View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3546_low_12 (Length: 511)

Name: NF3546_low_12
Description: NF3546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3546_low_12
NF3546_low_12
[»] chr6 (12 HSPs)
chr6 (13-303)||(22575263-22575553)
chr6 (415-504)||(23124178-23124267)
chr6 (415-505)||(17352864-17352954)
chr6 (412-505)||(25056303-25056394)
chr6 (449-506)||(9341251-9341308)
chr6 (452-505)||(11646296-11646349)
chr6 (322-354)||(22575543-22575575)
chr6 (422-505)||(2595371-2595453)
chr6 (451-506)||(13697944-13697999)
chr6 (448-505)||(31192300-31192357)
chr6 (469-505)||(1190376-1190412)
chr6 (449-505)||(12170149-12170205)
[»] chr1 (18 HSPs)
chr1 (411-505)||(925234-925329)
chr1 (413-505)||(15874767-15874859)
chr1 (415-505)||(12779924-12780013)
chr1 (411-504)||(23773605-23773698)
chr1 (410-506)||(33934393-33934489)
chr1 (422-505)||(17580075-17580158)
chr1 (447-504)||(4575290-4575347)
chr1 (412-505)||(52043018-52043110)
chr1 (459-511)||(9306065-9306117)
chr1 (409-505)||(17875019-17875115)
chr1 (449-505)||(25825182-25825238)
chr1 (415-507)||(44922866-44922958)
chr1 (415-505)||(34747543-34747633)
chr1 (440-502)||(31530170-31530232)
chr1 (459-505)||(43578229-43578275)
chr1 (410-511)||(16823820-16823921)
chr1 (410-506)||(27904573-27904670)
chr1 (425-502)||(50944346-50944423)
[»] chr8 (13 HSPs)
chr8 (409-505)||(14976077-14976174)
chr8 (411-505)||(20286739-20286832)
chr8 (411-505)||(21073368-21073461)
chr8 (449-505)||(16326425-16326481)
chr8 (420-505)||(19369045-19369131)
chr8 (412-505)||(29039383-29039475)
chr8 (419-505)||(33480625-33480708)
chr8 (448-505)||(15044519-15044576)
chr8 (413-466)||(33192723-33192776)
chr8 (449-505)||(15919770-15919826)
chr8 (449-505)||(30134286-30134342)
chr8 (415-511)||(30800768-30800864)
chr8 (446-502)||(45356694-45356750)
[»] chr2 (22 HSPs)
chr2 (419-506)||(35126170-35126257)
chr2 (412-505)||(13837503-13837595)
chr2 (409-505)||(31593752-31593848)
chr2 (449-511)||(20972934-20972996)
chr2 (409-505)||(5879895-5879989)
chr2 (412-505)||(42185020-42185113)
chr2 (412-505)||(45406712-45406805)
chr2 (411-505)||(27597036-27597130)
chr2 (420-505)||(22882177-22882262)
chr2 (448-505)||(36080020-36080077)
chr2 (449-505)||(963479-963535)
chr2 (410-502)||(27912811-27912903)
chr2 (414-505)||(16039095-16039186)
chr2 (424-506)||(9243891-9243973)
chr2 (419-505)||(10552702-10552787)
chr2 (422-504)||(24004806-24004888)
chr2 (411-505)||(33676958-33677051)
chr2 (451-505)||(39271857-39271911)
chr2 (414-468)||(42651403-42651457)
chr2 (439-489)||(42949691-42949741)
chr2 (449-505)||(34063066-34063122)
chr2 (449-505)||(43798944-43799000)
[»] chr3 (19 HSPs)
chr3 (410-505)||(611415-611510)
chr3 (411-505)||(45885650-45885744)
chr3 (409-505)||(42392147-42392243)
chr3 (449-503)||(50650630-50650684)
chr3 (420-504)||(38809568-38809652)
chr3 (449-505)||(49758636-49758692)
chr3 (451-505)||(17589942-17589995)
chr3 (415-505)||(18956711-18956801)
chr3 (412-505)||(24487571-24487664)
chr3 (449-505)||(29626056-29626112)
chr3 (413-505)||(45702282-45702373)
chr3 (415-505)||(26130340-26130430)
chr3 (412-505)||(4578053-4578145)
chr3 (420-505)||(17438976-17439061)
chr3 (451-504)||(21969354-21969407)
chr3 (451-504)||(21991790-21991843)
chr3 (412-505)||(39822867-39822960)
chr3 (450-505)||(13875271-13875324)
chr3 (409-505)||(27397880-27397976)
[»] chr4 (9 HSPs)
chr4 (411-505)||(38374368-38374462)
chr4 (415-506)||(29656369-29656460)
chr4 (408-503)||(2011946-2012041)
chr4 (440-505)||(143676-143741)
chr4 (420-504)||(19442946-19443030)
chr4 (449-505)||(51400398-51400454)
chr4 (419-505)||(7059124-7059210)
chr4 (415-505)||(25065840-25065930)
chr4 (449-506)||(2133427-2133484)
[»] chr7 (16 HSPs)
chr7 (413-505)||(31283705-31283797)
chr7 (452-505)||(21993726-21993779)
chr7 (442-505)||(7628442-7628505)
chr7 (411-505)||(28959130-28959223)
chr7 (409-505)||(19008650-19008746)
chr7 (459-511)||(23050272-23050324)
chr7 (449-505)||(39786320-39786376)
chr7 (411-474)||(37732251-37732314)
chr7 (411-497)||(662788-662874)
chr7 (451-505)||(8801320-8801374)
chr7 (420-506)||(9334458-9334544)
chr7 (451-505)||(39618502-39618556)
chr7 (415-504)||(15994836-15994925)
chr7 (469-505)||(15470586-15470622)
chr7 (411-505)||(20034706-20034797)
chr7 (449-505)||(48525711-48525767)
[»] chr5 (15 HSPs)
chr5 (411-504)||(13998974-13999067)
chr5 (411-502)||(25524390-25524481)
chr5 (463-505)||(8231463-8231505)
chr5 (412-505)||(43369889-43369980)
chr5 (415-504)||(18524624-18524713)
chr5 (409-505)||(28766047-28766141)
chr5 (412-505)||(41372589-41372680)
chr5 (436-505)||(42718544-42718613)
chr5 (463-505)||(35583431-35583473)
chr5 (463-505)||(36226304-36226346)
chr5 (427-505)||(42521821-42521898)
chr5 (420-505)||(830884-830969)
chr5 (420-505)||(35403220-35403305)
chr5 (449-505)||(28868515-28868571)
chr5 (469-505)||(40493677-40493713)
[»] scaffold0526 (1 HSPs)
scaffold0526 (450-502)||(9467-9519)
[»] scaffold0143 (1 HSPs)
scaffold0143 (419-505)||(5972-6055)
[»] scaffold0014 (1 HSPs)
scaffold0014 (409-505)||(15586-15682)
[»] scaffold0543 (1 HSPs)
scaffold0543 (449-505)||(5055-5111)
[»] scaffold0492 (1 HSPs)
scaffold0492 (449-505)||(6601-6657)
[»] scaffold0154 (1 HSPs)
scaffold0154 (449-505)||(32855-32911)
[»] scaffold0123 (1 HSPs)
scaffold0123 (421-505)||(31082-31166)


