View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3546_low_14 (Length: 464)

Name: NF3546_low_14
Description: NF3546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3546_low_14
NF3546_low_14
[»] chr2 (5 HSPs)
chr2 (17-459)||(14735351-14735796)
chr2 (20-122)||(14742181-14742283)
chr2 (366-417)||(17303234-17303285)
chr2 (52-116)||(14997273-14997337)
chr2 (366-417)||(5887909-5887960)
[»] chr7 (6 HSPs)
chr7 (120-417)||(44629261-44629550)
chr7 (388-462)||(47520480-47520555)
chr7 (168-312)||(26074991-26075141)
chr7 (168-312)||(26098778-26098928)
chr7 (310-416)||(8061304-8061412)
chr7 (186-297)||(44598584-44598696)
[»] chr3 (3 HSPs)
chr3 (120-462)||(4221063-4221403)
chr3 (120-159)||(145493-145532)
chr3 (168-297)||(29438422-29438550)
[»] chr1 (3 HSPs)
chr1 (128-462)||(23825919-23826242)
chr1 (220-312)||(10370929-10371022)
chr1 (120-159)||(14876805-14876844)
[»] chr6 (2 HSPs)
chr6 (135-293)||(32786643-32786794)
chr6 (168-252)||(14533700-14533784)
[»] chr5 (5 HSPs)
chr5 (120-258)||(32633011-32633143)
chr5 (30-116)||(29465200-29465286)
chr5 (366-454)||(15974128-15974217)
chr5 (120-164)||(16717199-16717243)
chr5 (120-164)||(19645452-19645496)
[»] chr4 (8 HSPs)
chr4 (182-312)||(46851937-46852068)
chr4 (120-159)||(50070187-50070226)
chr4 (366-409)||(52797844-52797887)
chr4 (121-159)||(33226285-33226323)
chr4 (168-209)||(2930410-2930451)
chr4 (380-417)||(46852133-46852170)
chr4 (366-445)||(26494424-26494504)
chr4 (168-232)||(52490263-52490327)
[»] scaffold0325 (1 HSPs)
scaffold0325 (121-159)||(19783-19821)
[»] chr8 (2 HSPs)
chr8 (120-257)||(24888009-24888140)
chr8 (379-462)||(27084455-27084539)
[»] scaffold0060 (1 HSPs)
scaffold0060 (124-160)||(35934-35970)


Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 17 - 459
Target Start/End: Original strand, 14735351 - 14735796
Alignment:
Q  17 catgttgcagcggcttcttagatgcagtatgagtattctcccttcctttgtttttgcaatcattcttttgatcatcagtggattggtaaaactgttcaac 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14735351 catgttgcagcggcttcttagatgcagtatgagtattctcccttcctttgtttttgcaatcattcttttgatcatcagtggattggtaaaactgttcaac 14735450  T
Q  117 ctctttgttgggggtgctaaacttctatgaaatatatattaaacggtaacagtttcaagaagtaacaataattaataactggcctagtgatataaattgc 216  Q
    |||||| || ||| |||||||||| |||| ||||||||||||| || ||| |||||||||| ||||||||||||||||||| |||||||||||||||||     
T  14735451 ctctttattaggg-tgctaaacttttatggaatatatattaaaaggaaacggtttcaagaaataacaataattaataactgacctagtgatataaattgt 14735549  T
Q  217 tttaaaggagcaagaagatgtggattggaatccccttaaaaaggttgtttt---taataaaatatgtaaaagtagaagattaaaaatgtaataagaagaa 313  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||| ||||   |||||||||||||||||||||||||||||| |||||||||||||||    
T  14735550 tttaaaggagcaagaagatgtggattcgaatccccttaaaaacgtttttttttttaataaaatatgtaaaagtagaagattaaatatgtaataagaagaa 14735649  T
Q  314 gatgtgtaagtgttgaaccaacaacctttaacaacttacagtactccattttcactacaacaaccaaattctaattgatataatacacctaatatagtat 413  Q
    |||||||||||||||||||||||||||||||||| ||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  14735650 gatgtgtaagtgttgaaccaacaacctttaacaatttacagtaccccatttccacaacaacaaccaaattctaattgatataatacacctaatatagtat 14735749  T
