View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3546_high_74 (Length: 235)
Name: NF3546_high_74
Description: NF3546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3546_high_74 |
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Alignment Details
Target: chr5 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 13 - 217
Target Start/End: Original strand, 8830848 - 8831045
Alignment:
| Q |
13 |
agcacagaaggagtggacggcatagacaaagtgaaggagaaggtgtgggatgacatgattgtggttcgaagaaggaggaggagaagcctgtgaagtgtga |
112 |
Q |
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| T |
8830848 |
agcatagaaggagtggacggcatagacacagtgaaggagaaggtgtgggatgacatgattgtggttcgaagaaggaggaggagaagcctgcgaagtgtga |
8830947 |
T |
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| Q |
113 |
ggattttgtttttgttaagacgcatattacttacattaggcagtaccttttaaggaaacgaatctcctcaggtgggtgggttcataagtaaaatctgtca |
212 |
Q |
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| T |
8830948 |
ggtttttgtttttgttaagacacatattacttacattaggcag-------taaggaaacgaatctcctcaggtgggtgggttcataagtaaaatctgtca |
8831040 |
T |
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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 93
Target Start/End: Original strand, 43985044 - 43985092
Alignment:
| Q |
45 |
gaaggagaaggtgtgggatgacatgattgtggttcgaagaaggaggagg |
93 |
Q |
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| T |
43985044 |
gaaggagaaggcgtgggatgacatgatcatgggtcgaagaaggaggagg |
43985092 |
T |
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