Alignment Details
Target: chr6 (Bit Score: 248; Significance: 1e-137; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 13 - 303
Target Start/End: Original strand, 22575263 - 22575553
Alignment:
Q  13 cagagacagtgttatgaaaacataatgattgcttaaaaacagtgagaactcttcaagtcatgaaaacaaaagaaataatgaggaatagagatttttcgga 112  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22575263 cagaaacaatgttatgaaaacataatgattgcttaaaaacagtgagaactcttcaagtcatgaaaacaaaagaaataatgaggaatagagatttttcgga 22575362  T
Q  113 ctatagcttcaatatggtttgcaattaactagtacaagttttagtaggtttccaaattctaattaaaacggttacattatgttattataaatatataaat 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  22575363 ctatagcttcaatatggtttgcaattaactagtacaagttttagtaggtttccaaattctaattaaaacggttacattatgttattataaataaataaat 22575462  T
Q  213 cacaaagtaacttccccccaaccataaatttcaagccgactattaatnnnnnnnnnttggtgaagaagactattaataatttatttaggct 303  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||    
T  22575463 caccaagtaacttccccccaaccataaatttcaagccgactattaataaaaaaaaattggtgaagaagactattaataatttatttaggct 22575553  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 415 - 504
Target Start/End: Original strand, 23124178 - 23124267
Alignment:
Q  415 tataatatatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaata 504  Q
    |||| ||||||||||||||  ||| | ||| |||||||||||| |||||||||||||||| |||| || |||||||||||||||||||||    
T  23124178 tatactatatataaagaaaataacatgttttggttcttttgggatgactttttctctttccaaaattacccttaattttcaatacaaata 23124267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 415 - 505
Target Start/End: Original strand, 17352864 - 17352954
Alignment:
Q  415 tataatatatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    |||| |||||||||||||| ||||  |||||   ||||||||| |||||||||||||||| |||| |  ||| |||||||||| |||||||    
T  17352864 tatactatatataaagaaaacaacccctttcacctcttttgggctgactttttctctttccaaaaatgccctcaattttcaattcaaataa 17352954  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 412 - 505
Target Start/End: Original strand, 25056303 - 25056394
Alignment:
Q  412 atctataatatatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    ||||||| |||||||||||||||| || |||||| ||||||||||| ||| ||||  |||||| |||| ||  |||||| ||| ||||||||||    
T  25056303 atctatactatatataaagaaagctacctctttcagttcttttgggctgaatttt--tctttccaaaaatactcttaatattctatacaaataa 25056394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 449 - 506
Target Start/End: Complemental strand, 9341308 - 9341251
Alignment:
Q  449 tcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataat 506  Q
    ||||||||| | ||||||||||||||||||| || ||| |||||| ||||||||||||    
T  9341308 tcttttgggataactttttctctttctaaaattaccctcaatttttaatacaaataat 9341251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 452 - 505
Target Start/End: Original strand, 11646296 - 11646349
Alignment:
Q  452 tttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    ||||||||||||||||||||||  |||| || |||||| |||||||||||||||    
T  11646296 tttgggttgactttttctcttttcaaaattacccttaaatttcaatacaaataa 11646349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 322 - 354
Target Start/End: Original strand, 22575543 - 22575575
Alignment:
Q  322 ttatttaggcttcttcaagaaaaaatttattta 354  Q
    |||||||||||||||||||||||||||||||||    
T  22575543 ttatttaggcttcttcaagaaaaaatttattta 22575575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 422 - 505
Target Start/End: Complemental strand, 2595453 - 2595371
Alignment:
Q  422 tatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    ||||||||||||  ||  |||||| ||| ||||||| ||| ||||||||||| ||||| || ||| ||||||||||||||||||    
T  2595453 tatataaagaaaataatctctttcagtt-ttttgggctgattttttctctttttaaaaataccctcaattttcaatacaaataa 2595371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 451 - 506
Target Start/End: Original strand, 13697944 - 13697999
Alignment:
Q  451 ttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataat 506  Q
    ||||||||||| ||||||||||| ||| | | |||| |||||||||||||||||||    
T  13697944 ttttgggttgattttttctctttttaataatgtcctcaattttcaatacaaataat 13697999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 505
Target Start/End: Original strand, 31192300 - 31192357
Alignment:
Q  448 ttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    |||||||||||| ||||||| |||||| |||| ||  || ||||||||||||||||||    
T  31192300 ttcttttgggttaactttttttctttcaaaaaatactctcaattttcaatacaaataa 31192357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 469 - 505
Target Start/End: Original strand, 1190376 - 1190412
Alignment:
Q  469 tctttctaaaagtatccttaattttcaatacaaataa 505  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  1190376 tctttctaaaaatatcctcaattttcaatacaaataa 1190412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 449 - 505
Target Start/End: Complemental strand, 12170205 - 12170149
Alignment:
Q  449 tcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    |||||| || ||| |||||||||||| |||| || |||||| |||||||||||||||    
T  12170205 tcttttaggctgaatttttctctttccaaaattacccttaactttcaatacaaataa 12170149  T

