View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3546_high_47 (Length: 282)

Name: NF3546_high_47
Description: NF3546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3546_high_47
NF3546_high_47
[»] chr4 (4 HSPs)
chr4 (13-262)||(19226606-19226855)
chr4 (47-99)||(20251146-20251196)
chr4 (56-99)||(965360-965404)
chr4 (53-96)||(48780181-48780222)
[»] chr8 (1 HSPs)
chr8 (48-99)||(12729141-12729190)
[»] chr3 (6 HSPs)
chr3 (50-96)||(33709572-33709619)
chr3 (48-97)||(23686025-23686072)
chr3 (48-97)||(24058262-24058309)
chr3 (52-99)||(50914726-50914771)
chr3 (47-98)||(8433158-8433209)
chr3 (48-98)||(52653524-52653572)
[»] chr1 (2 HSPs)
chr1 (48-98)||(49053555-49053603)
chr1 (48-98)||(49061135-49061183)
[»] chr7 (3 HSPs)
chr7 (48-98)||(30109836-30109885)
chr7 (48-95)||(1840401-1840448)
chr7 (48-96)||(24870114-24870162)
[»] chr5 (2 HSPs)
chr5 (48-98)||(28274147-28274197)
chr5 (48-96)||(36202866-36202912)
[»] chr2 (1 HSPs)
chr2 (48-96)||(34681420-34681466)


Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 262
Target Start/End: Complemental strand, 19226855 - 19226606
Alignment:
Q  13 cataggagatttaaacatttgtgtgctttgtaagatgtgagagaaattttcaaaatatatatttggaaagttgcaatggttaaatagtgactatataatt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  19226855 cataggagatttaaacatttgtgtgctttgtaagatgtgagagaaatttccaaaatatatatttggaaagttgcaatggttaaatagtaactatataatt 19226756  T
Q  113 attatgatattatatgaaattagaaaaatcgtcaagatatgagacgaagtctttccatatctgatgaagtgccccgtaatttggattcttaatcgagcgt 212  Q
    ||||||||| |||||||||||||||||||||  ||||| |||||||||||||||||||||||||||| ||| ||||||||||   |||||||||||||||    
T  19226755 attatgataatatatgaaattagaaaaatcgctaagatgtgagacgaagtctttccatatctgatgatgtgtcccgtaatttaagttcttaatcgagcgt 19226656  T
Q  213 agtttttagagtgatggaaaatggacctagccttcttatttatgaccata 262  Q
    | |||| |||||||||||||||||||||| ||||||||||||||||||||    
T  19226655 aattttcagagtgatggaaaatggacctaaccttcttatttatgaccata 19226606  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 99
Target Start/End: Original strand, 20251146 - 20251196
Alignment:
Q  47 atgtgagagaaattttcaaaatatatatttggaaagttgcaatggttaaatag 99  Q
    |||||||||||||||| |||||||  ||||||||||||||||| |||||||||    
T  20251146 atgtgagagaaatttttaaaatat--atttggaaagttgcaattgttaaatag 20251196  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 99
Target Start/End: Original strand, 965360 - 965404
Alignment:
Q  56 aaattttc-aaaatatatatttggaaagttgcaatggttaaatag 99  Q
    |||||||| |||||||| ||||| |||||||||||||||||||||    
T  965360 aaattttctaaaatataaatttgaaaagttgcaatggttaaatag 965404  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 96
Target Start/End: Complemental strand, 48780222 - 48780181
Alignment:
Q  53 gagaaattttcaaaatatatatttggaaagttgcaatggttaaa 96  Q
    ||||||||||||||||||||  |||||||||||||||| |||||    
T  48780222 gagaaattttcaaaatatat--ttggaaagttgcaatgattaaa 48780181  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 48 - 99
Target Start/End: Original strand, 12729141 - 12729190
Alignment:
Q  48 tgtgagagaaattttcaaaatatatatttggaaagttgcaatggttaaatag 99  Q
    |||||||||||||| ||||||||  |||||||||||||||||||||||||||    
T  12729141 tgtgagagaaatttccaaaatat--atttggaaagttgcaatggttaaatag 12729190  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 96
Target Start/End: Original strand, 33709572 - 33709619
Alignment:
Q  50 tgagagaaattttcaaaata-tatatttggaaagttgcaatggttaaa 96  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||||    
T  33709572 tgagagaaatttccaaaataatatatttggaaagttgcaatggttaaa 33709619  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 23686025 - 23686072
Alignment:
Q  48 tgtgagagaaattttcaaaatatatatttggaaagttgcaatggttaaat 97  Q
    |||||||||||||| ||||||||  |||||||||||||||||||||||||    
T  23686025 tgtgagagaaatttccaaaatat--atttggaaagttgcaatggttaaat 23686072  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 24058262 - 24058309
Alignment:
Q  48 tgtgagagaaattttcaaaatatatatttggaaagttgcaatggttaaat 97  Q
    |||||||||||||| ||||||||  |||||||||||||||||||||||||    
T  24058262 tgtgagagaaatttccaaaatat--atttggaaagttgcaatggttaaat 24058309  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 99
Target Start/End: Complemental strand, 50914771 - 50914726
Alignment:
Q  52 agagaaattttcaaaatatatatttggaaagttgcaatggttaaatag 99  Q
    |||||||||||||||||||||  ||| |||||||||||||||||||||    
T  50914771 agagaaattttcaaaatatat--ttgaaaagttgcaatggttaaatag 50914726  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 98
Target Start/End: Complemental strand, 8433209 - 8433158
Alignment:
Q  47 atgtgagagaaattttcaaaatatatatttggaaagttgcaatggttaaata 98  Q
    ||||||||| ||||| ||||||||| | ||| ||||||||||||||||||||    
T  8433209 atgtgagaggaatttccaaaatataaacttgaaaagttgcaatggttaaata 8433158  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 98
Target Start/End: Original strand, 52653524 - 52653572
Alignment:
Q  48 tgtgagagaaattttcaaaatatatatttggaaagttgcaatggttaaata 98  Q
    |||||||||||||| ||||||||  |||||||||||||||||| |||||||    
T  52653524 tgtgagagaaatttccaaaatat--atttggaaagttgcaatgattaaata 52653572  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 98
Target Start/End: Original strand, 49053555 - 49053603
Alignment:
Q  48 tgtgagagaaattttcaaaatatatatttggaaagttgcaatggttaaata 98  Q
    |||||||||||||| ||||||||  ||||||||||||||||||||||||||    
T  49053555 tgtgagagaaatttccaaaatat--atttggaaagttgcaatggttaaata 49053603  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 98
Target Start/End: Original strand, 49061135 - 49061183
Alignment:
Q  48 tgtgagagaaattttcaaaatatatatttggaaagttgcaatggttaaata 98  Q
    |||||||||||||| ||||||||  ||||||||||||||||||||||||||    
T  49061135 tgtgagagaaatttccaaaatat--atttggaaagttgcaatggttaaata 49061183  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 98
Target Start/End: Complemental strand, 30109885 - 30109836
Alignment:
Q  48 tgtgagagaaattttcaaaatatatatttggaaagttgcaatggttaaata 98  Q
    |||||||||| ||| |||||||||||||| |||||||||||||||||||||    
T  30109885 tgtgagagaa-tttccaaaatatatatttagaaagttgcaatggttaaata 30109836  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 95
Target Start/End: Original strand, 1840401 - 1840448
Alignment:
Q  48 tgtgagagaaattttcaaaatatatatttggaaagttgcaatggttaa 95  Q
    |||||||| |||||| |||||||| ||||| |||||||||||||||||    
T  1840401 tgtgagagtaatttttaaaatataaatttgaaaagttgcaatggttaa 1840448  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 24870114 - 24870162
Alignment:
Q  48 tgtgagagaaattttcaaaatatatatttggaaagttgcaatggttaaa 96  Q
    |||||||| ||  ||||||||||| ||||||||||||| ||||||||||    
T  24870114 tgtgagagtaagattcaaaatataaatttggaaagttgtaatggttaaa 24870162  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 98
Target Start/End: Complemental strand, 28274197 - 28274147
Alignment:
Q  48 tgtgagagaaattttcaaaatatatatttggaaagttgcaatggttaaata 98  Q
    ||||||||||| || ||||||||| ||||||||||||||||||||| ||||    
T  28274197 tgtgagagaaacttccaaaatataaatttggaaagttgcaatggttgaata 28274147  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 36202866 - 36202912
Alignment:
Q  48 tgtgagagaaattttcaaaatatatatttggaaagttgcaatggttaaa 96  Q
    ||||||||||||||| |||||||||  ||| ||||||||||||||||||    
T  36202866 tgtgagagaaatttttaaaatatat--ttgaaaagttgcaatggttaaa 36202912  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 34681466 - 34681420
Alignment:
Q  48 tgtgagagaaattttcaaaatatatatttggaaagttgcaatggttaaa 96  Q
    |||||||||||||||||||||  |||||||||| |||||||||||||||    
T  34681466 tgtgagagaaattttcaaaat--atatttggaatgttgcaatggttaaa 34681420  T

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