View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3546_high_45 (Length: 290)
Name: NF3546_high_45
Description: NF3546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3546_high_45 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 23 - 268
Target Start/End: Complemental strand, 35965636 - 35965391
Alignment:
| Q |
23 |
ataatcaattctaaatacaaaatcaattatactaataaaaagtgaaaccaaacatacatttactattccagctggactcaaccacccaactgaaagtgtg |
122 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35965636 |
ataatcaattctaaatacaaaatcaattatactaacaaaaagtgaaaccaaacatacatttactattccagctggactcaaccacccaactgaaagtgtg |
35965537 |
T |
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| Q |
123 |
tgtttattttcagctaacctaaatgtttgtgtttttctgacacataatctagacatctacgtgaattgtttagttccatagactcataaacagtccaagt |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
35965536 |
tgtttattttcagctaacctaaatgtttgtgtttttctgacacataatctagacatctacgtaaattgtttagttccatagactcataaacagtccaagt |
35965437 |
T |
|
| Q |
223 |
tgttaaatatttggtcctctcccctattaaccgcgaatattcacca |
268 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35965436 |
tgttaaatatttggtcctctcccctattaaccgcgaatattcacca |
35965391 |
T |
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