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Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 411 - 505
Target Start/End: Complemental strand, 925329 - 925234
Alignment:
Q  411 tatctataatatatataaagaaagcaact-tctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    |||||||| |||||||||||||| ||||| |||||| | ||||||||| ||||||||||||||||||||||||  || |||||| |||||||||||    
T  925329 tatctatactatatataaagaaaacaactctctttcagctcttttgggctgactttttctctttctaaaagtactctcaattttgaatacaaataa 925234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 413 - 505
Target Start/End: Original strand, 15874767 - 15874859
Alignment:
Q  413 tctataatatatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    |||||| ||||||||||||||  ||| |||||| |||||||| || || ||||||||||||| |||| |||||| |||||||||| |||||||    
T  15874767 tctatattatatataaagaaaataacctctttcagttcttttaggctgcctttttctctttccaaaaatatcctcaattttcaattcaaataa 15874859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 415 - 505
Target Start/End: Original strand, 12779924 - 12780013
Alignment:
Q  415 tataatatatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    |||| |||||||||||||| ||||||||||| | ||||||||| ||||||||| |||||| |||| |  ||| ||||||||||||||||||    
T  12779924 tatactatatataaagaaaacaacttctttcagctcttttgggctgacttttt-tctttccaaaattgccctcaattttcaatacaaataa 12780013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 411 - 504
Target Start/End: Complemental strand, 23773698 - 23773605
Alignment:
Q  411 tatctataatatatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaata 504  Q
    |||||||| ||||||||||||||  ||| | ||||| |||||||| | || ||||||||||||| |||| |||||| || ||||||||||||||    
T  23773698 tatctatactatatataaagaaaataacatgtttcgattcttttgagctgtctttttctctttccaaaattatcctcaaatttcaatacaaata 23773605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 410 - 506
Target Start/End: Complemental strand, 33934489 - 33934393
Alignment:
Q  410 ttatctataatatatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataat 506  Q
    |||| |||| ||||||||||||||  ||||  |||| | ||||||||| ||||||||||| ||||||||  |  |||||||||| ||||||||||||    
T  33934489 ttatttatactatatataaagaaaataactcatttcagctcttttgggctgactttttctttttctaaagatgcccttaatttttaatacaaataat 33934393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 422 - 505
Target Start/End: Complemental strand, 17580158 - 17580075
Alignment:
Q  422 tatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    ||||||||||||  ||| |||||  | |||||| ||||||||||||||||||  |||| ||  |||||||||||||||||||||    
T  17580158 tatataaagaaaataacatcttttagctcttttaggttgactttttctcttttcaaaaatactcttaattttcaatacaaataa 17580075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 447 - 504
Target Start/End: Complemental strand, 4575347 - 4575290
Alignment:
Q  447 gttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaata 504  Q
    ||||||||| ||||  ||||||||||| ||||| |||||| |||||||||||||||||    
T  4575347 gttcttttgagttggttttttctctttataaaaatatcctcaattttcaatacaaata 4575290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 412 - 505
Target Start/End: Original strand, 52043018 - 52043110
Alignment:
Q  412 atctataatatatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    ||||||| |||||| ||||||| | || |||||| |  ||||| || ||| |||||| |||||||||| || ||||||||||||||||||||||    
T  52043018 atctatactatatacaaagaaaactacctctttcagcacttttaggctgaatttttc-ctttctaaaaatacccttaattttcaatacaaataa 52043110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 459 - 511
Target Start/End: Original strand, 9306065 - 9306117
Alignment:
Q  459 tgactttttctctttctaaaagtatccttaattttcaatacaaataattcatg 511  Q
    |||||||||||||||| |||| | ||||||||||||||| |||||||| ||||    
T  9306065 tgactttttctctttccaaaaatgtccttaattttcaattcaaataatacatg 9306117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 409 - 505
Target Start/End: Original strand, 17875019 - 17875115
Alignment:
Q  409 tttatctataatatatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    |||||||||| ||||||||||||||| ||  |||||| | | ||||||||||||||||||  |||| |||| |    ||||||||||||| ||||||    
T  17875019 tttatctatactatatataaagaaagtaatatctttcagcttttttgggttgactttttcattttccaaaaattcttttaattttcaataaaaataa 17875115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 505
Target Start/End: Complemental strand, 25825238 - 25825182
Alignment:
Q  449 tcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    ||||||||| ||||||||  |||||| |||| || ||||||||||||||||||||||    
T  25825238 tcttttgggctgacttttaatctttcaaaaattacccttaattttcaatacaaataa 25825182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 415 - 507
Target Start/End: Complemental strand, 44922958 - 44922866
Alignment:
Q  415 tataatatatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataatt 507  Q
    |||| ||| |||||||||| |||  ||||||  ||||||| | ||||| ||||||||||| |||| || | | ||||||||||||||||||||    
T  44922958 tatactatgtataaagaaaacaatctctttcaattcttttagattgacattttctctttccaaaaataccttcaattttcaatacaaataatt 44922866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 505
Target Start/End: Original strand, 34747543 - 34747633
Alignment:
Q  415 tataatatatataaagaaagcaacttctttcggttcttttggg-ttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    |||| |||||||||||||| |||||  ||||   ||||||||| |||| ||||||||||| ||||| | |||||||||||||||| ||||||    
T  34747543 tatactatatataaagaaaacaactcatttcaaatcttttgggcttga-tttttctctttgtaaaaatgtccttaattttcaatagaaataa 34747633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 440 - 502
Target Start/End: Complemental strand, 31530232 - 31530170
Alignment:
Q  440 tctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaa 502  Q
    |||||||  ||||||||||||| |||||||||||| |||| | |||| | |||||||||||||    
T  31530232 tctttcgactcttttgggttgattttttctctttcaaaaaatgtcctcacttttcaatacaaa 31530170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 459 - 505
Target Start/End: Complemental strand, 43578275 - 43578229
Alignment:
Q  459 tgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    |||||||||||||||  |||| | |||||||||||||||||||||||    
T  43578275 tgactttttctcttttcaaaattgtccttaattttcaatacaaataa 43578229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 511
Target Start/End: Complemental strand, 16823921 - 16823820
Alignment:
Q  410 ttatctataatatatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataattca 509  Q
    ||||||||| ||||||||||||||  ||| ||||  | || |||||||  ||| ||||||||||  |||| || | | ||||||||||||||||||| ||    
T  16823921 ttatctatactatatataaagaaaataacctcttcagttttttttgggccgacattttctcttttcaaaaataccatcaattttcaatacaaataataca 16823822  T
Q  510 tg 511  Q
    ||    
T  16823821 tg 16823820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 506
Target Start/End: Complemental strand, 27904670 - 27904573
Alignment:
Q  410 ttatctataatatatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatcct-taattttcaatacaaataat 506  Q
    ||||||||| ||| ||||||||||  ||| |||||  | |||||| |||||||||||||| |||| |||| |  |||  |||||||||||||||||||    
T  27904670 ttatctatactatgtataaagaaaataacctcttttagctcttttaggttgactttttctttttccaaaaatgccctcaaattttcaatacaaataat 27904573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 502
Target Start/End: Complemental strand, 50944423 - 50944346
Alignment:
Q  425 ataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaa 502  Q
    ||||||||| |||| ||||||   ||||||||  |||||||||||||||| |||| |  ||| |||||||||||||||    
T  50944423 ataaagaaaacaacatctttcatctcttttggtctgactttttctctttccaaaaatgccctcaattttcaatacaaa 50944346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 409 - 505
Target Start/End: Complemental strand, 14976174 - 14976077
Alignment:
Q  409 tttatctataa-tatatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    ||||||||||| |||||||||||||| | ||||||||| | ||||||||| |||||||||||||  | |||| ||||||||||||| |||||||||||    
T  14976174 tttatctataactatatataaagaaaactacttctttcagctcttttgggctgactttttctctaccaaaaaatatccttaatttttaatacaaataa 14976077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 411 - 505
Target Start/End: Complemental strand, 20286832 - 20286739
Alignment:
Q  411 tatctataatatatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    |||||||| |||||||||||||| |||  |||||| | ||||||||||||||||||| |||||  |||| |||| | ||||||||||||||||||    
T  20286832 tatctatactatatataaagaaaacaatctctttcagctcttttgggttgacttttt-tcttttcaaaaatatcatcaattttcaatacaaataa 20286739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 411 - 505
Target Start/End: Complemental strand, 21073461 - 21073368
Alignment:
Q  411 tatctataatatatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    |||||||| |||||||||||||| |||  |||||| | ||||||||||||||||||| |||||  |||| |||| | ||||||||||||||||||    
T  21073461 tatctatactatatataaagaaaacaatctctttcagctcttttgggttgacttttt-tcttttcaaaaatatcatcaattttcaatacaaataa 21073368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 449 - 505
Target Start/End: Original strand, 16326425 - 16326481
Alignment:
Q  449 tcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    ||||||||||||||||||||| |||| |||| |||||| ||||||||||||||||||    
T  16326425 tcttttgggttgactttttctttttcaaaaaatatcctcaattttcaatacaaataa 16326481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 420 - 505
Target Start/End: Complemental strand, 19369131 - 19369045
Alignment:
Q  420 tatatataaagaaagcaacttctttcggttcttttgggttgacttt-ttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    ||||||||||||||  |||||| ||| | ||||||||||||||||| ||||||||| |||| || ||| |||||| |||||||||||    
T  19369131 tatatataaagaaaataacttcattcagctcttttgggttgactttcttctctttccaaaaataccctcaattttaaatacaaataa 19369045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 412 - 505
Target Start/End: Original strand, 29039383 - 29039475
Alignment:
Q  412 atctataatatatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    ||||||| ||| ||||||||||  ||| |||||| |||||||| || |||||||||||||||| |||| |  ||| |||||| |||||||||||    
T  29039383 atctatactatctataaagaaaataacctctttcagttcttttaggctgactttttctctttccaaaaatgccctcaatttt-aatacaaataa 29039475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 419 - 505
Target Start/End: Original strand, 33480625 - 33480708
Alignment:
Q  419 atatatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    ||||||||||||||| | || | |||| |  |||||||||||| ||||   ||||| |||| |||||||||||||||||||||||||    
T  33480625 atatatataaagaaaactacatttttcagcacttttgggttgaatttt---ctttccaaaaatatccttaattttcaatacaaataa 33480708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 505
Target Start/End: Complemental strand, 15044576 - 15044519
Alignment:
Q  448 ttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    |||||||||||||||||||||| ||||  ||| || ||| || |||||||||||||||    
T  15044576 ttcttttgggttgactttttctttttccgaaattaccctcaactttcaatacaaataa 15044519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 466
Target Start/End: Complemental strand, 33192776 - 33192723
Alignment:
Q  413 tctataatatatataaagaaagcaacttctttcggttcttttgggttgactttt 466  Q
    |||||| |||||||||||||| |||||||||||   ||||||||| ||||||||    
T  33192776 tctatattatatataaagaaaacaacttctttcaactcttttgggctgactttt 33192723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 449 - 505
Target Start/End: Complemental strand, 15919826 - 15919770
Alignment:
Q  449 tcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    ||||||||||||||||||||| |||  |||| | |||| ||||||| ||||||||||    
T  15919826 tcttttgggttgactttttcttttttcaaaaatgtcctcaattttctatacaaataa 15919770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 449 - 505
Target Start/End: Original strand, 30134286 - 30134342
Alignment:
Q  449 tcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    ||||||||||| |||||||||||||  |||| || | | ||||||||||||||||||    
T  30134286 tcttttgggttaactttttctctttgcaaaattaacttcaattttcaatacaaataa 30134342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 415 - 511
Target Start/End: Complemental strand, 30800864 - 30800768
Alignment:
Q  415 tataatatatataaagaaagcaact--tctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataattcatg 511  Q
    |||| |||||||||||||| ||||   |||||| | ||||||||||||| |||||||  ||| |||| |   || ||||||||||||||||||||||||    
T  30800864 tatattatatataaagaaaacaacacatctttcagctcttttgggttgaatttttct--ttccaaaattgctctcaattttcaatacaaataattcatg 30800768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 446 - 502
Target Start/End: Complemental strand, 45356750 - 45356694
Alignment:
Q  446 ggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaa 502  Q
    |||| |||||| ||||||||||||||||| |||| || |||||| ||| ||||||||    
T  45356750 ggtttttttggattgactttttctctttccaaaattacccttaactttaaatacaaa 45356694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 419 - 506
Target Start/End: Complemental strand, 35126257 - 35126170
Alignment:
Q  419 atatatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataat 506  Q
    ||||||||| |||||  ||||| |||| |||||||||||||||||||||||||||  |||| | |||| |||||||||||||||||||    
T  35126257 atatatatatagaaaataacttttttcagttcttttgggttgactttttctctttaaaaaaatgtcctcaattttcaatacaaataat 35126170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 412 - 505
Target Start/End: Complemental strand, 13837595 - 13837503
Alignment:
Q  412 atctataatatatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    ||||||| |||||||||| |||  |||| ||| ||  |||||||| |||||||||||||||||||||| || ||||||||||||||||||||||    
T  13837595 atctatactatatataaaaaaat-aactccttccgactcttttggattgactttttctctttctaaaaatacccttaattttcaatacaaataa 13837503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 409 - 505
Target Start/End: Complemental strand, 31593848 - 31593752
Alignment:
Q  409 tttatctataatatatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    |||||||||| |||||||||||||| ||||||||||  ||| |||| || |||||||||||||||  |||  || | ||| ||||||||||||||||    
T  31593848 tttatctatactatatataaagaaaacaacttcttttagtttttttaggctgactttttctcttttcaaacatacctttatttttcaatacaaataa 31593752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 449 - 511
Target Start/End: Original strand, 20972934 - 20972996
Alignment:
Q  449 tcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataattcatg 511  Q
    |||||||||||||||||||||||||| |||| |  ||| ||||||||||||||||||| ||||    
T  20972934 tcttttgggttgactttttctctttccaaaaatgccctcaattttcaatacaaataatacatg 20972996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 409 - 505
Target Start/End: Original strand, 5879895 - 5879989
Alignment:
Q  409 tttatctataatatatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    |||||||||| |||||||||||||| |||| |||||| | |||||| |  ||| ||||  |||||| |||| | |||||||||||||||||||||||    
T  5879895 tttatctatactatatataaagaaaacaacctctttcagctcttttagactgaatttt--tctttcaaaaaatgtccttaattttcaatacaaataa 5879989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 412 - 505
Target Start/End: Original strand, 42185020 - 42185113
Alignment:
Q  412 atctataatatatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    ||||||||||||||||||||||  ||  ||||||   | ||||||  |||||||||||||||| |||| |  ||||||||||||||||||||||    
T  42185020 atctataatatatataaagaaaataatctctttccccttttttggactgactttttctctttccaaaaatgcccttaattttcaatacaaataa 42185113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 412 - 505
Target Start/End: Original strand, 45406712 - 45406805
Alignment:
Q  412 atctataatatatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    ||||||| ||||||||||||||  ||  |||||| | ||||| || |||| |||||||||||| |||| | |||| ||||||||||||||||||    
T  45406712 atctatactatatataaagaaaataatctctttcagctctttaggattgattttttctctttccaaaaatgtcctcaattttcaatacaaataa 45406805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 411 - 505
Target Start/End: Original strand, 27597036 - 27597130
Alignment:
Q  411 tatctataatatatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    |||||||| |||||||| |||||  ||| |  ||| | |||||||||||| ||||||||||||  |||| |  ||||||||||||||||||||||    
T  27597036 tatctatactatatatatagaaaataacctacttcagctcttttgggttggctttttctcttttcaaaaatgcccttaattttcaatacaaataa 27597130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 420 - 505
Target Start/End: Complemental strand, 22882262 - 22882177
Alignment:
Q  420 tatatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    |||||||||||||| |||| |||||| | ||||||||  | || ||||||||||| |||| | |||| ||||||||||||| ||||    
T  22882262 tatatataaagaaaacaacctctttcagctcttttggacttacattttctctttcaaaaaatgtcctcaattttcaatacatataa 22882177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 448 - 505
Target Start/End: Original strand, 36080020 - 36080077
Alignment:
Q  448 ttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    ||||||||| ||||||||||||||||  |||| ||| || ||||||||||||||||||    
T  36080020 ttcttttggattgactttttctcttttaaaaaatattctcaattttcaatacaaataa 36080077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 505
Target Start/End: Complemental strand, 963535 - 963479
Alignment:
Q  449 tcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    |||||||||||||||||||||||||  |||| | ||||| ||||| |||||||||||    
T  963535 tcttttgggttgactttttctcttttcaaaaatgtccttgatttttaatacaaataa 963479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 410 - 502
Target Start/End: Original strand, 27912811 - 27912903
Alignment:
Q  410 ttatctataatatatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaa 502  Q
    ||||||||| ||||||||||||||  |  || ||| || ||||||||| ||| |||||||||||| |||| || ||| |||||| ||||||||    
T  27912811 ttatctatactatatataaagaaaatagtttgttttggctcttttgggatgattttttctctttccaaaattaccctaaatttttaatacaaa 27912903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 505
Target Start/End: Original strand, 16039095 - 16039186
Alignment:
Q  414 ctataatatatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    ||||| |||||||| |||||  ||| | ||| | |||||||||| |||||||||  |||||||||| || ||| || |||||||||||||||    
T  16039095 ctatactatatatagagaaaataacatgttttgattcttttgggctgacttttttcctttctaaaattaccctcaactttcaatacaaataa 16039186  T

