |||||||| |||| |||| || |||||    
T  43917587 tggttaagcatccaaaacaagtaaatttttataaaaaaattgtgtaattattatttgattaaaagtaacgccttatattttcaagacaaaaattttattt 43917686  T
Q  119 gtatattccttaatcatt 136  Q
    ||| |||| |||||||||    
T  43917687 gtagattctttaatcatt 43917704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 155
Target Start/End: Original strand, 3137400 - 3137536
Alignment:
Q  20 tggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattactt-attaaaaataacattctatatttttaagataaaatttctattt 118  Q
    |||||| ||||| |||| ||  ||||||  || |||||||| |||||| ||||||| || |||| ||||||  || ||||| |||| |||||||||||||    
T  3137400 tggttaggcatccaaaacaaataagtttatatgaaaaagttgtgtaataattacttgatcaaaagtaacatcttacattttcaagacaaaatttctattt 3137499  T
Q  119 gtatattccttaatcattgctacgagggcactggtta 155  Q
     |  ||| ||||| ||||||   ||||||||||||||    
T  3137500 ctgaatttcttaaccattgccctgagggcactggtta 3137536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 17 - 168
Target Start/End: Complemental strand, 8001863 - 8001711
Alignment:
Q  17 caatggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattactt-attaaaaataacattctatatttttaagataaaatttcta 115  Q
    |||||||||||||||||||| ||| || |||||||  ||||||| |||||| ||||||| || |||| ||||||  |||||||| |||||||||||||||    
T  8001863 caatggttaagcatctaaaacaagtaaattttcatgtaaaagttgtgtaatcattactttatcaaaagtaacatcttatattttcaagataaaatttcta 8001764  T
Q  116 tttgtatattccttaatcattgctacgagggcactggttaacaacactcatat 168  Q
    ||| || ||||||||| ||||||   |||||||||||||| ||| || |||||    
T  8001763 tttctagattccttaaccattgccctgagggcactggttagcaaaacccatat 8001711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 138
Target Start/End: Original strand, 26829487 - 26829611
Alignment:
Q  15 ggcaatggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattac-ttattaaaaataacattctatatttttaagataaaatttc 113  Q
    |||||||||||||||||||||||||| || ||||||| |||||||| |||||| ||||| |||| |||| ||||||  |||||||  |||| ||||||||    
T  26829487 ggcaatggttaagcatctaaaataagtaaattttcatgaaaaagttgtgtaatcattactttatcaaaagtaacatcttatatttccaagacaaaatttc 26829586  T
Q  114 tatttgtatattccttaatcattgc 138  Q
    || ||||| ||| ||||| ||||||    
T  26829587 taattgtaaatttcttaaccattgc 26829611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 131
Target Start/End: Complemental strand, 13969212 - 13969100
Alignment:
Q  20 tggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattactta-ttaaaaataacattctatatttttaagataaaatttctattt 118  Q
    |||||||||| | |||| ||| ||||||| || ||||| || |||||| |||||||| |||||| ||||||| |||||||| |||| |||||||||||||    
T  13969212 tggttaagcaaccaaaacaagtaagtttttatgaaaaaattgtgtaataattacttaattaaaagtaacattttatattttcaagacaaaatttctattt 13969113  T
Q  119 gtatattccttaa 131  Q
    ||| |||||||||    
T  13969112 gtagattccttaa 13969100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 17169385 - 17169266
Alignment:
Q  18 aatggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattac-ttattaaaaataacattctatatttttaagataaaatttctat 116  Q
    ||||||||||||||||||| ||  |||||||||| |||||||| | |||| ||||| |||| |||||||||||  |||||||| |||| || |||| |||    
T  17169385 aatggttaagcatctaaaacaaataagttttcatgaaaaagttgtataataattactttatcaaaaataacatcttatattttcaagacaatatttttat 17169286  T
Q  117 ttgtatattccttaatcatt 136  Q
    ||||| ||| ||||||||||    
T  17169285 ttgtaaatttcttaatcatt 17169266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 32 - 169
Target Start/End: Original strand, 11449072 - 11449210
Alignment:
Q  32 taaaataagcaagttttcatcaaaaagttatgtaattattac-ttattaaaaataacattctatatttttaagataaaatttctatttgtatattcctta 130  Q
    ||||||||| ||||||| || ||||||||||||||||||||| | || |||| ||||||  ||||||||||||| ||| ||| |||||||| |||| |||    
T  11449072 taaaataagtaagtttttatgaaaaagttatgtaattattacatgatcaaaattaacatattatatttttaagacaaattttttatttgtagattcttta 11449171  T
Q  131 atcattgctacgagggcactggttaacaacactcatatt 169  Q
    | |||| |   || ||||||| ||||||| |||||||||    
T  11449172 accatttccgtgaaggcactgattaacaagactcatatt 11449210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 22 - 155
Target Start/End: Complemental strand, 46295982 - 46295848
Alignment:
Q  22 gttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattactt-attaaaaataacattctatatttttaagataaaatttctatttgt 120  Q
    |||||||||| |||| ||  ||||||| || |||||||| ||| || ||||||| || |||| ||||||| |||||||| |||||||||||| |||||||    
T  46295982 gttaagcatccaaaacaaataagtttttatgaaaaagttgtgtcatgattacttgatcaaaagtaacattttatattttcaagataaaatttttatttgt 46295883  T
Q  121 atattccttaatcattgctacgagggcactggtta 155  Q
    | ||||||||| ||||||  ||| || ||||||||    
T  46295882 agattccttaaccattgccccgaaggtactggtta 46295848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 5069494 - 5069614
Alignment:
Q  17 caatggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattac-ttattaaaaataacattctatatttttaagataaaatttcta 115  Q
    |||||||||||||||||||||||  |||||||||| ||||||||||||||| ||||| |||| |||||||| ||  |||||||  |||| ||||||| ||    
T  5069494 caatggttaagcatctaaaataaataagttttcat-aaaaagttatgtaatcattactttatcaaaaataatatcttatatttacaagacaaaattttta 5069592  T
Q  116 tttgtatattccttaatcattg 137  Q
    | |||| |||| |||| |||||    
T  5069593 tatgtagattctttaaccattg 5069614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 10226575 - 10226458
Alignment:
Q  20 tggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattactt-attaaaaataacattctatatttttaagataaaatttctattt 118  Q
    ||||||||  ||||||| | | |||||||||| |||||||| |||||| ||||||| || |||| ||||||  |||||||| |||| |||||||||||||    
T  10226575 tggttaagtctctaaaacaggtaagttttcatgaaaaagttgtgtaatcattactttatcaaaattaacatcttatattttcaagacaaaatttctattt 10226476  T
Q  119 gtatattccttaatcatt 136  Q
    ||| |||||||| |||||    
T  10226475 gtagattccttactcatt 10226458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 137
Target Start/End: Complemental strand, 33148231 - 33148126
Alignment:
Q  33 aaaataagcaagttttcatcaaaaagttatgtaattattactt-attaaaaataacattctatatttttaagataaaatttctatttgtatattccttaa 131  Q
    |||| ||| ||||||| || ||||| || |||||| ||||||| || |||| || |||  ||||||||||||| |||||||| |||||||||||||||||    
