View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3546_low_1 (Length: 744)

Name: NF3546_low_1
Description: NF3546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3546_low_1
NF3546_low_1
[»] chr4 (10 HSPs)
chr4 (8-725)||(7029479-7030194)
chr4 (533-725)||(7022724-7022916)
chr4 (533-632)||(7006165-7006264)
chr4 (533-632)||(7042530-7042629)
chr4 (532-648)||(7015899-7016015)
chr4 (533-632)||(7058598-7058697)
chr4 (533-622)||(6997402-6997491)
chr4 (533-626)||(7049689-7049782)
chr4 (533-632)||(7008011-7008110)
chr4 (364-444)||(14458555-14458632)
[»] chr6 (4 HSPs)
chr6 (389-498)||(13099705-13099814)
chr6 (389-500)||(13109522-13109633)
chr6 (202-255)||(9401801-9401854)
chr6 (415-444)||(10741788-10741817)
[»] scaffold0025 (2 HSPs)
scaffold0025 (393-495)||(154554-154656)
scaffold0025 (389-500)||(153358-153469)
[»] scaffold0499 (1 HSPs)
scaffold0499 (389-495)||(5350-5456)


Alignment Details
Target: chr4 (Bit Score: 631; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 631; E-Value: 0
Query Start/End: Original strand, 8 - 725
Target Start/End: Complemental strand, 7030194 - 7029479
Alignment:
Q  8 atcatcattaagccccttgtaaggattcaaacaaacataaaataagacatgaacaatttgagataaaaaatagctaccattccaactgcagagaatacaa 107  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |    
T  7030194 atcatcatttagccccttgtaaggattcaaacaaacataaaataagacatgaacaatttgagataaaaaatagctaccattccatctgcagagaatacca 7030095  T
Q  108 acaaaggtgaaagcattcaagattcaacaagcacaaccaacttccaaccaatcttcaatcaaaataaccgatcactcaaaaactaagcaaacacattccc 207  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  7030094 acaaaggtgaaagcattcgagattcaacaagcacaac-aacttccaaccaaacttcaatcaaaataaccgatcactcaaaaaataagcaaacacattccc 7029996  T
Q  208 aaatatttgggagctcaacaacggaaggcacaaatagttcaaggaggaccaaacaatgctctttatacaatac-atgttaacaaaatagggtttcagaga 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  7029995 aaatatttgggagctcaacaacggaaggcacaaatagttcaaggaggaccaaacaatgctctttatacaatacgatgttaacaaaatagggtttcagaga 7029896  T
Q  307 atagcacaataacgacggctagggtttccaataaaattacaatgacattactgtcataaggttacaacataatttatataaaaacctaatggactctact 406  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7029895 atagcacaataacgacgactagggtttccaataaaattacaatgacattactgtcataaggttacaacataatttatataaaaacctaatggactctact 7029796  T
Q  407 aacttaaaaatataaagacccaataacttaagcccaatcttattatttaatacctcccctcaaacttacgatgcaacaacattaagcattaagtaagagt 506  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||    
T  7029795 aacttaaaaatataaagacccaataacttaagcccaatcttattatttaatacctcccctcaaacttaggatgcaacaacattaagca--aagtaagagt 7029698  T
Q  507 ttgtcaaatnnnnnnncgaaggcaaattacaaaggcaaattagatgtccacctggtgaacatggctaaacattgctcaggagtgactgcaggagctgtat 606  Q
    |||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7029697 ttgtcaaataaaaaaacgaaggcaaattacaaaggcaaattagatgtccacctggtgaacatggctaaacattgctcaggagtgactgcaggagctgtat 7029598  T
Q  607 gtcctgaaccctgcaaaattaattacccaaaatttgatataacaaattagcacagtcatatcaaagatgcttagtgcttgtttggattgggttatatttt 706  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  7029597 gtcctgaaccctgcaaaattaattacccaaaaattgatataacaaattagcacagtcacatcaaagatgcttagtgcttgtttggattgggttatatttt 7029498  T
Q  707 gaaattatctgatgatata 725  Q
    |||||||||||||||||||    
T  7029497 gaaattatctgatgatata 7029479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 533 - 725
Target Start/End: Complemental strand, 7022916 - 7022724
Alignment:
Q  533 ttacaaaggcaaattagatgtccacctggtgaacatggctaaacattgctcaggagtgactgcaggagctgtatgtcctgaaccctgcaaaattaattac 632  Q
    ||||||||||||||||||| ||||||| ||||||||||| |||||||| |||||||   | |||||||||||||||||||||||||||||||||||||||    
T  7022916 ttacaaaggcaaattagatatccacctagtgaacatggcaaaacattgttcaggagcatccgcaggagctgtatgtcctgaaccctgcaaaattaattac 7022817  T