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Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 424 - 506
Target Start/End: Complemental strand, 9243973 - 9243891
Alignment:
Q  424 tataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataat 506  Q
    ||||||||||  ||| | |||| |||||||||| ||||||||||||||||  |||| | || | || ||||||||||||||||    
T  9243973 tataaagaaaataacatgtttccgttcttttggattgactttttctcttttcaaaattgtcatcaactttcaatacaaataat 9243891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 419 - 505
Target Start/End: Original strand, 10552702 - 10552787
Alignment:
Q  419 atatatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    ||||||||||||||| |||  |||||| | ||||||||| ||| ||||||||||||||||| | ||   ||||||||||| ||||||    
T  10552702 atatatataaagaaaacaaactctttcagctcttttgggctga-tttttctctttctaaaaatgtcaccaattttcaatataaataa 10552787  T

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Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 422 - 504
Target Start/End: Complemental strand, 24004888 - 24004806
Alignment:
Q  422 tatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaata 504  Q
    |||||||||||| ||||   |||| ||  ||||||| |||||||||||||||  |||| || ||| |||||||||||||||||    
T  24004888 tatataaagaaaacaacccttttcagtctttttgggctgactttttctcttttcaaaaataccctcaattttcaatacaaata 24004806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 411 - 505
Target Start/End: Complemental strand, 33677051 - 33676958
Alignment:
Q  411 tatctataatatatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    |||||||| |||||||||||||| ||||| ||||  | ||||||| | | ||||||||| |||| |||| |  ||| ||||||||||||||||||    
T  33677051 tatctatactatatataaagaaaacaactcctttaagctcttttgagcttactttttct-tttcaaaaaatgccctcaattttcaatacaaataa 33676958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 451 - 505
Target Start/End: Complemental strand, 39271911 - 39271857
Alignment:
Q  451 ttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    ||||||||||| |||||||||||| |||| ||  || ||||||||||||||||||    
T  39271911 ttttgggttgaatttttctctttccaaaaatactctcaattttcaatacaaataa 39271857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 414 - 468
Target Start/End: Complemental strand, 42651457 - 42651403
Alignment:
Q  414 ctataatatatataaagaaagcaacttctttcggttcttttgggttgactttttc 468  Q
    ||||| |||||||||||||| ||||||||||| | ||||||||  ||||||||||    
T  42651457 ctatactatatataaagaaaacaacttctttcagctcttttggaatgactttttc 42651403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 439 - 489
Target Start/End: Original strand, 42949691 - 42949741
Alignment:
Q  439 ttctttcggttcttttgggttgactttttctctttctaaaagtatccttaa 489  Q
    ||||||||| ||||||| |||||||||||||||||  |||| |||||||||    
T  42949691 ttctttcggctcttttgagttgactttttctcttttcaaaaatatccttaa 42949741  T