T  33148231 aaaacaagtaagtttttatgaaaaaattgtgtaatcattacttgatcaaaagtagcatcttatatttttaagacaaaatttcaatttgtatattccttaa 33148132  T
Q  132 tcattg 137  Q
     |||||    
T  33148131 ccattg 33148126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 113
Target Start/End: Original strand, 37494173 - 37494265
Alignment:
Q  17 caatggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattac-ttattaaaaataacattctatatttttaagataaaatttc 113  Q
    |||||||||||||||||| ||||| |||||||||| |||     ||||||| ||||| |||| |||||||||||  |||||||| |||||||||||||    
T  37494173 caatggttaagcatctaagataagtaagttttcatgaaa-----atgtaatcattactttatcaaaaataacatcttatattttcaagataaaatttc 37494265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 155
Target Start/End: Original strand, 31160759 - 31160862
Alignment:
Q  53 aaaaagttatgtaattattacttattaaaaa-taacattctatatttttaagataaaatttctatttgtatattccttaatcattgctacgagggcactg 151  Q
    ||||||| |||||||||||||||| | |||| | | | | ||||||||||||| ||| ||||||||| ||| |||||||| ||||||   ||||||||||    
T  31160759 aaaaagtgatgtaattattacttaatcaaaagtcaaaatttatatttttaagacaaattttctatttatattttccttaaccattgcccagagggcactg 31160858  T
Q  152 gtta 155  Q
    ||||    
T  31160859 gtta 31160862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 137
Target Start/End: Original strand, 40430824 - 40430930
Alignment:
Q  34 aaataagcaagttttcatcaaaaagttatgtaattattacttatt-aaaaataa--cattctatatttttaagataaaatttctatttgtatattcctta 130  Q
    |||||||||||||||||| |||||||| |||||| |||| || || ||||||||    || ||||||||||||||||| ||| ||||| || | ||||||    
T  40430824 aaataagcaagttttcatgaaaaagttgtgtaatcattatttgttaaaaaataatgttttttatatttttaagataaattttttatttctagaatcctta 40430923  T
Q  131 atcattg 137  Q
    |||||||    
T  40430924 atcattg 40430930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 131
Target Start/End: Original strand, 47496864 - 47496928
Alignment:
Q  67 ttattacttattaaaaataacattctatatttttaagataaaatttctatttgtatattccttaa 131  Q
    |||||||||  | |||||||||   ||||||||||||||||||||||||||| || |||||||||    
T  47496864 ttattacttcatcaaaataacaacttatatttttaagataaaatttctatttataaattccttaa 47496928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 92 - 131
Target Start/End: Original strand, 3529444 - 3529483
Alignment:
Q  92 tatatttttaagataaaatttctatttgtatattccttaa 131  Q
    |||||||| |||||||||||||||||| ||||||||||||    
T  3529444 tatattttcaagataaaatttctatttatatattccttaa 3529483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 131
Target Start/End: Original strand, 5892743 - 5892780
Alignment:
Q  94 tatttttaagataaaatttctatttgtatattccttaa 131  Q
    ||||||||||||| ||||||| ||||||||||||||||    
T  5892743 tatttttaagatataatttctttttgtatattccttaa 5892780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 35540434 - 35540483
Alignment:
Q  17 caatggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaa 66  Q
    ||||| |||||||||||||||||| |||||||||| ||||| ||| ||||    
T  35540434 caatgattaagcatctaaaataagtaagttttcatgaaaaaattacgtaa 35540483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 3529111 - 3529163
Alignment:
Q  20 tggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattatta 72  Q
    |||||||||||| |||||||| || ||||||| ||||| || |||||||||||    
T  3529111 tggttaagcatccaaaataagtaaattttcataaaaaaattgtgtaattatta 3529163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 128
Target Start/End: Original strand, 48579929 - 48580005
Alignment:
Q  53 aaaaagttatgtaattattactt-attaaaaataacattctatatttttaagataaaatttctatttgtatattcct 128  Q
    |||||||| |||||| |||| || ||||||||| ||||  ||||||| ||||| |||||||||||| ||| ||||||    
T  48579929 aaaaagttgtgtaatcattatttgattaaaaattacatcttatatttctaagacaaaatttctattagtagattcct 48580005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 52860832 - 52860896
Alignment:
Q  12 aaaggcaatggttaagcatctaaaataagcaagttttcat-caaaaagttatgtaattattactt 75  Q
    |||| |||||||||||||||||||||||| || |||| ||  |||||||| |||||| |||||||    
T  52860832 aaagacaatggttaagcatctaaaataagtaaattttaataaaaaaagttttgtaatcattactt 52860896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 15 - 131
Target Start/End: Original strand, 32134041 - 32134158
Alignment:
Q  15 ggcaatggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattactt-attaaaaataacattctatatttttaagataaaatttc 113  Q
    |||| ||||||||||||||||||||| |||||||| | |||||||| |||||| ||||||| || |||||||||||  |||||| | || | ||||||||    
T  32134041 ggcattggttaagcatctaaaataagtaagttttcttgaaaaagttgtgtaatcattacttgataaaaaataacatcttatattctcaaaacaaaatttc 32134140  T
Q  114 tatttgtatattccttaa 131  Q
    |||||||| |||||||||    
T  32134141 tatttgtagattccttaa 32134158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 20 - 131
Target Start/End: Complemental strand, 5611242 - 5611130
Alignment:
Q  20 tggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattactt-attaaaaataacattctatatttttaagataaaatttctattt 118  Q
    ||||||| |||| |||| ||| ||||||| || || ||||| | ||||||||| || ||||||| ||||||  ||||||| ||||| |||||||||||||    
T  5611242 tggttaaacatccaaaacaagtaagtttttatgaataagttgtataattattatttgattaaaagtaacatcttatatttctaagacaaaatttctattt 5611143  T
Q  119 gtatattccttaa 131  Q
     || |||||||||    
T  5611142 atagattccttaa 5611130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 134
Target Start/End: Original strand, 10008193 - 10008307
Alignment:
Q  20 tggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattactt-attaaaaataacattctatatttttaagataaaatttctattt 118  Q
    |||||||||| | |||| ||| ||||||| || |||||||  |||||||||||||| || |||| ||||  | ||||||||||||| ||||||||| |||    
T  10008193 tggttaagcaaccaaaagaagtaagtttttattaaaaagtggtgtaattattacttgatcaaaagtaaccgtttatatttttaagacaaaatttct-ttt 10008291  T
Q  119 gtatattccttaatca 134  Q
     || ||||||||||||    
T  10008292 ttagattccttaatca 10008307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 8636859 - 8636802
Alignment:
Q  18 aatggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattactt 75  Q
    |||| ||||||||  |||||||| |||||||||| ||||||||||||||| |||||||    
T  8636859 aatgattaagcatacaaaataagtaagttttcatgaaaaagttatgtaatcattactt 8636802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 136
