View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3546_high_40 (Length: 326)
Name: NF3546_high_40
Description: NF3546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3546_high_40 |
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Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 13 - 310
Target Start/End: Complemental strand, 8001242 - 8000945
Alignment:
| Q |
13 |
aaaataacgattcttgataaaaatcaacgacaaatcacatagtgatatcaacaatgtttaaagcagaaactacaaaggaaaggaaacaaacctattaggc |
112 |
Q |
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| T |
8001242 |
aaaataacgattcttgataaaaatcaatgacaaatcacatagtgatatcatcaatgtttaaagcagaaactacaaaggaaaggaaacaaacctattaggc |
8001143 |
T |
|
| Q |
113 |
ctgagcaatgaccgaacaacttgcgcagctttcagcctctgtttcacatcaagataactggaaggttcatcaaacatgtatatctcagcattttggatgg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8001142 |
ctgagcaatgaccgaacaacttgcgcagctttcagcctctgtttcacatcaagataactggaaggttcatcaaacatgtatatctcagcattttggatgg |
8001043 |
T |
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| Q |
213 |
caacaactgcaatggcaaacctttggagctcacccccagaaagatcaccaacattacgatctataacttgattaagctcgagatcagcacaaagtttt |
310 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8001042 |
caacaactgcaatggcaaacctttggagctcaccccctgaaagatcaccaacattacgatctataacttgattaagctcgagatcagcacaaagtttt |
8000945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 13 - 303
Target Start/End: Original strand, 7907105 - 7907395
Alignment:
| Q |
13 |
aaaataacgattcttgataaaaatcaacgacaaatcacatagtgatatcaacaatgtttaaagcagaaactacaaaggaaaggaaacaaacctattaggc |
112 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7907105 |
aaaataacgattcttgataaaaatcaatgacaaatcacatagtgatatcaacaatgtttaaagcagaaactacaaaggaaaggaaacaaacctattaggc |
7907204 |
T |
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| Q |
113 |
ctgagcaatgaccgaacaacttgcgcagctttcagcctctgtttcacatcaagataactggaaggttcatcaaacatgtatatctcagcattttggatgg |
212 |
Q |
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| T |
7907205 |
ctgagcaatgaccgaacaacttgcgcagctttcagcctctgtttcacatcaagataactggaaggttcatcaaacatgtatatctcagcattttggatgg |
7907304 |
T |
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| Q |
213 |
caacaactgcaatggcaaacctttggagctcacccccagaaagatcaccaacattacgatctataacttgattaagctcgagatcagcaca |
303 |
Q |
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| T |
7907305 |
caacaactgcaatggcaaacctttggagctcaccccctgaaagatcaccaacattacgatctataacttgattaagttcaagatcagcaca |
7907395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 24 - 306
Target Start/End: Complemental strand, 51516531 - 51516250
Alignment:
| Q |
24 |
tcttgataaaaatcaacgacaaatcacatagtgatatcaacaatgtttaaagcagaaactacaaaggaaaggaaacaaacctattaggcctgagcaatga |
123 |
Q |
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|||||| ||||||||| |||| ||||||||||||||| ||| | |||||||||| ||||| |||||| ||| |||||||||||||||||||||||| |
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| T |
51516531 |
tcttgacaaaaatcaatgacagtgcacatagtgatatcacaaatatataaagcagaagctacagaggaaattaaa-aaacctattaggcctgagcaatga |
51516433 |
T |
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| Q |
124 |
ccgaacaacttgcgcagctttcagcctctgtttcacatcaagataactggaaggttcatcaaacatgtatatctcagcattttggatggcaacaactgca |
223 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
51516432 |
tcgaacaacttgggcagctttcagcctctgtttcacatcaagataactggaaggttcatcaaacatgtatatctcagcattttggatggcaacaaccgca |
51516333 |
T |
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| Q |
224 |
atggcaaacctttggagctcacccccagaaagatcaccaacattacgatctataacttgattaagctcgagatcagcacaaag |
306 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
51516332 |
atggcaaacctttggagctcaccccctgaaagatcaccaacattacgatctataacttgattaagctcaagatcagcacaaag |
51516250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 158; Significance: 5e-84; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 50 - 306
Target Start/End: Original strand, 1302544 - 1302801
Alignment:
| Q |
50 |
catagtgatatcaacaatgtttaaagcagaaactacaaagg-aaaggaaacaaacctattaggcctgagcaatgaccgaacaacttgcgcagctttcagc |
148 |
Q |
| |
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||||||||||| ||||| |||||||||||| ||||| | ||| ||||| |||||||| |||| ||||||||||| |||||||| |||||||||||| |
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| T |
1302544 |
catagtgatattgacaatatttaaagcagaagctacagatataaaataaacagacctattatgccttagcaatgaccggacaacttgggcagctttcagc |
1302643 |
T |
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| Q |
149 |
ctctgtttcacatcaagataactggaaggttcatcaaacatgtatatctcagcattttggatggcaacaactgcaatggcaaacctttggagctcacccc |
248 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||| |||||||||| |
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| T |
1302644 |
ctctgtttcacatcaagataactagaaggttcatcaaacatgtatatctccgcattttggatggcaatacctgcaatggcaaacctttgaagctcacccc |
1302743 |
T |
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| Q |
249 |
cagaaagatcaccaacattacgatctataacttgattaagctcgagatcagcacaaag |
306 |
Q |
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| ||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
1302744 |
ctgaaagatcaacaacattacgatctataacttgattaagctcaagagcagcacaaag |
1302801 |
T |
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