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Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 449 - 505
Target Start/End: Original strand, 34063066 - 34063122
Alignment:
Q  449 tcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    ||||||||||||| ||||||||||| ||||| || |||||| ||||||  |||||||    
T  34063066 tcttttgggttgattttttctctttataaaactacccttaactttcaacccaaataa 34063122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 449 - 505
Target Start/End: Original strand, 43798944 - 43799000
Alignment:
Q  449 tcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    |||||||||||||||||||| |||||||||| |   || ||||||||||| ||||||    
T  43798944 tcttttgggttgactttttccctttctaaaaatgctctcaattttcaatataaataa 43799000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 410 - 505
Target Start/End: Original strand, 611415 - 611510
Alignment:
Q  410 ttatctataatatatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    ||||||||| |||||||||||||| |||| |||||| | |||||||||  ||||||||||||||  |||| |  ||| ||||||||||||||||||    
T  611415 ttatctatactatatataaagaaaacaacatctttcagctcttttgggccgactttttctcttttcaaaaatgccctcaattttcaatacaaataa 611510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 411 - 505
Target Start/End: Original strand, 45885650 - 45885744
Alignment:
Q  411 tatctataatatatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    |||||||| ||||||||||||||  ||| ||||||   |||||||||||||||||||||||||| |||| | || | |||| |||||||||||||    
T  45885650 tatctatattatatataaagaaaataacatctttcaactcttttgggttgactttttctctttcaaaaaatgtcttcaattctcaatacaaataa 45885744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 409 - 505
Target Start/End: Complemental strand, 42392243 - 42392147
Alignment:
Q  409 tttatctataatatatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    |||||||||| ||||||||||||||  |||| |||||   | |||||||||||||||||||||||  |||| | | || ||||||||||||||||||    
T  42392243 tttatctatagtatatataaagaaaataactcctttcaacttttttgggttgactttttctcttttaaaaaatgttctcaattttcaatacaaataa 42392147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 449 - 503
Target Start/End: Original strand, 50650630 - 50650684
Alignment:
Q  449 tcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaat 503  Q
    ||||||| |||||||||||| |||||||||| || ||||||||||||||||||||    
T  50650630 tcttttgagttgactttttccctttctaaaaatacccttaattttcaatacaaat 50650684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 420 - 504
Target Start/End: Complemental strand, 38809652 - 38809568
Alignment:
Q  420 tatatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaata 504  Q
    |||||||||||||| |||   ||||| ||||| ||||||||||||||| ||||||||||  || ||| || ||||||||||||||    
T  38809652 tatatataaagaaaacaatcactttcagttctcttgggttgactttttatctttctaaagttaccctcaactttcaatacaaata 38809568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 449 - 505
Target Start/End: Complemental strand, 49758692 - 49758636
Alignment:
Q  449 tcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    ||||||||||||||||||||| ||||||||| |||||| || |||||| ||||||||    
T  49758692 tcttttgggttgactttttctgtttctaaaattatcctcaactttcaaaacaaataa 49758636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 451 - 505
Target Start/End: Original strand, 17589942 - 17589995
Alignment:
Q  451 ttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    |||||| ||||||||||| |||||||||| || ||||||||||||||||||||||    
T  17589942 ttttggattgactttttc-ctttctaaaaatacccttaattttcaatacaaataa 17589995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 415 - 505
Target Start/End: Original strand, 18956711 - 18956801
Alignment:
Q  415 tataatatatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    |||| ||||||||||||||  ||| |||||| | |||||||||||||| |||||| |||| |||| |  | | ||||||||||||||||||    
T  18956711 tatactatatataaagaaaataacctctttcagctcttttgggttgaccttttctatttccaaaaatgccatcaattttcaatacaaataa 18956801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 412 - 505
Target Start/End: Original strand, 24487571 - 24487664
Alignment:
Q  412 atctataatatatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    ||||||| |||||||||||||| |||||  |||  | |||||| ||  ||||||||||||||  |||| | |||| ||||||||||||||||||    
T  24487571 atctatactatatataaagaaaacaactcatttaagctcttttaggccgactttttctcttttaaaaaatgtcctcaattttcaatacaaataa 24487664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 505
Target Start/End: Complemental strand, 29626112 - 29626056
Alignment:
Q  449 tcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    ||||||||| |||||||||||||||| |||| |||| | || |||||||||||||||    
T  29626112 tcttttgggctgactttttctctttccaaaattatcttcaactttcaatacaaataa 29626056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 413 - 505
Target Start/End: Complemental strand, 45702373 - 45702282
Alignment:
Q  413 tctataatatatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    |||||| ||||||||||||||  ||| | |||| ||||||||  |  |||||||||||||| ||||| |||||| |||||| |||||||||||    
T  45702373 tctatactatatataaagaaaataacat-tttcagttcttttcagcagactttttctctttttaaaaatatcctcaattttaaatacaaataa 45702282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 415 - 505
Target Start/End: Original strand, 26130340 - 26130430
Alignment:
Q  415 tataatatatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    |||| |||||| ||||||| ||||  ||||| |  |||||| |||||||||||||||||| |||| |  | | ||||||||||||||||||    
T  26130340 tatactatatacaaagaaaacaacccctttcagcacttttgtgttgactttttctctttccaaaaatgccatcaattttcaatacaaataa 26130430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 505
Target Start/End: Complemental strand, 4578145 - 4578053
Alignment:
Q  412 atctataatatatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    ||||||| |||||||||||||| |||   |||||   ||||||||| |||||||| ||||||| |||| || ||| ||||||||||| ||||||    
T  4578145 atctatactatatataaagaaaacaatcactttcatctcttttgggctgactttt-ctctttccaaaaataccctcaattttcaatataaataa 4578053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 505
Target Start/End: Complemental strand, 17439061 - 17438976
Alignment:
Q  420 tatatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    ||||||||||||||  ||| |||||  | ||||||||| || ||||  ||||||| |||| || ||| ||||||||||||||||||    
T  17439061 tatatataaagaaaataacctcttttagctcttttgggctggctttacctctttccaaaattaccctcaattttcaatacaaataa 17438976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 504
Target Start/End: Original strand, 21969354 - 21969407
Alignment:
Q  451 ttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaata 504  Q
    ||||||||||||||||  ||||||||||| || ||| || ||||||||||||||    
T  21969354 ttttgggttgacttttcatctttctaaaattaccctcaactttcaatacaaata 21969407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 504
Target Start/End: Original strand, 21991790 - 21991843
Alignment:
Q  451 ttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaata 504  Q
    ||||||||||||||||  ||||||||||| || ||| || ||||||||||||||    
T  21991790 ttttgggttgacttttcatctttctaaaattaccctcaactttcaatacaaata 21991843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 505
Target Start/End: Complemental strand, 39822960 - 39822867
Alignment:
Q  412 atctataatatatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    ||||||| ||||||||||||||  || ||||||  | ||||||||||||| ||||| |||||   ||| || ||| |||||| |||||||||||    
T  39822960 atctatactatatataaagaaaataatttctttgagctcttttgggttgattttttttcttttcgaaaataccctcaattttgaatacaaataa 39822867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 450 - 505
Target Start/End: Original strand, 13875271 - 13875324
Alignment:
Q  450 cttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    |||||||||||| |||||||  ||| |||| |||||| ||||||||||||||||||    
T  13875271 cttttgggttgaatttttct--ttccaaaaatatcctcaattttcaatacaaataa 13875324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 409 - 505
Target Start/End: Original strand, 27397880 - 27397976
Alignment:
Q  409 tttatctataatatatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    ||||| |||| ||||||||||||||  ||| | ||| || | ||||||||||| | |||||||||| || | || ||| || |||||||||||||||    
T  27397880 tttatttatactatatataaagaaaataacatgttttggcttttttgggttgattatttctctttccaatattaccctaaactttcaatacaaataa 27397976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 411 - 505
Target Start/End: Original strand, 38374368 - 38374462
Alignment:
Q  411 tatctataatatatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    |||||||| |||||||||||||| |||  | |||| ||  ||||||| ||||||||||||||||||||| |   |||||||||||||||||||||    
T  38374368 tatctatactatatataaagaaaacaatatttttcagtatttttgggctgactttttctctttctaaaaatgctcttaattttcaatacaaataa 38374462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 415 - 506
Target Start/End: Original strand, 29656369 - 29656460
Alignment:
Q  415 tataatatatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataat 506  Q
    |||| ||||||||||||||  ||| |||||| | ||||||||| |||||||||||||||| |||| |  ||| ||||||||||| |||||||    
T  29656369 tatactatatataaagaaaataacctctttcagctcttttgggctgactttttctctttccaaaactgccctcaattttcaataaaaataat 29656460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 408 - 503
Target Start/End: Complemental strand, 2012041 - 2011946
Alignment:
Q  408 ctttatctataatatatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaat 503  Q
    ||||||||||| |||||| |||||||  ||| | ||| |  |||||||| |||||||||||||||| ||||| || ||| || |||||||||||||    
T  2012041 ctttatctatactatatacaaagaaaataacatgttttgcctcttttggattgactttttctctttttaaaattaccctcaactttcaatacaaat 2011946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 440 - 505
Target Start/End: Complemental strand, 143741 - 143676
Alignment:
Q  440 tctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    |||||| | |||||||||||||||||||||||||  |||| || ||| ||||||||||| ||||||    
T  143741 tctttcagctcttttgggttgactttttctcttttcaaaaataccctcaattttcaatataaataa 143676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 420 - 504
Target Start/End: Complemental strand, 19443030 - 19442946
Alignment:
Q  420 tatatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaata 504  Q
    |||||||||||||| || | ||||||   ||| ||||| |||||||||||||||| |||| | || | |||||||||||||||||    
T  19443030 tatatataaagaaaacatcatctttcaactctcttgggctgactttttctctttccaaaaatgtcatcaattttcaatacaaata 19442946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 505
Target Start/End: Complemental strand, 51400454 - 51400398
Alignment:
Q  449 tcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    |||||||||||||||||||||||||| |||| |   ||||||| |||||||||||||    
T  51400454 tcttttgggttgactttttctctttccaaaaatgatcttaattctcaatacaaataa 51400398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 419 - 505
Target Start/End: Original strand, 7059124 - 7059210
Alignment:
Q  419 atatatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    |||||||||||||||  ||  |||||| | ||||||| | |||||||| ||||||| |||| | || | ||||||||||||||||||    
T  7059124 atatatataaagaaaataatctctttcagctcttttgagctgacttttcctctttccaaaaatgtcttcaattttcaatacaaataa 7059210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 415 - 505
Target Start/End: Complemental strand, 25065930 - 25065840
Alignment:
Q  415 tataatatatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    |||| ||||||||||||||  || ||||||| | ||||||||  ||||||||||||||||  ||| ||||||  | |||||||| ||||||    
T  25065930 tatattatatataaagaaaataatttctttcagctcttttggactgactttttctctttccgaaaatatcctctaatttcaatataaataa 25065840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 506
Target Start/End: Original strand, 2133427 - 2133484
Alignment:
Q  449 tcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataat 506  Q
    ||||||||||||| ||||| ||||| ||||| || ||| || ||||||||||||||||    
T  2133427 tcttttgggttgattttttttctttttaaaattaccctcaactttcaatacaaataat 2133484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 413 - 505
