View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3546_high_75 (Length: 227)
Name: NF3546_high_75
Description: NF3546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3546_high_75 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 43862252 - 43862446
Alignment:
| Q |
19 |
gattgtacttttgcagtttgatgaaactagcttgctgttcaggcatgcatgcagagattgaccagcctttaatccacatgcagctgcttacaagatttta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43862252 |
gattgtacttttgcagtttgatgaaactagctagctgttcaggcatgcatgcagagattgaccagcctttaatccacatgcagctgcttacaagatttta |
43862351 |
T |
|
| Q |
119 |
atttgtttggcatgttagattagttatctatgataacaaaattttatggaattataactttgtttaactttttcatggtcttcgagaaattttag |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43862352 |
atttgtttggcatgttagattagttatctatgataacaaaattttatggaattataactttgtttaactttttcatggtcttcgagaaattttag |
43862446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University