View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3546_high_64 (Length: 249)
Name: NF3546_high_64
Description: NF3546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3546_high_64 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 37462390 - 37462159
Alignment:
| Q |
1 |
tagcagccaaggttcaactgtatatttaccattttcagtgtattttgtatgttttcattaatctaatcctaaggtacatgcaattaaatcaatttttcaa |
100 |
Q |
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| T |
37462390 |
tagcagccaaggttcaactgtatatttaccattttcagtgtatttcgtatgttttcattaatctaatcctaaggtacatgcaattaaatcaatttttcaa |
37462291 |
T |
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| Q |
101 |
tcattactggcttacctctgccaaagacagactaagatccttcctaatagcttcttgagttggagatgaatatccagcctgaaaaaacaaaataacaaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37462290 |
tcattactggcttacctctgccaaagacagactaagatccttcctaatagcttcttgagttggagatgaatatccagcctgaaaaaacaaaataacaaca |
37462191 |
T |
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| Q |
201 |
attccacagagaaattaaacacatactctata |
232 |
Q |
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|||||| ||||||||||||||||||||||||| |
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| T |
37462190 |
attccaaagagaaattaaacacatactctata |
37462159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 103 - 192
Target Start/End: Original strand, 37592067 - 37592156
Alignment:
| Q |
103 |
attactggcttacctctgccaaagacagactaagatccttcctaatagcttcttgagttggagatgaatatccagcctgaaaaaacaaaa |
192 |
Q |
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||||||||||||||||| ||||||||||| |||||||| |||| ||||| ||||||| |||||||||||| |||| ||| |||||||||| |
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| T |
37592067 |
attactggcttacctcttccaaagacagattaagatccctcctgatagcatcttgagctggagatgaatacccagtctggaaaaacaaaa |
37592156 |
T |
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