Target Start/End: Complemental strand, 31283797 - 31283705
Alignment:
Q  413 tctataatatatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    |||||| ||||||||||||||| ||||  |||  | |||||||||||||||||||||||||| |||| |  ||| ||||||| ||||||||||    
T  31283797 tctatactatatataaagaaagtaactcatttaagctcttttgggttgactttttctctttccaaaaatgccctcaattttcgatacaaataa 31283705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 452 - 505
Target Start/End: Complemental strand, 21993779 - 21993726
Alignment:
Q  452 tttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    |||||| ||||||||||||||||||||| || ||| ||||||||||||||||||    
T  21993779 tttgggctgactttttctctttctaaaaataccctcaattttcaatacaaataa 21993726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 442 - 505
Target Start/End: Original strand, 7628442 - 7628505
Alignment:
Q  442 tttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    |||| |||||||||| |||||||||||||||| ||||| | || | ||||||||||||||||||    
T  7628442 tttcagttcttttggattgactttttctctttttaaaaatgtcttcaattttcaatacaaataa 7628505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 411 - 505
Target Start/End: Complemental strand, 28959223 - 28959130
Alignment:
Q  411 tatctataatatatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    |||||||| |||||||||||||| |||| |||||||  |||||| |||||||||||||| |||  |||| |  | |||||||| |||||||||||    
T  28959223 tatctatactatatataaagaaaacaac-tctttcgactcttttaggttgactttttcttttttcaaaaatgcctttaatttttaatacaaataa 28959130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 409 - 505
Target Start/End: Complemental strand, 19008746 - 19008650
Alignment:
Q  409 tttatctataatatatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    |||||||||| ||||||||||||||  ||| | ||| |||| ||||||| ||||||||| |||||  |||| || | | || |||||||||||||||    
T  19008746 tttatctatactatatataaagaaaataacatgttttggtttttttgggctgactttttatcttttcaaaattaccataaactttcaatacaaataa 19008650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 459 - 511
Target Start/End: Original strand, 23050272 - 23050324
Alignment:
Q  459 tgactttttctctttctaaaagtatccttaattttcaatacaaataattcatg 511  Q
    |||||||||||||||| |||| |||||| |||||| |||||||||||| ||||    
T  23050272 tgactttttctctttccaaaaatatcctcaattttaaatacaaataatacatg 23050324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 505
Target Start/End: Original strand, 39786320 - 39786376
Alignment:
Q  449 tcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    ||||||||| |||||||||||||||| |||| || ||| || |||||||||||||||    
T  39786320 tcttttgggctgactttttctctttccaaaactaccctcaactttcaatacaaataa 39786376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 474
Target Start/End: Complemental strand, 37732314 - 37732251
Alignment:
Q  411 tatctataatatatataaagaaagcaacttctttcggttcttttgggttgactttttctctttc 474  Q
    |||||||| |||| ||||||||| |||| |||||| |||||||| || ||| ||||||||||||    
T  37732314 tatctatactatacataaagaaaacaacatctttcagttctttttggctgaatttttctctttc 37732251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 411 - 497
Target Start/End: Original strand, 662788 - 662874
Alignment:
Q  411 tatctataatatatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaat 497  Q
    |||||||| || |||||||||||  | | ||||| |  ||||||| ||||||||||||||||||||||| |||| | || |||||||    
T  662788 tatctatactaaatataaagaaaatagcatcttttgcctcttttgagttgactttttctctttctaaaattatcttcaactttcaat 662874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 451 - 505
Target Start/End: Original strand, 8801320 - 8801374
Alignment:
Q  451 ttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    ||||||| || | |||||||||||||||| | || ||||||||||||||||||||    
T  8801320 ttttgggctgtccttttctctttctaaaaatgtcattaattttcaatacaaataa 8801374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 420 - 506
Target Start/End: Original strand, 9334458 - 9334544
Alignment:
Q  420 tatatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataat 506  Q
    ||||||||||||||  ||| | ||| |  ||||||||| |||| ||||||||||  |||| || ||| |||||||||||||||||||    
T  9334458 tatatataaagaaaataacatgttttgactcttttgggctgacattttctcttttcaaaattaccctcaattttcaatacaaataat 9334544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 451 - 505
Target Start/End: Original strand, 39618502 - 39618556
Alignment:
Q  451 ttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    ||||||| |||||||||||| ||| |||| | |||| ||||||||||||||||||    
T  39618502 ttttgggctgactttttctcattccaaaaatgtcctcaattttcaatacaaataa 39618556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 504
Target Start/End: Complemental strand, 15994925 - 15994836
Alignment:
Q  415 tataatatatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaata 504  Q
    |||| ||||||||||||||  ||| |||||  | |||||||||||||| |||||||||||| ||| ||  || || ||| ||||||||||    
T  15994925 tatactatatataaagaaaataacatcttttagctcttttgggttgacattttctctttctcaaattactctcaactttaaatacaaata 15994836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 469 - 505
Target Start/End: Original strand, 15470586 - 15470622
Alignment:
Q  469 tctttctaaaagtatccttaattttcaatacaaataa 505  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  15470586 tctttctaaaaatatcctcaattttcaatacaaataa 15470622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 411 - 505
Target Start/End: Original strand, 20034706 - 20034797
Alignment:
Q  411 tatctataatatatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    |||||||| |||||||||||||| | || |||||| | ||||||||||||  |||   |||||| |||| |  ||| ||||||||||||||||||    
T  20034706 tatctatactatatataaagaaaactacctctttcagctcttttgggttggattt---tctttccaaaaattccctcaattttcaatacaaataa 20034797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 449 - 505
Target Start/End: Original strand, 48525711 - 48525767
Alignment:
Q  449 tcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    ||||||| | ||||||||||| |||| |||| || ||| ||||||||||||||||||    
T  48525711 tcttttgagctgactttttctttttccaaaaataccctcaattttcaatacaaataa 48525767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 411 - 504
Target Start/End: Original strand, 13998974 - 13999067
Alignment:
Q  411 tatctataatatatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaata 504  Q
    |||||||| |||||||| |||||  ||| ||||||   ||||||||  |||||||||||||||| ||||||  ||| |||||||||||||||||    
T  13998974 tatctatactatatatagagaaaataacctctttcaactcttttggactgactttttctctttccaaaagtgccctcaattttcaatacaaata 13999067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 411 - 502
Target Start/End: Original strand, 25524390 - 25524481
Alignment:
Q  411 tatctataatatatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaa 502  Q
    |||||||| |||||||| | ||| |||||  |||| | |||||||||||||||||||| ||||  |||| || ||| |||||||||||||||    
T  25524390 tatctatattatatatataaaaaacaactcatttcagctcttttgggttgactttttcacttttcaaaaataccctcaattttcaatacaaa 25524481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 463 - 505
Target Start/End: Complemental strand, 8231505 - 8231463
Alignment:
Q  463 tttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    ||||||||||||||||| |||||||||||||| ||||||||||    
T  8231505 tttttctctttctaaaattatccttaattttctatacaaataa 8231463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 412 - 505
Target Start/End: Original strand, 43369889 - 43369980
Alignment:
Q  412 atctataatatatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    ||||||| |||||||||||||| | |||||||||    |||||||| ||| |||||||  |||||||| || ||| ||||||||||||||||||    
T  43369889 atctatactatatataaagaaaactacttctttcaacacttttgggatgaatttttct--ttctaaaaataccctcaattttcaatacaaataa 43369980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 415 - 504
Target Start/End: Original strand, 18524624 - 18524713
Alignment:
Q  415 tataatatatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaata 504  Q
    |||| ||||||||||||||  ||| |||||| | | ||||| | |||||||||||||||  |||| |||| | |||||||||||||||||    
T  18524624 tatactatatataaagaaaataacctctttcagctattttgtgctgactttttctcttttcaaaaatatcatcaattttcaatacaaata 18524713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 409 - 505
Target Start/End: Original strand, 28766047 - 28766141
Alignment:
Q  409 tttatctataatatatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    |||||||||| ||||| |||||||| | |||||||||    |||||||||||| |||||||  ||| |||| || |||||||||| |||||||||||    
T  28766047 tttatctatactatatgtaaagaaaactacttctttcaacacttttgggttgaatttttct--ttccaaaaatacccttaatttttaatacaaataa 28766141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 412 - 505
Target Start/End: Complemental strand, 41372680 - 41372589
Alignment:
Q  412 atctataatatatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    |||||||||||||||||||||| ||| | ||||| | ||||||||| ||| ||||||| || | |||| |||||| ||||||||||| ||||||    
T  41372680 atctataatatatataaagaaaacaa-tcctttcagctcttttgggctgattttttct-ttccaaaaaatatcctcaattttcaatataaataa 41372589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 436 - 505
Target Start/End: Original strand, 42718544 - 42718613
Alignment:
Q  436 aacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    |||| ||||||| | ||||||| ||||||||||| |||  |||| |||||| ||||||||||||||||||    
T  42718544 aactactttcggcttttttgggatgactttttctttttaaaaaaatatcctcaattttcaatacaaataa 42718613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 463 - 505
Target Start/End: Complemental strand, 35583473 - 35583431
Alignment:
Q  463 tttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    ||||||||||||||||| || | ||||||||||||||||||||    
T  35583473 tttttctctttctaaaattaccattaattttcaatacaaataa 35583431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 463 - 505
Target Start/End: Original strand, 36226304 - 36226346
Alignment:
Q  463 tttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    |||||||||||| |||| |||||| ||||||||||||||||||    
T  36226304 tttttctctttccaaaaatatcctcaattttcaatacaaataa 36226346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 427 - 505
Target Start/End: Original strand, 42521821 - 42521898
Alignment:
Q  427 aaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    |||||||  ||| |||||||| |||||||||||| |||||||| |||  |||| |||||| |||||| |||||||||||    
T  42521821 aaagaaaataacctctttcggctcttttgggttgcctttttct-ttttaaaaaatatcctcaattttgaatacaaataa 42521898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 505
Target Start/End: Original strand, 830884 - 830969
Alignment:
Q  420 tatatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    ||||||||||||||  ||||  |||| | ||||||||  |||||||||| |||||  ||| || | ||||||||||||||||||||    
T  830884 tatatataaagaaaataactcatttcagctcttttggactgactttttcactttcccaaaataccattaattttcaatacaaataa 830969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 505
Target Start/End: Complemental strand, 35403305 - 35403220
Alignment:
Q  420 tatatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    ||||||||||||||  ||  ||||||  |||||||| ||||| ||||||| ||| ||||| | || | ||||||||||||||||||    
T  35403305 tatatataaagaaaataatctctttctattcttttgagttgattttttctttttttaaaaatgtcatcaattttcaatacaaataa 35403220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 449 - 505
Target Start/End: Complemental strand, 28868571 - 28868515
Alignment:
Q  449 tcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    |||||||| |||||||||||||||| ||||| | || | ||||||||||| ||||||    
T  28868571 tcttttggattgactttttctctttttaaaaatgtcatcaattttcaatataaataa 28868515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 469 - 505
Target Start/End: Original strand, 40493677 - 40493713
Alignment:
Q  469 tctttctaaaagtatccttaattttcaatacaaataa 505  Q
    |||||| |||| |||||||||||||||||||||||||    
T  40493677 tctttcaaaaaatatccttaattttcaatacaaataa 40493713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0526 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0526
Description:

Target: scaffold0526; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 450 - 502
Target Start/End: Complemental strand, 9519 - 9467
Alignment:
Q  450 cttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaa 502  Q
    ||||| |||||||||||||||||||||||| ||  ||||| ||||||||||||    
T  9519 ctttttggttgactttttctctttctaaaattactcttaactttcaatacaaa 9467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0143 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0143
Description:

Target: scaffold0143; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 419 - 505
Target Start/End: Complemental strand, 6055 - 5972
Alignment:
Q  419 atatatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    ||||||||||||||| | || | |||| |  |||||||||||| ||||   ||||| |||| |||||||||||||||||||||||||    
T  6055 atatatataaagaaaactacatttttcagcacttttgggttgaatttt---ctttccaaaaatatccttaattttcaatacaaataa 5972  T

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Target: scaffold0014 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 409 - 505
Target Start/End: Original strand, 15586 - 15682
Alignment:
Q  409 tttatctataatatatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    ||||| |||| ||||||||||||||  ||| | ||| |  |||||| | |||||||||||||||||||||  |||||| || |||||||||| ||||    
T  15586 tttatatatactatatataaagaaaataacatgttttgactctttttgattgactttttctctttctaaagttatcctcaactttcaatacatataa 15682  T

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Target: scaffold0543 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0543
Description:

Target: scaffold0543; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 449 - 505
Target Start/End: Original strand, 5055 - 5111
Alignment:
Q  449 tcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    ||||||||| |||||||||||||||  |||| ||  || ||||||||||||||||||    
T  5055 tcttttgggatgactttttctcttttcaaaaatactctcaattttcaatacaaataa 5111  T

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Target: scaffold0492 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0492
Description:

Target: scaffold0492; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 449 - 505
Target Start/End: Original strand, 6601 - 6657
Alignment:
Q  449 tcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    ||||||||| |||||||||||||||  |||| ||  || ||||||||||||||||||    
T  6601 tcttttgggatgactttttctcttttcaaaaatactctcaattttcaatacaaataa 6657  T

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Target: scaffold0154 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 449 - 505
Target Start/End: Complemental strand, 32911 - 32855
Alignment:
Q  449 tcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    ||||||||||||| |||| |||||||||||| || | | || |||||||||||||||    
T  32911 tcttttgggttgatttttactctttctaaaattaccatcaactttcaatacaaataa 32855  T

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Target: scaffold0123 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 421 - 505
Target Start/End: Complemental strand, 31166 - 31082
Alignment:
Q  421 atatataaagaaagcaacttctttcggttcttttgggttgactttttctctttctaaaagtatccttaattttcaatacaaataa 505  Q
    |||||||||||||  ||| || ||| | | ||||||  |||||||||||||||| |||| |  |||||||||||| |||||||||    
T  31166 atatataaagaaaataacctccttcagcttttttggcctgactttttctctttccaaaaattcccttaattttcattacaaataa 31082  T

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