Target Start/End: Complemental strand, 19320382 - 19320267
Alignment:
Q  23 ttaagcatctaaaataagcaagttttcatcaaaa-agttatgtaattattactt-attaaaaataacattctatatttttaagataaaatttctatttgt 120  Q
    |||||||| ||||| ||| |||||||||| |||| |||| ||||||  |||||| || |||| ||||||| |||||||  |||| ||||  | |||||||    
T  19320382 ttaagcatttaaaacaagtaagttttcataaaaagagttgtgtaatcgttactttatcaaaagtaacattttatatttgcaagacaaaaaatttatttgt 19320283  T
Q  121 atattccttaatcatt 136  Q
    | ||||||||||||||    
T  19320282 agattccttaatcatt 19320267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 137
Target Start/End: Original strand, 2470351 - 2470469
Alignment:
Q  20 tggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattactt-attaaaaataacattctatatttttaagataaaatttctattt 118  Q
    ||||||||||||||||||| | ||||||| || |||||||| | |||| ||||||| |  |||||||| ||  |||||||  |||| ||| |||||||||    
T  2470351 tggttaagcatctaaaataggtaagtttttatgaaaaagttgtataatcattacttgaacaaaaataatatcttatatttcaaagacaaactttctattt 2470450  T
Q  119 gtatattccttaatcattg 137  Q
    |   ||||||||| |||||    
T  2470451 ggtgattccttaaccattg 2470469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 134
Target Start/End: Complemental strand, 17345922 - 17345840
Alignment:
Q  53 aaaaagttatgtaattattactt-attaaaaataacattctatatttttaagataaaatttctatttgtatattccttaatca 134  Q
    |||||||||||||||   ||||| || |||| ||||||| ||||||||||| | ||||||| |||||||  ||||||||||||    
T  17345922 aaaaagttatgtaatcgctacttgatcaaaagtaacattttatatttttaaaacaaaatttttatttgttgattccttaatca 17345840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 155
Target Start/End: Complemental strand, 17835098 - 17834953
Alignment:
Q  11 caaaggcaatggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattactt-attaaaaataacattctatatttttaagataaaa 109  Q
    |||||||| ||||||| |||  |||| |||||||||||||| ||||| |  | |||||||||||| || |||| ||| ||  |||||||  |||| || |    
T  17835098 caaaggcattggttaaacattcaaaacaagcaagttttcatgaaaaaatcgtataattattacttaatcaaaagtaatatcttatatttcaaagacaata 17834999  T
Q  110 tttctatttgtatattccttaatcattgctacgagggcactggtta 155  Q
    || ||||||||| | ||||||| || |||  |||||| ||||||||    
T  17834998 ttgctatttgtagaatccttaaccaatgccccgagggtactggtta 17834953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 136
Target Start/End: Original strand, 2398081 - 2398125
Alignment:
Q  92 tatatttttaagataaaatttctatttgtatattccttaatcatt 136  Q
    |||||||| |||||||| ||||||||| || ||||||||||||||    
T  2398081 tatattttcaagataaattttctatttatagattccttaatcatt 2398125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 139
Target Start/End: Original strand, 37928300 - 37928420
Alignment:
Q  20 tggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattactt-attaaaaataacattctatatttttaagataaaatttctattt 118  Q
    ||||||| |||| |||||||| ||||||| || |||||||| |||||| ||||||| || |||||||||||| |||||||| |||||||||||| |||||    
T  37928300 tggttaaacatccaaaataagtaagtttttataaaaaagttgtgtaataattactttatcaaaaataacattttatattttcaagataaaatttatattt 37928399  T
Q  119 gtatattccttaatcattgct 139  Q
     || |||| |||| |||||||    
T  37928400 atagattctttaaccattgct 37928420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 159
Target Start/End: Complemental strand, 8896702 - 8896571
Alignment:
Q  29 atctaaaataagcaagttttcatcaaaaagttatgtaattattactt-attaaaaataacattctatatttttaagataaaatttctatttgtatattcc 127  Q
    |||||||| ||| |||||||||| ||||| || |||||| ||||| | || |||| ||||||  ||||||||||||| ||||||| |||||||| ||||     
T  8896702 atctaaaacaagtaagttttcatgaaaaaattgtgtaatcattacctgatcaaaagtaacatcttatatttttaagacaaaatttatatttgtagattct 8896603  T
Q  128 ttaatcattgctacgagggcactggttaacaa 159  Q
    |||| ||||| |  ||||||||||||||||||    
T  8896602 ttaaacattgttgtgagggcactggttaacaa 8896571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 136
Target Start/End: Complemental strand, 12810265 - 12810143
Alignment:
Q  15 ggcaatggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattac-ttattaaaaataacattctatatttttaagataaaatttc 113  Q
    |||||||||||| ||||||||| ||||| | |||||| |||||||| |||||||||||| || | |||| ||| ||  ||||||||||||| |||||||     
T  12810265 ggcaatggttaaacatctaaaacaagcatgctttcatgaaaaagttgtgtaattattactttgtcaaaagtaatatcttatatttttaagacaaaatttt 12810166  T
Q  114 tatttgtatattccttaatcatt 136  Q
     |||| || |||| |||||||||    
T  12810165 catttatagattcattaatcatt 12810143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 34993245 - 34993148
Alignment:
Q  16 gcaatggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattatta-cttattaaaaataacattctatatttttaagataaaattt 112  Q
    |||||| |||||||||||||  ||| |||||||||| |||||||| |||||||||||  |||| |||| ||||||  ||||||||||||| |||||||    
T  34993245 gcaatgattaagcatctaaatcaagtaagttttcatgaaaaagttgtgtaattattattttatcaaaagtaacatcttatatttttaagacaaaattt 34993148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 155
Target Start/End: Complemental strand, 31850871 - 31850725
Alignment:
Q  11 caaaggcaatggttaagcatctaaaataagcaag-ttttcatcaaaaagttatgtaattatta-cttattaaaaataacattctatatttttaagataaa 108  Q
    |||||| ||||||||||||||||||| ||| ||| |||| || ||||| ||||||||| ||||  ||||||||| ||||||  ||||||| ||||| |||    
T  31850871 caaaggtaatggttaagcatctaaaacaagtaagttttttatgaaaaaattatgtaatcattattttattaaaagtaacatcttatatttctaagacaaa 31850772  T
Q  109 atttctatttgtatattccttaatcattgctacgagggcactggtta 155  Q
    |||| ||||| |  |||  |||| |||||||  |||||||| |||||    
T  31850771 atttttatttatggattttttaaccattgctctgagggcaccggtta 31850725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 136
Target Start/End: Complemental strand, 1309845 - 1309720
Alignment:
Q  12 aaaggcaatggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattacttattaaaaa-taacattctatatttttaagataaaat 110  Q
    ||||||| ||||||| |||| |||||||  || |||| || ||||| || ||||||  ||| ||  |||||| |||| |  |||||||||||||||||||    
T  1309845 aaaggcattggttaaacatccaaaataaataaatttttatgaaaaaattgtgtaatagttatttgataaaaagtaacgtattatatttttaagataaaat 1309746  T
Q  111 ttctatttgtatattccttaatcatt 136  Q
    ||||||||||| ||||||||| ||||    
T  1309745 ttctatttgtagattccttaaccatt 1309720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 164
