View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3546_high_4 (Length: 676)
Name: NF3546_high_4
Description: NF3546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3546_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 263 - 601
Target Start/End: Original strand, 34413721 - 34414059
Alignment:
| Q |
263 |
gaagtgtacattgtttcctttccaaacttgatagagccttctgtttttaagattggaagtttccactgaggcagccacagaagaggagggagaggaggcc |
362 |
Q |
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| T |
34413721 |
gaagtgtacattgtttcctttccaaacttgatagagccttctgtttttaagattggaagtttccactgaggcagccacagaagaggagggagaggaggcc |
34413820 |
T |
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| Q |
363 |
aaatgattatgtttggtgctcataatggcctataatatataaaactattgactatatgttccttctgcaatgatgtctcctataatttgcaaaaacccac |
462 |
Q |
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| T |
34413821 |
aaatgattatgtttggtgctcataatggcctataatatataaaactattgactatatgttccttctgcaatgatgtctcctataatttgcaaaaacccac |
34413920 |
T |
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| Q |
463 |
atatgttgttaatgttgttcttggcattaagatttttgctttcttgttatttcttccctcacccttttaggtgagagattaattggccgtggttgatgaa |
562 |
Q |
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| T |
34413921 |
atatgttgttaatgttgttcttggcattaagatttttgctttcttgttatttcttccctcacccttttaggtgagagattaattggccgtggttgatgaa |
34414020 |
T |
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| Q |
563 |
gaagaagaagggaattcaatttcccttctcactttctta |
601 |
Q |
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| T |
34414021 |
gaagaagaagggaattcaatttcccttctcactttctta |
34414059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 17 - 192
Target Start/End: Original strand, 34413475 - 34413650
Alignment:
| Q |
17 |
attaaataccaaaatcttcaaaggtttcatttttgcaccccatacaccatcaaatacctcaaaatgtgcctatgccaaccaataacctcaaaaacactaa |
116 |
Q |
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| T |
34413475 |
attaaataccaaaatcttcaaaggtttcatttttgcaccccatacaccatcaaatacctcaaaatgtgcctatgccaaccaataacctcaaaaacactaa |
34413574 |
T |
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| Q |
117 |
ttgnnnnnnnnnnnnnnccctcaatcttttctggcatgggaaaagaaccaattcacacaagatattgattttgatc |
192 |
Q |
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| T |
34413575 |
ttgttttttcattttttccctcaatcttttctggcatgggaaaagaaccaattcacacaagatattgatattgatc |
34413650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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