View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3546_high_60 (Length: 250)
Name: NF3546_high_60
Description: NF3546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3546_high_60 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 10416490 - 10416252
Alignment:
| Q |
1 |
cctcagagtaagtgcattactctttaacttaaccagtttttatctatctatattcaaattttgaatgtcgatacttgcaatacaatcatcataattgcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10416490 |
cctcagagtaagtgcattactctttaacttaaccagtttttatctatctatattcaaattttgaatgtcgatacttgcaatacaatcatcataattgcaa |
10416391 |
T |
|
| Q |
101 |
ccacattttctcggcgtctccaatctctacggtcaaaagttggtcgtcggctgcaaaggatggagacgctgaagaggatgcgagctcaattaattttgaa |
200 |
Q |
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|||||| |||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
10416390 |
ccacatcttctcggcgtctccaatctctatggtcaaaagttgggggccggctgcaaaggatggagacgctgaagaggatgcgagctcaattaattctgaa |
10416291 |
T |
|
| Q |
201 |
tttgaatcccattttgagtcttactactcagatattcat |
239 |
Q |
| |
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|||||||||||||| ||||||||||||||| |||||||| |
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| T |
10416290 |
tttgaatcccatttcgagtcttactactcatatattcat |
10416252 |
T |
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