Target Start/End: Original strand, 18756945 - 18757008
Alignment:
Q  101 aagataaaatttctatttgtatattccttaatcattgctacgagggcactggttaacaacactc 164  Q
    |||| |||||||||||||||| |||||||||||| ||| | |||||||||||||| ||| ||||    
T  18756945 aagacaaaatttctatttgtagattccttaatcaatgccatgagggcactggttagcaagactc 18757008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 43626345 - 43626464
Alignment:
Q  18 aatggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattac-ttattaaaaataacattctatatttttaagataaaatttctat 116  Q
    ||||||||| ||||||||||||  || |||| || ||||| || |||||||||||| |||| |||||||||||   || |||| |||| ||||||| |||    
T  43626345 aatggttaaacatctaaaataaataaatttttatgaaaaaattgtgtaattattactttataaaaaataacatctaattttttcaagacaaaatttttat 43626444  T
Q  117 ttgtatattccttaatcatt 136  Q
    ||| | ||| ||||||||||    
T  43626445 ttgaagatttcttaatcatt 43626464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 136
Target Start/End: Original strand, 16979937 - 16980059
Alignment:
Q  15 ggcaatggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattact-tattaaaaataacattctatatttttaagataaaatttc 113  Q
    |||| |||||||||||| |||| ||| || |||| || |||||||| ||| |||||||||  || |||| ||||||  |||||||| |||| ||||||||    
T  16979937 ggcattggttaagcatccaaaacaagtaaatttttatgaaaaagttgtgtgattattactcgatcaaaagtaacatcttatattttcaagacaaaatttc 16980036  T
Q  114 tatttgtatattccttaatcatt 136  Q
    || ||||| |||| |||| ||||    
T  16980037 taattgtaaattctttaaccatt 16980059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 117
Target Start/End: Complemental strand, 31487823 - 31487725
Alignment:
Q  20 tggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattactt-attaaaaataacattctatatttttaagataaaatttctatt 117  Q
    ||||||| |||| |||||||  ||||||| |  ||||| || |||||||||||||| || |||||||||||  |||||||  |||||||||||||||||    
T  31487823 tggttaaacatccaaaataaataagtttttaagaaaaaattgtgtaattattacttaataaaaaataacatcttatatttccaagataaaatttctatt 31487725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 131
Target Start/End: Original strand, 19676990 - 19677107
Alignment:
Q  15 ggcaatggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattacttattaaaaa-taacattctatatttttaagataaaatttc 113  Q
    |||| ||||||||||||  ||| |||||||||||  |  ||||| | |||||| |||||||| | |||| ||||||  |||||||| |||| ||||||||    
T  19676990 ggcattggttaagcatcctaaacaagcaagttttggtgtaaaaggtgtgtaatcattacttaatcaaaagtaacatcttatattttcaagacaaaatttc 19677089  T
Q  114 tatttgtatattccttaa 131  Q
    |||||||  |||||||||    
T  19677090 tatttgtcgattccttaa 19677107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 155
Target Start/End: Original strand, 24937827 - 24937967
Alignment:
Q  15 ggcaatggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattactta-ttaaaaataacattctatatttttaagataaaatttc 113  Q
    |||| |||||||| | | |||||||| || |||| || |||||||  ||||||||||||||| |||||| | | | ||||||||||||| | ||| ||||    
T  24937827 ggcattggttaaggaaccaaaataagtaactttttat-aaaaagtggtgtaattattacttaattaaaagtcaaaatctatatttttaaaacaaattttc 24937925  T
Q  114 tatttgtatattccttaatcattgctacgagggcactggtta 155  Q
    ||||| ||  |||||||| ||||||   ||||||||||||||    
T  24937926 tatttatagtttccttaaccattgccctgagggcactggtta 24937967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 25530660 - 25530559
Alignment:
Q  18 aatggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattactt-attaaaaataacattctatatttttaagataaaatttctat 116  Q
    ||||||| |||||| |||| ||  ||||||| || ||||| || |||||| ||||||| || |||  ||||||| ||||||| |||||||||||||||||    
T  25530660 aatggttcagcatccaaaacaaataagtttttatgaaaaaattgtgtaatcattactttatcaaatgtaacattttatatttctaagataaaatttctat 25530561  T
Q  117 tt 118  Q
    ||    
T  25530560 tt 25530559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 138
Target Start/End: Complemental strand, 23142766 - 23142647
Alignment:
Q  20 tggttaagcatctaaaataagcaagttttcatcaaaaa-gttatgtaattattactt-attaaaaataacattctatatttttaagataaaatttctatt 117  Q
    ||||||| |||| |||||||| ||||||| || ||||| ||| |||||| ||||||| || |||||||||||  |||||||  || | ||||||||||||    
T  23142766 tggttaaacatccaaaataagtaagtttttatgaaaaaagttgtgtaataattacttgatcaaaaataacatcttatatttccaa-acaaaatttctatt 23142668  T
Q  118 tgtatattccttaatcattgc 138  Q
    |||| |||  |||||||||||    
T  23142667 tgtagatttattaatcattgc 23142647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 132
Target Start/End: Original strand, 21515022 - 21515132
Alignment:
Q  23 ttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattactt-attaaaaataacattctatatttttaagataaaatttctatttgta 121  Q
    |||||||| ||||||||| |||||||  |  ||||| | ||||||||||| || ||||||| ||||||  | |||||| | | |||||||||||||| ||    
T  21515022 ttaagcatttaaaataagtaagttttggtttaaaaggtgtgtaattattatttgattaaaagtaacatcttgtattttcatgttaaaatttctatttata 21515121  T
Q  122 tattccttaat 132  Q
     ||||||||||    
T  21515122 gattccttaat 21515132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 18221100 - 18221043
Alignment:
Q  20 tggttaagcatctaaaataagcaag-ttttcatcaaaaagttatgtaattattactta 76  Q
    ||||||||||| ||||||||||||| |||| || |||||||| | |||||||||||||    
T  18221100 tggttaagcatttaaaataagcaagttttttatgaaaaagttgtataattattactta 18221043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 130
Target Start/End: Complemental strand, 38995174 - 38995137
Alignment:
Q  93 atatttttaagataaaatttctatttgtatattcctta 130  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  38995174 atatttttaagataaaatttctatttgtagatttctta 38995137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 26613179 - 26613060
Alignment:
Q  20 tggttaagcatctaaaataagcaagttttcatcaaaaa-gttatgtaattattactt-attaaaaataacattctatatttttaagataaaatttctatt 117  Q
    |||||||||||| |||| ||| |||||||||| ||||| |||||||||||||||||| ||||||||||||||| ||||||| | ||| ||||  | ||||    
T  26613179 tggttaagcatccaaaacaagtaagttttcataaaaaaagttatgtaattattacttgattaaaaataacattttatatttctgagacaaaacatttatt 26613080  T
Q  118 tgtatattccttaatcattg 137  Q
    |||| ||||||||| |||||    
T  26613079 tgtagattccttaaccattg 26613060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 131
Target Start/End: Original strand, 48338808 - 48338925
