View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3546_high_7 (Length: 557)
Name: NF3546_high_7
Description: NF3546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3546_high_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 101; Significance: 8e-50; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 36 - 156
Target Start/End: Original strand, 8466623 - 8466743
Alignment:
| Q |
36 |
tagatatgagtgtttaataaacattgcctacgtagaaaacttaaaagttgctgagtattgaaatgtcaccgttcatctcaaagaatgaactttccctgag |
135 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
8466623 |
tagatatgaatgtttaataaacattacctacgtagaaaacttaaaagttgttgagtattgaaatgtcaccggtcatctcaaagaatgaacttttcctgag |
8466722 |
T |
|
| Q |
136 |
ttaagatgctcagataaatta |
156 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
8466723 |
ttaagatgctcagataaatta |
8466743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 390 - 487
Target Start/End: Original strand, 8467399 - 8467496
Alignment:
| Q |
390 |
tgcagcattagcttttctacccctcttattagtagtagacttaatggacttgctcttcttattcacaaccttcttcttaccaccaaccgttccatttg |
487 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
8467399 |
tgcagcattagcttttctacccctcttattagtagtagacttaatggacttgctcttcttattcacaaccttcttcttaccaccaaccgttgcatttg |
8467496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 281 - 360
Target Start/End: Original strand, 8467320 - 8467399
Alignment:
| Q |
281 |
tagctgcgagtactacaaagagacttcaggccaaaaaacagttatcatattcacacatactatattacatagtttcagtt |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8467320 |
tagctgcgagtactacaaagagacttcaggccaaaaaacagttatcatattcacacatactatattacatagtttcagtt |
8467399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 187 - 265
Target Start/End: Original strand, 8467198 - 8467276
Alignment:
| Q |
187 |
attagtccgcacattctcaatgatacaggaaattcatcccacaatttaaatcagaacaaaaatagcaaaaggatgtctc |
265 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8467198 |
attagtccgcacattctcaatgatacagaaaattcatcccacaatttaaatcagaacaaaaatagcaaaaggatgtctc |
8467276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 152 - 190
Target Start/End: Original strand, 8467152 - 8467190
Alignment:
| Q |
152 |
aattattaatacatgcactttgattgtcacagtgaatta |
190 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
8467152 |
aattattaatacttgcactttgattgtcatagtgaatta |
8467190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University