View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3546_low_11 (Length: 511)
Name: NF3546_low_11
Description: NF3546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3546_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 41013874 - 41014060
Alignment:
| Q |
19 |
acttgaagagtggctagttagggtgctactgtctagtgctttgaaaaggactgaaacgtgaaagtccatgacaagttaggagcataacaacataaagaaa |
118 |
Q |
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| T |
41013874 |
acttgaagagtggctagttagggtgctactgtctagtgctttgaaaaggactgaaacgtgaaagtccatgacaagttaggagcataacaacataaagaaa |
41013973 |
T |
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| Q |
119 |
cgttttcttctaagaaatctcaattgtttcaattttttctttaggaacaacatattttaattttcatctatacttttgggcagtcct |
205 |
Q |
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| T |
41013974 |
cgttttcttctaagaaatctcaattgtttcaattttttctttaggaacaacatattttaattttcatctatacttttgggcagtcct |
41014060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 336 - 491
Target Start/End: Original strand, 22575642 - 22575797
Alignment:
| Q |
336 |
ttcgtgtccctttgaatttatcttagttggttgagacattgcataataaaggagcccacttatttaacttaagaggcgaatttcgtaaatggactatttg |
435 |
Q |
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|||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
22575642 |
ttcgtgtccccttgaatttaccttagttggttgagacattgcataatacaggagcccacttattcaacttaagaggcgaatttcgtaaatggactatttg |
22575741 |
T |
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| Q |
436 |
acnnnnnnntttgttaattggttcgtgttacattaggtatatttcaataggagtat |
491 |
Q |
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| T |
22575742 |
acaaaaaaatttgttaattggttcgtgttacattaggtatatttcaataggagtat |
22575797 |
T |
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