Alignment:
Q  15 ggcaatggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattac-ttattaaaaataacattctatatttttaagataaaatttc 113  Q
    ||||||||||||||||| |||| ||| ||||||| || |||||||| |||||| ||||| |||| |||||||||||  |||||||  |||||||||||||    
T  48338808 ggcaatggttaagcatccaaaacaagtaagtttttataaaaaagttgtgtaataattactttatcaaaaataacatcttatatttccaagataaaatttc 48338907  T
Q  114 tatttgtatattccttaa 131  Q
    ||||| || |||| ||||    
T  48338908 tatttataaattctttaa 48338925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 15 - 138
Target Start/End: Original strand, 38359042 - 38359166
Alignment:
Q  15 ggcaatggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattac-ttattaaaaataacattctatatttttaagataaaatttc 113  Q
    |||||||||||| ||||||||||||| |||||||||| |||||| |  |||||  |||| |||| |||| ||||||  ||||||| |||||||||||||     
T  38359042 ggcaatggttaaacatctaaaataagtaagttttcatgaaaaagatgggtaatcgttactttatcaaaattaacatcttatatttctaagataaaatttt 38359141  T
Q  114 tatttgtatattccttaatcattgc 138  Q
    ||||| || ||||||||| ||||||    
T  38359142 tatttatagattccttaaccattgc 38359166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 155
Target Start/End: Complemental strand, 6785908 - 6785771
Alignment:
Q  20 tggttaagcatctaaaataagcaagttttcatcaaaaa-gttatgtaattattactt-attaaaaataacattctatatttttaagataaaatttctatt 117  Q
    ||||||| |||| |||| |||||||||||||| ||||| | | |||||| ||||||| || |||| ||||||| |||||||| |||| |||| |||||||    
T  6785908 tggttaaacatcaaaaacaagcaagttttcatgaaaaaagatgtgtaatcattacttgatcaaaagtaacattttatattttcaagacaaaaattctatt 6785809  T
Q  118 tgtatattccttaatcattgctacgagggcactggtta 155  Q
    |||| | ||||||| ||||||   ||||||||||||||    
T  6785808 tgtagaatccttaaccattgccctgagggcactggtta 6785771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 23 - 131
Target Start/End: Original strand, 29032415 - 29032524
Alignment:
Q  23 ttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattactt-attaaaaataacattctatatttttaagataaaatttctatttgta 121  Q
    ||||| |||||||| ||||||||||| || |||||||| |||||| ||||||| || |||| ||||||  ||||||||||||| ||||||||| ||||||    
T  29032415 ttaagtatctaaaacaagcaagtttttatgaaaaagttgtgtaatcattacttgatcaaaagtaacatcttatatttttaagacaaaatttctgtttgta 29032514  T
Q  122 tattccttaa 131  Q
     | |||||||    
T  29032515 gaatccttaa 29032524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 131
Target Start/End: Original strand, 49261776 - 49261892
Alignment:
Q  16 gcaatggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattact-tattaaaaataacattctatatttttaagataaaatttct 114  Q
    |||||||||||||||| |||| ||| |  ||||||| ||||| || ||||||||||||| ||| |||| ||||||  |||||||  |||| |||||||||    
T  49261776 gcaatggttaagcatccaaaacaagtacattttcatgaaaaaattgtgtaattattactctatcaaaagtaacatcttatatttacaagacaaaatttct 49261875  T
Q  115 atttgtatattccttaa 131  Q
    ||||||||||| |||||    
T  49261876 atttgtatatttcttaa 49261892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 20 - 150
Target Start/End: Original strand, 4020098 - 4020229
Alignment:
Q  20 tggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattacttattaaaaat-aacattctatatttttaagataaaatttctattt 118  Q
    |||||||| | | |||| ||| ||||||| || ||||| || |||||| |||||||| | ||||| |||||| |||||||| |||| |||||||||||||    
T  4020098 tggttaagtaaccaaaacaagtaagtttttatgaaaaaattgtgtaataattacttaatcaaaattaacattttatattttcaagacaaaatttctattt 4020197  T
Q  119 gtatattccttaatcattgctacgagggcact 150  Q
    ||| ||||||||| |||||   ||||||||||    
T  4020198 gtagattccttaaccattgtcccgagggcact 4020229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 20 - 152
Target Start/End: Complemental strand, 28709679 - 28709546
Alignment:
Q  20 tggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattactt-attaaaaataacattctatatttttaagataaaatttctattt 118  Q
    |||||||||||  |||||||| ||||||  || |||||||| | |||| |||| || || |||| ||||||| |||||||| ||||||||||||||||||    
T  28709679 tggttaagcattcaaaataagtaagtttctataaaaaagttgtataatcattatttgatcaaaagtaacattttatattttcaagataaaatttctattt 28709580  T
Q  119 gtatattccttaatcattgctacgagggcactgg 152  Q
     || |||| |||| ||||||   |||||||||||    
T  28709579 atagattctttaaccattgccctgagggcactgg 28709546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 155
Target Start/End: Complemental strand, 42437832 - 42437693
Alignment:
Q  15 ggcaatggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattacttattaaaaataacattctatatttttaagataaaatttct 114  Q
    |||| |||||||||||| |||| | ||||  ||| || ||||||||||||||| |||||  || |||| ||||||  |||| ||  ||||||||||||||    
T  42437832 ggcattggttaagcatccaaaacacgcaaaattttatgaaaaagttatgtaatcattacg-atcaaaagtaacatcttataattccaagataaaatttct 42437734  T
Q  115 atttgtatattccttaatcattgctacgagggcactggtta 155  Q
    ||||||| | ||||||| ||||||   ||||||||||||||    
T  42437733 atttgtagaatccttaaccattgccctgagggcactggtta 42437693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 50958857 - 50958979
Alignment:
Q  17 caatggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattactt-attaaaaataacattctatatttttaagataaaatttcta 115  Q
    ||||| ||||||||| |||| ||| ||||||| || ||||| || |||||| ||| ||| || |||||||||||  |||||||  |||| ||||||||||    
T  50958857 caatgcttaagcatccaaaacaagtaagtttttatgaaaaaattgtgtaatcatttcttgatcaaaaataacatgttatatttccaagacaaaatttcta 50958956  T
Q  116 tttgtatattccttaatcattgc 138  Q
    |||| | |||| |||||||||||    
T  50958957 tttgaaaattctttaatcattgc 50958979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 136
Target Start/End: Original strand, 44698214 - 44698335
Alignment:
Q  16 gcaatggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattactt-attaaaaataacattctatatttttaagataaaatttct 114  Q
    |||||||||||  |||||||| ||  ||||||| || ||||| || |||||| |||| || || |||| ||||||  |||||||| |||| |||||||||    
T  44698214 gcaatggttaaatatctaaaacaaataagtttttatgaaaaaattgtgtaatcattattttatcaaaagtaacatcttatattttcaagacaaaatttct 44698313  T
Q  115 atttgtatattccttaatcatt 136  Q
    ||||||| ||| ||||| ||||    
T  44698314 atttgtagatttcttaaccatt 44698335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 131
Target Start/End: Original strand, 49710967 - 49711056
Alignment:
