View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3546_high_63 (Length: 249)
Name: NF3546_high_63
Description: NF3546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3546_high_63 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 11 - 249
Target Start/End: Original strand, 51223078 - 51223316
Alignment:
| Q |
11 |
cacagacagttacttgtagaagaagttatcagtgagtgaagcttgtgtagattcaggaacacattagataggtggacattagtgtgaaaatatgcattta |
110 |
Q |
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| T |
51223078 |
cacaggcagttacttgtagaagaagttatcagtgagtgaagcttgtgtagattcaggaacacattagataggtggacattagtgtgaaaatatgcattta |
51223177 |
T |
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| Q |
111 |
aacgcgacgataagtgttcaacattgttcagagcaaagtttatgtaagtggtggtttcaaatgtgaaggcaaggaagaccatgaaattcggctttaaaag |
210 |
Q |
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| T |
51223178 |
aacgcgacgataagtgttcaacattgttcagagcaaagtttatgtaagtggtggtttcaaatgtgaaggcaaggaagaccatgaaattcagctttaaaag |
51223277 |
T |
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| Q |
211 |
ttgcttcaattgttaaattgagtttcagagtttttaagt |
249 |
Q |
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| T |
51223278 |
ttgcttcaattgttaaattgagtttcagagtttttaagt |
51223316 |
T |
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