View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3546_high_52 (Length: 271)

Name: NF3546_high_52
Description: NF3546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3546_high_52
NF3546_high_52
[»] chr5 (1 HSPs)
chr5 (13-270)||(8830618-8830875)
[»] chr1 (5 HSPs)
chr1 (19-93)||(44002825-44002899)
chr1 (13-86)||(43910199-43910272)
chr1 (19-93)||(43984817-43984891)
chr1 (19-89)||(43918835-43918904)
chr1 (19-208)||(43989091-43989274)


Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 13 - 270
Target Start/End: Original strand, 8830618 - 8830875
Alignment:
Q  13 aatatggtaagcaaaacaataagtcagtggcttgatttgttcagacaaaacagtgaagaaatagccaaatcaagcaacaaactagccaactcaaagcaca 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8830618 aatatggtaagcaaaacaataagtcagtggcttgatttgttcagacaaaacagtgaagaaatagccaaatcaagcaacaaactagccaactcaaagcaca 8830717  T
Q  113 aaaacagtgaataaatacaaatcaagtaacaaaaatagcatatctagaaatcctaaagcaacaaacttgccaaatcaagaaaaaacaaacaacaaattat 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  8830718 aaaacagtgaataaatacaaatcaagtaacaaaaatagcatatcttgaaatcctaaagcaaaaaacttgccaaatcaagaaaaaacaaacaacaaattat 8830817  T
Q  213 gaaggagaatgtgtgtgaaagagcagaagcagcatagaaggagtggacggcatagaca 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8830818 gaaggagaatgtgtgtgaaagagcagaagcagcatagaaggagtggacggcatagaca 8830875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 44002825 - 44002899
Alignment:
Q  19 gtaagcaaaacaataagtcagtggcttgatttgttcagacaaaacagtgaagaaatagccaaatcaagcaacaaa 93  Q
    |||||||||||| ||||||| || || ||||||||||  ||||||||||||||||||||||||||||||||||||    
T  44002825 gtaagcaaaacagtaagtcactgactagatttgttcaagcaaaacagtgaagaaatagccaaatcaagcaacaaa 44002899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 43910272 - 43910199
Alignment:
Q  13 aatatggtaagcaaaacaataagtcagtggcttgatttgttcagacaaaacagtgaagaaatagccaaatcaag 86  Q
    ||||| ||||| ||||||||||||| ||||||||||||||||| || |||||||||||||||||| ||||||||    
T  43910272 aatatagtaagaaaaacaataagtcggtggcttgatttgttcaaactaaacagtgaagaaatagcaaaatcaag 43910199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 43984817 - 43984891
Alignment:
Q  19 gtaagcaaaacaataagtcagtggcttgatttgttcagacaaaacagtgaagaaatagccaaatcaagcaacaaa 93  Q
    |||||||||||| ||||||  || |  |||||||||| |||||||||||||||||||||||||||||||||||||    
T  43984817 gtaagcaaaacagtaagtcgttgacaagatttgttcaaacaaaacagtgaagaaatagccaaatcaagcaacaaa 43984891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 43918904 - 43918835
Alignment:
Q  19 gtaagcaaaacaataagtcagtggcttgatttgttcagacaaaacagtgaagaaatagccaaatcaagcaa 89  Q
    ||||||||||||  ||||||||||||| ||||||| | |||||| ||||||||||||||||||||||||||    
T  43918904 gtaagcaaaacag-aagtcagtggcttcatttgtttaaacaaaagagtgaagaaatagccaaatcaagcaa 43918835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 208
Target Start/End: Original strand, 43989091 - 43989274
Alignment:
Q  19 gtaagcaaaacaataagtcagtggcttgatttgttcagacaaaacagtgaagaaatagccaaatcaagcaacaaactagccaactcaaagcacaaaaaca 118  Q
    ||||||||| || ||  |||||||||  ||||||| | |||||| |||||||||||||||||||||| ||||||||||||||| ||||  ||| |||| |    
T  43989091 gtaagcaaagcagtagatcagtggctacatttgttaa-acaaaagagtgaagaaatagccaaatcaa-caacaaactagccaaatcaagacac-aaaata 43989187  T
Q  119 gtgaataaatacaaatcaagtaacaaaa-atagcatatctagaaatcctaaagcaacaaacttgccaaatcaagaaaaaacaaacaacaaa 208  Q
    ||||  ||| ||||| |||| ||||||| |||| | || |    ||  | ||||||||||||||| || ||||||||||| ||||||||||    
T  43989188 gtgagcaaagacaaaacaagaaacaaaatataggagattt----atattgaagcaacaaacttgcgaattcaagaaaaaataaacaacaaa 43989274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University