Q  42 aagttttcatcaaaaagttatgtaattattacttattaaaaataacattctatatttttaagataaaatttctatttgtatattccttaa 131  Q
    ||||||| || ||||| | || ||||||||| |||| |||||||||||| ||||||| ||||| | || |||||||| || |||||||||    
T  49710967 aagtttttattaaaaattaatataattattatttataaaaaataacattttatatttctaagacagaaattctatttatagattccttaa 49711056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 121
Target Start/End: Complemental strand, 54801448 - 54801341
Alignment:
Q  15 ggcaatggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattac-ttattaaaaataacattctatatttttaagataaaatttc 113  Q
    |||||| |||||||||  |||||||| ||||||| || ||||| || |||||||||||| |||  |||| ||||||  |||||||| |||||||| |||     
T  54801448 ggcaatagttaagcatacaaaataagtaagtttttatgaaaaaattgtgtaattattactttagcaaaagtaacatcttatattttcaagataaattttt 54801349  T
Q  114 tatttgta 121  Q
    ||| ||||    
T  54801348 tatatgta 54801341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 4128811 - 4128726
Alignment:
Q  15 ggcaatggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattac-ttattaaaaataacattctatatttt 99  Q
    ||||||||||||||||| |||| ||| |||||||||| ||||  || |||||| ||||| |||| |||||||| ||  ||||||||    
T  4128811 ggcaatggttaagcatccaaaacaagtaagttttcatgaaaatattgtgtaatcattactttatcaaaaataatatcttatatttt 4128726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 131
Target Start/End: Original strand, 12109653 - 12109762
Alignment:
Q  23 ttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattactta-ttaaaaataacattctatatttttaagataaaatttctatttgta 121  Q
    ||||||||| |||| || ||| |||| || |||||||| | ||||||||||||| |||||| ||| ||  |||||||| || | | ||||||||||||||    
T  12109653 ttaagcatccaaaacaaacaattttttatgaaaaagttgtataattattacttagttaaaagtaatatcttatattttcaaaacataatttctatttgta 12109752  T
Q  122 tattccttaa 131  Q
     | |||||||    
T  12109753 gaatccttaa 12109762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 159
Target Start/End: Complemental strand, 44291347 - 44291204
Alignment:
Q  15 ggcaatggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattacttattaaaaa-taacattctatatttttaagataaaatttc 113  Q
    |||| |||||||||| | |||| ||| |||| || || ||||||| |||||||||||||||| |||||| | ||| | |||||||  |||| | || |||    
T  44291347 ggcattggttaagcacc-aaaagaagtaagtatttattaaaaagtaatgtaattattacttaataaaaagtgacagtttatatttccaagacagaaattc 44291249  T
Q  114 tatttgtatattccttaatcattgctacgagggcactggttaacaa 159  Q
    ||||| || ||||||||| || |||  || ||||||||||||||||    
T  44291248 tatttatagattccttaaccagtgccccg-gggcactggttaacaa 44291204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 49543205 - 49543317
Alignment:
Q  20 tggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattacttatta-aaaataacattctatatttttaagataaaatttctattt 118  Q
    |||||||||||  ||||  || || ||||||| |||||  | |||||| |||||||| || ||||| | ||  |||||||| ||||||||||||||||||    
T  49543205 tggttaagcattcaaaacgagtaaattttcatgaaaaaagtgtgtaataattacttaatataaaatgatatcttatattttaaagataaaatttctattt 49543304  T
Q  119 gtatattccttaa 131  Q
    ||| |||| ||||    
T  49543305 gtaaattcattaa 49543317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 138
Target Start/End: Original strand, 27544591 - 27544708
Alignment:
Q  22 gttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattactt-attaaaaataacattctatatttttaagataaaatttctatttgt 120  Q
    ||||| |||| |||| ||| || ||||||| |||||||| |||||| ||||| | || |||||||||||  |||||||| ||||||||||||||||||||    
T  27544591 gttaaacatccaaaacaagtaaattttcatgaaaaagttgtgtaatcattacatgataaaaaataacatcttatattttcaagataaaatttctatttgt 27544690  T
Q  121 atattccttaatcattgc 138  Q
    | |||||||| |||||||    
T  27544691 agattccttagtcattgc 27544708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 15 - 131
Target Start/End: Complemental strand, 30293941 - 30293824
Alignment:
Q  15 ggcaatggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattactt-attaaaaataacattctatatttttaagataaaatttc 113  Q
    |||| ||||||| |||  |||| || ||||||||||| ||||| ||||||||| ||||||| || |||| ||||||  ||||||||||||| ||||||||    
T  30293941 ggcactggttaaccattcaaaacaaacaagttttcatgaaaaaattatgtaatcattacttgatcaaaagtaacatcttatatttttaagacaaaatttc 30293842  T
Q  114 tatttgtatattccttaa 131  Q
    |||||||| |||| ||||    
T  30293841 tatttgtagattctttaa 30293824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 137
Target Start/End: Original strand, 7718547 - 7718608
Alignment:
Q  76 attaaaaataacattctatatttttaagataaaatttctatttgtatattccttaatcattg 137  Q
    ||||||||||||||  ||||||||||||||||||||| |||||  || ||| ||||||||||    
T  7718547 attaaaaataacatcttatatttttaagataaaatttatatttccatgttcgttaatcattg 7718608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 36482052 - 36482168
Alignment:
Q  20 tggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattactt-attaaaaataacattctatatttttaagataaaatttctattt 118  Q
    ||||||| ||||||||||||  |||||||||| |||||||| |||||  |||| || || |||| ||||||  |||||||| || | |||||||||||||    
T  36482052 tggttaaacatctaaaataat-aagttttcataaaaaagttgtgtaaacattatttgatcaaaagtaacatcttatattttcaaaacaaaatttctattt 36482150  T
Q  119 gtatattccttaatcatt 136  Q
    ||| |||| |||| ||||    
T  36482151 gtagattcattaaccatt 36482168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 144
Target Start/End: Original strand, 4350892 - 4350983
Alignment:
Q  53 aaaaagttatgtaattattacttattaaaaataacattctatatttttaagataaaatttctatttgtatattccttaatcattgctacgag 144  Q
    |||||||| |||||| ||||  ||| |||||||| | | |||||||| |||||||||||| | ||| || ||||||||| ||||||| ||||    
T  4350892 aaaaagttgtgtaatcattatatataaaaaataataatttatattttcaagataaaatttttgtttataaattccttaaccattgctccgag 4350983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 6646286 - 6646428
Alignment:
Q  18 aatggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattac-ttattaaaaataacattctatatttttaagataaaatttctat 116  Q
    |||| |||| ||||||||| ||| || | || || ||||| || |||||| ||||| |||| |||| ||||||  |||||||  || |||||| || |||    
T  6646286 aatgtttaaacatctaaaacaagtaaatattaatgaaaaaattgtgtaatcattacattatcaaaagtaacatattatatttcaaatataaaaattttat 6646385  T
Q  117 ttgtatattccttaatcattgctacgagggcactggttaacaa 159  Q
