View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3546_high_70 (Length: 241)
Name: NF3546_high_70
Description: NF3546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3546_high_70 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 52102794 - 52103017
Alignment:
| Q |
1 |
taaattaaatcttaatatgttattatccaattcaacattgccacgtcatcaaggtcattaacaagagaacacatcaacaaaattaaactcaaaagtgcaa |
100 |
Q |
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| T |
52102794 |
taaattaaatcttaatatgttattatccaattcaacattgccacgtcatcaaatgtattaacaagagaacacatcaacaaaattaaactaaaaagtgca- |
52102892 |
T |
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| Q |
101 |
tatttgagcctatatttaaaattaggtgaaggaaatgcatgtgtag---attcatttagttaccattccagcagtgcatgaattgagaagaatgcaagca |
197 |
Q |
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| T |
52102893 |
--tttgagcctatattttaaattaggtgaaggaaatgcatgtgtagtagattcatttagttaccattccagcagtgcatgaattgagaagaatgcaagca |
52102990 |
T |
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| Q |
198 |
acaactgcaccaagtaactgtgcaatc |
224 |
Q |
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| T |
52102991 |
acaactgcaccaagtaactgtgcaatc |
52103017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 224
Target Start/End: Complemental strand, 7655767 - 7655699
Alignment:
| Q |
156 |
gttaccattccagcagt-gcatgaattgagaagaatgcaagcaacaactgcaccaagtaactgtgcaatc |
224 |
Q |
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| T |
7655767 |
gttaccattccaccagtagca-gacttgagaagaatacaagcaacaactgaaccaagtaactgtgcaatc |
7655699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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