Q  633 ccaaaatttgatataacaaattagcacagtcatatcaaagatgcttagtgcttgtttggattgggttatattttgaaattatctgatgatata 725  Q
    |||||| ||||||| ||||||||||| | ||| ||||||||||||||||||||||||||||||| |||||||||||  |||| || |||||||    
T  7022816 ccaaaaattgatatcacaaattagcataatcacatcaaagatgcttagtgcttgtttggattggcttatattttgagtttatatgctgatata 7022724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 533 - 632
Target Start/End: Complemental strand, 7006264 - 7006165
Alignment:
Q  533 ttacaaaggcaaattagatgtccacctggtgaacatggctaaacattgctcaggagtg-actgcaggagctgtatgtcctgaaccctgcaaaattaatta 631  Q
    ||||||||||||||||||| ||||||| ||||||||||  |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  7006264 ttacaaaggcaaattagatatccacctagtgaacatgggaaaacattgctcaggagtgtact-caggagctgtatgtcctgaaccctgcaaaattaatta 7006166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 533 - 632
Target Start/End: Complemental strand, 7042629 - 7042530
Alignment:
Q  533 ttacaaaggcaaattagatgtccacctggtgaacatggctaaacattgctcaggagtg-actgcaggagctgtatgtcctgaaccctgcaaaattaatta 631  Q
    ||||||||||||||||||| ||||||| ||||||||||  |||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||    
T  7042629 ttacaaaggcaaattagatatccacctagtgaacatgggaaaacattgctcaggagtgtact-caggagctgtatgtcccgaaccctgcaaaattaatta 7042531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 532 - 648
Target Start/End: Complemental strand, 7016015 - 7015899
Alignment:
Q  532 attacaaaggcaaattagatgtccacctggtgaacatggctaaacattgctcaggagtg-actgcaggagctgtatgtcctgaaccctgcaaaattaatt 630  Q
    |||||||||| ||||||||| ||||||| ||||||||| | |||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  7016015 attacaaaggtaaattagatatccacctagtgaacatgccaaaacattgatcaggagtgtact-caggagctgtatgtcctgaaccctgcaaaattaatt 7015917  T
Q  631 acccaaaatttgatataa 648  Q
    |  ||||| | |||||||    
T  7015916 aatcaaaagtcgatataa 7015899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 533 - 632
Target Start/End: Complemental strand, 7058697 - 7058598
Alignment:
Q  533 ttacaaaggcaaattagatgtccacctggtgaacatggctaaacattgctcaggagtg-actgcaggagctgtatgtcctgaaccctgcaaaattaatta 631  Q
    ||||||||||||||||||| ||||||| ||||||||||  |||||| ||||||||||| ||| |||||||| ||||||||||||||||||||||||||||    
T  7058697 ttacaaaggcaaattagatatccacctagtgaacatgggaaaacatagctcaggagtgtact-caggagctatatgtcctgaaccctgcaaaattaatta 7058599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 533 - 622
Target Start/End: Complemental strand, 6997491 - 6997402
Alignment:
Q  533 ttacaaaggcaaattagatgtccacctggtgaacatggctaaacattgctcaggagtg-actgcaggagctgtatgtcctgaaccctgcaa 622  Q
    |||||||||||| |||||| ||||||| ||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  6997491 ttacaaaggcaagttagatatccacctagtgaacatggcaaaacattgctcaggagtgtact-caggagctgtatgtcctgaaccctgcaa 6997402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 533 - 626
Target Start/End: Complemental strand, 7049782 - 7049689
Alignment:
Q  533 ttacaaaggcaaattagatgtccacctggtgaacatggctaaacattgctcaggagtg-actgcaggagctgtatgtcctgaaccctgcaaaatt 626  Q
    ||||||||||||||||||| ||||||| | ||||||||  |||||| ||||||||||| ||| |||||||| |||||||||||||||||||||||    
T  7049782 ttacaaaggcaaattagatatccacctagagaacatgggaaaacatagctcaggagtgtact-caggagctatatgtcctgaaccctgcaaaatt 7049689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 533 - 632
Target Start/End: Complemental strand, 7008110 - 7008011
Alignment:
Q  533 ttacaaaggcaaattagatgtccacctggtgaacatggctaaacattgctcaggagtg-actgcaggagctgtatgtcctgaaccctgcaaaattaatta 631  Q
    ||||||| ||||||||||| |||||||   ||||||||  |||||||||||||||||| |||  ||||||| ||||||| ||||||||||||||||||||    
T  7008110 ttacaaacgcaaattagatatccacctaaggaacatgggaaaacattgctcaggagtgtact-aaggagctatatgtccagaaccctgcaaaattaatta 7008012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 364 - 444
Target Start/End: Complemental strand, 14458632 - 14458555
Alignment:
Q  364 aaggttacaacataatttatataaaaacctaatggactctactaacttaaaaatataaagacccaataacttaagcccaat 444  Q
    |||||||||| | ||| ||||||||| |||||| ||||  |||||||||  ||||||||||| ||||| ||||||||||||    
T  14458632 aaggttacaagagaatgtatataaaa-cctaatagact--actaacttagtaatataaagacacaatagcttaagcccaat 14458555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 3e-19; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 389 - 498
Target Start/End: Complemental strand, 13099814 - 13099705
Alignment:
Q  389 aacctaatggactctactaacttaaaaatataaagacccaataacttaagcccaatcttattatttaatacctcccctcaaacttacgatgcaacaacat 488  Q
    |||||||||||||||| ||  ||||||| |||||| ||||||| | ||||||||||| |||||||||| ||||||| |||||   | ||||||||||||     
T  13099814 aacctaatggactctagtaggttaaaaacataaaggcccaatagcataagcccaatcatattatttaacacctcccatcaaatccatgatgcaacaacag 13099715  T
Q  489 taagcattaa 498  Q
    ||||||||||    
T  13099714 taagcattaa 13099705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 389 - 500
Target Start/End: Complemental strand, 13109633 - 13109522
Alignment:
Q  389 aacctaatggactctactaacttaaaaatataaagacccaataacttaagcccaatcttattatttaatacctcccctcaaacttacgatgcaacaacat 488  Q
    |||||||||||||||||||  |||||||  ||||| ||||||| | ||||| || ||||||||||||| | ||||||||||| | | ||||||||||||     
T  13109633 aacctaatggactctactaggttaaaaacgtaaaggcccaatagcataagctcagtcttattatttaacatctcccctcaaattcatgatgcaacaacag 13109534  T
Q  489 taagcattaagt 500  Q
    ||| ||| ||||    
T  13109533 taaacatcaagt 13109522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 202 - 255
Target Start/End: Complemental strand, 9401854 - 9401801
Alignment:
Q  202 attcccaaatatttgggagctcaacaacggaaggcacaaatagttcaaggagga 255  Q
    |||||||||| ||||||| ||||||||||||||  |||||||||||||||||||    
T  9401854 attcccaaatttttgggaactcaacaacggaagagacaaatagttcaaggagga 9401801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 415 - 444
Target Start/End: Complemental strand, 10741817 - 10741788
Alignment:
Q  415 aatataaagacccaataacttaagcccaat 444  Q
    ||||||||||||||||||||||||||||||    
T  10741817 aatataaagacccaataacttaagcccaat 10741788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 393 - 495
Target Start/End: Original strand, 154554 - 154656
Alignment:
Q  393 taatggactctactaacttaaaaatataaagacccaataacttaagcccaatcttattatttaatacctcccctcaaacttacgatgcaacaacattaag 492  Q
    |||||||||| ||||  |||||||||||||||||||||| | ||||||||||| |||||||||| | ||||||| ||| |   |||||||||||| ||||    
T  154554 taatggactcaactaggttaaaaatataaagacccaatagcataagcccaatcgtattatttaacatctcccctaaaattctggatgcaacaacagtaag 154653  T
Q  493 cat 495  Q
    |||    
T  154654 cat 154656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 389 - 500
Target Start/End: Original strand, 153358 - 153469
Alignment:
Q  389 aacctaatggactctactaacttaaaaatataaagacccaataacttaagcccaatcttattatttaatacctcccctcaaacttacgatgcaacaacat 488  Q
    ||||||||||||||||| |  |||||||  ||||| ||||||| | |||||||| ||||||||||||| | |||||| |||| | | ||||||||||||     
T  153358 aacctaatggactctaccaggttaaaaacgtaaaggcccaatagcataagcccagtcttattatttaacatctccccgcaaattcatgatgcaacaacag 153457  T
Q  489 taagcattaagt 500  Q
    ||| ||| ||||    
T  153458 taaacatcaagt 153469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0499 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 389 - 495
Target Start/End: Original strand, 5350 - 5456
Alignment:
Q  389 aacctaatggactctactaacttaaaaatataaagacccaataacttaagcccaatcttattatttaatacctcccctcaaacttacgatgcaacaacat 488  Q
    |||||||||||||||| ||  ||||||| |||||| ||||||| | ||||||||||| |||||||||  ||||||| ||||| | |   ||||||||||     
T  5350 aacctaatggactctagtaggttaaaaacataaaggcccaatagcataagcccaatcatattatttaccacctcccatcaaattcattttgcaacaacag 5449  T
Q  489 taagcat 495  Q
    |||||||    
T  5450 taagcat 5456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University