    |||||||||  ||||||||||||   ||||||| |||||||||    
T  6646386 ttgtatattatttaatcattgctctaagggcaccggttaacaa 6646428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 159
Target Start/End: Complemental strand, 8151885 - 8151768
Alignment:
Q  45 ttttcatcaaaaagttatgtaattatta--ctt-attaaaaataacattctatatttttaagataaaatttctatttgtatattccttaatcattgctac 141  Q
    ||||||| |||||||||| |||||||||  ||| ||||||| ||||||  |||||||| || | |||||||||| || || ||||||||| ||| ||       
T  8151885 ttttcataaaaaagttatataattattatacttgattaaaagtaacatcttatattttcaaaacaaaatttctacttataaattccttaaccatggccct 8151786  T
Q  142 gagggcactggttaacaa 159  Q
    ||| ||||||||||||||    
T  8151785 gagagcactggttaacaa 8151768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 115
Target Start/End: Original strand, 16611525 - 16611603
Alignment:
Q  38 aagcaagttttcatcaaaaagttatgtaattattactt-attaaaaataacattctatatttttaagataaaatttcta 115  Q
    ||||||||||| || ||||| | || |||||||||||| || ||||| ||| || |||||||||||||||||| |||||    
T  16611525 aagcaagtttttattaaaaaataatataattattacttgatgaaaaacaacgttttatatttttaagataaaaattcta 16611603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 17 - 155
Target Start/End: Original strand, 12094955 - 12095094
Alignment:
Q  17 caatggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattactt-attaaaaataacattctatatttttaagataaaatttcta 115  Q
    ||||| |||| |||| |||||||| ||||||| || |||||||| |||||| ||||||| || |||| ||| ||  |||||||| ||   ||||||||||    
T  12094955 caatgtttaaacatccaaaataagtaagtttttatgaaaaagttgtgtaatcattactttatcaaaagtaatatcttatattttcaatgcaaaatttcta 12095054  T
Q  116 tttgtatattccttaatcattgctacgagggcactggtta 155  Q
    |||||| |||||||||  |||||  |||||||||||||||    
T  12095055 tttgtagattccttaactattgccccgagggcactggtta 12095094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 53 - 137
Target Start/End: Complemental strand, 43970126 - 43970041
Alignment:
Q  53 aaaaagttatgtaattattactta-ttaaaaataacattctatatttttaagataaaatttctatttgtatattccttaatcattg 137  Q
    ||||| || |||||||||||| || |||||| ||||||  ||||||||||||||||||||| |||| |||||||||||||| ||||    
T  43970126 aaaaaattgtgtaattattacataattaaaagtaacatcttatatttttaagataaaatttatattcgtatattccttaattattg 43970041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 56 - 128
Target Start/End: Original strand, 44190255 - 44190328
Alignment:
Q  56 aagttatgtaattattactt-attaaaaataacattctatatttttaagataaaatttctatttgtatattcct 128  Q
    |||||||||||||||||||| || |||| ||||||  |||||||| |||||||||||| |||||||||||||||    
T  44190255 aagttatgtaattattacttgatcaaaagtaacatcttatattttcaagataaaatttatatttgtatattcct 44190328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 138
Target Start/End: Complemental strand, 31991580 - 31991452
Alignment:
Q  11 caaaggcaatggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattac-ttattaaaaataacattctatatttttaagataaaa 109  Q
    |||||||||||||||| ||| ||||||||| || ||||||| ||||| |  |||||||||||| |||| |||||||||||  |||||||| ||   ||||    
T  31991580 caaaggcaatggttaaacatataaaataagtaaattttcatgaaaaaatcgtgtaattattactttatcaaaaataacatcttatattttcaaagcaaaa 31991481  T
Q  110 tttctatttgtatattccttaatcattgc 138  Q
    ||| || ||||  ||||||||| ||||||    
T  31991480 tttttaattgtggattccttaaccattgc 31991452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 54 - 137
Target Start/End: Complemental strand, 37431861 - 37431777
Alignment:
Q  54 aaaagttatgtaattattactta-ttaaaaataacattctatatttttaagataaaatttctatttgtatattccttaatcattg 137  Q
    ||||||| || |||||||||||| |||||| ||||||  |||| |||||||||||||||| |||||||| ||||||| |||||||    
T  37431861 aaaagttgtgcaattattacttaattaaaagtaacatcttataattttaagataaaatttttatttgtaaattcctttatcattg 37431777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 28176778 - 28176892
Alignment:
Q  22 gttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattacttattaaaaataacattctatatttttaagataaaatttctatttgta 121  Q
    ||||||||||||||| ||  ||||||| || |||||| | |||||| |||| ||  | ||||||| ||  ||||||| ||||||||||||||||||||||    
T  28176778 gttaagcatctaaaacaatgaagttttaatgaaaaagatgtgtaatcattattttatcaaaataatatcttatatttctaagataaaatttctatttgta 28176877  T
Q  122 tattccttaatcatt 136  Q
     ||| ||||| ||||    
T  28176878 aatttcttaaccatt 28176892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 62 - 152
Target Start/End: Original strand, 37183080 - 37183171
Alignment:
Q  62 tgtaattattactt-attaaaaataacattctatatttttaagataaaatttctatttgtatattccttaatcattgctacgagggcactgg 152  Q
    |||||| ||||||| || |||||||||||  ||||||| |||||||| |||| ||||| |||| |||||||||| ||| | |||||||||||    
T  37183080 tgtaatcattacttgatcaaaaataacatattatatttataagataagatttttatttttataatccttaatcaatgccatgagggcactgg 37183171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 136
Target Start/End: Original strand, 20775063 - 20775189
Alignment:
Q  11 caaaggcaatggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattactt-attaaaaataacattctatatttttaagataaaa 109  Q
    ||||| || |||||||||||| |||| ||| ||||||| || ||||||||||||||| |||| || || |||||||| ||  ||||||| ||||| |||     
T  20775063 caaagacattggttaagcatccaaaacaagtaagtttttatgaaaaagttatgtaataattatttgatcaaaaataatatcttatatttctaagacaaat 20775162  T
Q  110 tttctatttgtatattccttaatcatt 136  Q
    ||| ||||| || |||| |||| ||||    
T  20775163 tttttatttatagattcattaaccatt 20775189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 138
Target Start/End: Complemental strand, 31089875 - 31089779
Alignment:
Q  42 aagttttcatcaaaaagttatgtaattattactt-attaaaaataacattctatatttttaagataaaatttctatttgtatattccttaatcattgc 138  Q
    ||||||| || |||||||| |||||| ||||||| || |||| ||||||| |||||||   ||| |||||||||||| ||| ||||||||||||||||    
T  31089875 aagtttttatgaaaaagttgtgtaatcattactttatcaaaagtaacatt-tatatttcctagacaaaatttctattggtagattccttaatcattgc 31089779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 131
Target Start/End: Original strand, 48419068 - 48419185
Alignment:
Q  15 ggcaatggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattactt-attaaaaataacattctatatttttaagataaaatttc 113  Q
    |||||| ||||||||| ||||| ||| |||||||||| |||||||| || ||| ||||||| || |||| |||  || || ||||  || | ||||||||    
