View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3546_high_55 (Length: 265)
Name: NF3546_high_55
Description: NF3546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3546_high_55 |
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Alignment Details
Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 41 - 124
Target Start/End: Complemental strand, 2015770 - 2015687
Alignment:
| Q |
41 |
gatataacaagaaataaggttgatgccgaaaattcacaataggtcagaggtgggagaagacatgatcttttgaagaatattaag |
124 |
Q |
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| T |
2015770 |
gatataacaagaaataaggttgatgccgaaaattcacaatgggtcagaggtgggagaagacatgatcttttgaagaatattaag |
2015687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 203 - 252
Target Start/End: Complemental strand, 2015607 - 2015558
Alignment:
| Q |
203 |
ccaatgctagatggcaactacatgaaattcgagacatacataataataat |
252 |
Q |
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| T |
2015607 |
ccaatgctagatggcaactacatgaaattcgagacatacataataataat |
2015558 |
T |
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