View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3546_high_51 (Length: 273)
Name: NF3546_high_51
Description: NF3546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3546_high_51 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 11 - 257
Target Start/End: Original strand, 1034218 - 1034466
Alignment:
| Q |
11 |
aaggttggaagtggaacctccatatttaataagttttttctccttgcaaatttgttcacttaattaagaattttgttgcttatagtagcattttttatcc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1034218 |
aaggttggaagtggaacctccatatttaataagttttttctccttgcaaatttgttcacttaattaagaattttgttgcttatagtagcattttttatcc |
1034317 |
T |
|
| Q |
111 |
atactagcttcactgctacgacacac--tgtgtaaactattatgtacctgatattttataccaaatgagctttgtgtttgataggttcctggaattaaag |
208 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
1034318 |
atactagcttcactgctacgacacacagtgtgtaaactattatgtacctgatattttataccatatgagctttgtgtttgataggttcctggaattaaag |
1034417 |
T |
|
| Q |
209 |
agaagaagtgtattagaaaatggagaaaaactcatagtagccatcattt |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1034418 |
agaagaagtgtattagaaaatggagaaaaactcatagtagccatcattt |
1034466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University