T  48419068 ggcaatagttaagcatataaaacaagtaagttttcatgaaaaagttgtgcaatcattactttatcaaaagtaaagttttacatttccaaaacaaaatttc 48419167  T
Q  114 tatttgtatattccttaa 131  Q
    |||||||| |||||||||    
T  48419168 tatttgtagattccttaa 48419185  T

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Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 138
Target Start/End: Original strand, 27284067 - 27284191
Alignment:
Q  15 ggcaatggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattactt-attaaaaataacattctatatttttaagataaaatttc 113  Q
    |||| ||||||| |||| |||||||  ||||||| || |||||||| || ||| |||| || || |||| ||||||  |||||||  |||| ||||||||    
T  27284067 ggcattggttaaacatccaaaataaataagtttttataaaaaagttgtgcaatcattatttgatcaaaagtaacatcttatatttccaagacaaaatttc 27284166  T
Q  114 tatttgtatattccttaatcattgc 138  Q
    ||| |||| ||||||||| ||||||    
T  27284167 tatatgtagattccttaaccattgc 27284191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 112
Target Start/End: Original strand, 18093682 - 18093741
Alignment:
Q  54 aaaagttatgtaattattactta-ttaaaaataacattctatatttttaagataaaattt 112  Q
    ||||||| ||||||||||| ||| |||||||||| | | |||||||||||||||||||||    
T  18093682 aaaagttgtgtaattattatttaattaaaaataaaactttatatttttaagataaaattt 18093741  T

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Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 136
Target Start/End: Original strand, 28740280 - 28740403
Alignment:
Q  15 ggcaatggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattactt-attaaaaataacattctatatttttaagataaaatttc 113  Q
    ||||||| |||| ||||||||| ||  ||||||| || |||||| |  ||||| ||||||| || ||||||| |||  |||||||| ||||||||||||     
T  28740280 ggcaatgattaatcatctaaaacaaataagttttaatgaaaaagatgcgtaatcattactttatcaaaaatatcatcttatattttcaagataaaattta 28740379  T
Q  114 tatttgtata-ttccttaatcatt 136  Q
    ||||| |||| |||||||| ||||    
T  28740380 tatttatatacttccttaaccatt 28740403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 129
Target Start/End: Complemental strand, 55126896 - 55126781
Alignment:
Q  16 gcaatggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattatta-cttattaaaaa-taacattctatatttttaagataaaatttc 113  Q
    |||||||||||| |||||||||||  ||||||| || |||||||| |||||| ||||  |||| ||||| ||||||| |||||||| || | ||||  |     
T  55126896 gcaatggttaagtatctaaaataaataagtttttatgaaaaagttgtgtaatcattattttatcaaaaagtaacattttatattttcaaaacaaaaaatt 55126797  T
Q  114 tatttgtatattcctt 129  Q
    |||||||| |||||||    
T  55126796 tatttgtagattcctt 55126781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 137
Target Start/End: Original strand, 27133549 - 27133667
Alignment:
Q  20 tggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattactt-attaaaaataacattctatatttttaagataaaatttctattt 118  Q
    ||||||||||||||||||| | ||||||| || |||||||| | |||| ||||||| |  |||||||| ||  |||||||  |||| ||| |||||||||    
T  27133549 tggttaagcatctaaaataggtaagtttttatgaaaaagttgtataatcattacttgaacaaaaataatatcttatatttcaaagacaaactttctattt 27133648  T
Q  119 gtatattccttaatcattg 137  Q
    |   ||||||||| |||||    
T  27133649 ggtgattccttaaccattg 27133667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 131
Target Start/End: Complemental strand, 2824926 - 2824817
Alignment:
Q  23 ttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattactt-attaaaaataacattctatatttttaagataaaatttctatttgta 121  Q
    |||||||||||||| ||||||||||| || |||| ||| |||||| ||||||| || |||| ||||||  ||||||   |||| |||| | |||||||||    
T  2824926 ttaagcatctaaaacaagcaagtttttatgaaaatgttgtgtaatcattacttgatcaaaagtaacatcttatattcccaagacaaaagtgctatttgta 2824827  T
Q  122 tattccttaa 131  Q
     | |||||||    
T  2824826 gaatccttaa 2824817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 136
Target Start/End: Complemental strand, 22612014 - 22611893
Alignment:
Q  17 caatggttaagcatctaaaataagcaagttttcatcaaaaag-ttatgtaattattactt-attaaaaataacattctatatttttaagataaaatttct 114  Q
    ||||||||||| || ||||||||| ||||||  || |||||  ||  ||||| ||||||| ||  ||| ||||||  ||||||||||||| ||||||| |    
T  22612014 caatggttaagtatttaaaataagtaagtttaaataaaaaaaattgagtaatcattactttatcgaaagtaacatcttatatttttaagacaaaatttat 22611915  T
Q  115 atttgtatattccttaatcatt 136  Q
    ||||||| ||| ||||||||||    
T  22611914 atttgtagatttcttaatcatt 22611893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 138
Target Start/End: Complemental strand, 31089574 - 31089510
Alignment:
Q  74 ttattaaaaataacattctatatttttaagataaaatttctatttgtatattccttaatcattgc 138  Q
    |||| |||| ||||||  ||||||||| ||| ||||||| ||||| || ||||||||||||||||    
T  31089574 ttatcaaaagtaacatcttatattttttagacaaaatttttatttatagattccttaatcattgc 31089510  T

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Target: scaffold0039 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 137
Target Start/End: Complemental strand, 30108 - 29982
Alignment:
Q  12 aaaggcaatggttaagcatctaaaataagcaagttttcatcaaaaagttatgtaattattactta-ttaaaaataacattctatatttttaagataaaat 110  Q
    ||||||| ||||||| ||   |||| ||| ||||||| || ||||  || ||||||||||| ||| |||||| ||||||  |||||||| || ||||| |    
T  30108 aaaggcattggttaaacactcaaaacaagtaagtttttatgaaaagtttgtgtaattattatttaattaaaagtaacatcttatattttcaaaataaagt 30009  T
Q  111 ttctatttgtatattccttaatcattg 137  Q
    ||||||||||| |||||||||| ||||    
T  30008 ttctatttgtagattccttaattattg 29982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 92 - 139
Target Start/End: Original strand, 120742 - 120789
Alignment:
Q  92 tatatttttaagataaaatttctatttgtatattccttaatcattgct 139  Q
    |||||||| |||| |||||||||||||||| ||||||||| |||||||    
T  120742 tatattttcaagacaaaatttctatttgtagattccttaaccattgct 120789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 134
Target Start/End: Complemental strand, 28929 - 28847
Alignment:
Q  53 aaaaagttatgtaattattactt-attaaaaataacattctatatttttaagataaaatttctatttgtatattccttaatca 134  Q
    |||||||  |||||| ||||||| || ||||| |||||  ||||| | ||||| |||||||||||||||| ||||||||||||    
T  28929 aaaaagtggtgtaatcattactttatcaaaaagaacatattatatctataagacaaaatttctatttgtagattccttaatca 28847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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