Q  414 ataacaaaaatttgggg-atgtcatggcccctgtctgtccctaaaga 459  Q
    |||| |||||| ||||| ||| |||||||||||||||  ||||||||    
T  14735750 ataagaaaaatctggggaatgccatggcccctgtctgatcctaaaga 14735796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 20 - 122
Target Start/End: Original strand, 14742181 - 14742283
Alignment:
Q  20 gttgcagcggcttcttagatgcagtatgagtattctcccttcctttgtttttgcaatcattcttttgatcatcagtggattggtaaaactgttcaacctc 119  Q
    |||||||||||||||||||| ||||  ||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  14742181 gttgcagcggcttcttagatccagtcggagcattctccctgcctttgtttctgcaatcattcttttgatcatcagtggattggtaaaactgttcaacctc 14742280  T
Q  120 ttt 122  Q
    |||    
T  14742281 ttt 14742283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 366 - 417
Target Start/End: Original strand, 17303234 - 17303285
Alignment:
Q  366 cactacaacaaccaaattctaattgatataatacacctaatatagtatataa 417  Q
    ||||||||||||| |||| | |||||||| ||||||||||||||||||||||    
T  17303234 cactacaacaaccgaattgttattgatattatacacctaatatagtatataa 17303285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 116
Target Start/End: Complemental strand, 14997337 - 14997273
Alignment:
Q  52 ttctcccttcctttgtttttgcaatcattcttttgatcatcagtggattggtaaaactgttcaac 116  Q
    |||||| | ||||||  |||||||||||||| |||| |||||||||||| ||||||||| |||||    
T  14997337 ttctccttgcctttgagtttgcaatcattctgttgaacatcagtggatttgtaaaactgctcaac 14997273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 417
Target Start/End: Complemental strand, 5887960 - 5887909
Alignment:
Q  366 cactacaacaaccaaattctaattgatataatacacctaatatagtatataa 417  Q
    |||| ||||||||||||| | |||||||| ||||||||||| ||||||||||    
T  5887960 cactgcaacaaccaaattattattgatattatacacctaatgtagtatataa 5887909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 102; Significance: 2e-50; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 120 - 417
Target Start/End: Complemental strand, 44629550 - 44629261
Alignment:
Q  120 tttgttgggggtgctaaacttctatgaaatatatattaaacggtaacagtttcaagaagtaacaataattaataactggcctagtgatataaattgcttt 219  Q
    ||||| |||||||| ||||||||||| |||||||||||||||||      |||||||||  |||||||||| |||||| ||||||| ||||||||| ||     
T  44629550 tttgtagggggtgccaaacttctatggaatatatattaaacggt------ttcaagaagatacaataattagtaactgacctagtggtataaattgtttg 44629457  T
Q  220 aaaggagcaagaagatgtggattggaatccccttaaaaaggttgtttttaataaaatatgtaaaagtagaagattaaaaatgtaataagaagaagatgtg 319  Q
    ||| || ||||| ||||||| || ||||||||| ||||| ||| ||||||||| |||||||||||||||||||||||| |||||| |||||||   ||||    
T  44629456 aaaagaacaagaggatgtgggtttgaatcccctcaaaaacgttttttttaatacaatatgtaaaagtagaagattaaatatgtaaaaagaaga---tgtg 44629360  T
Q  320 taagtgttgaaccaacaacctttaacaacttacagtactccattttc-actacaacaaccaaattctaattgatataatacacctaatatagtatataa 417  Q
     ||||||| ||||  | |||||||  || |||||| || ||  |||| ||| ||||| || || | |||||||||||||||||||||||||||||||||    
T  44629359 gaagtgtttaaccggcgacctttagtaaattacagcacccccctttccactgcaacagccgaaatttaattgatataatacacctaatatagtatataa 44629261  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 388 - 462
Target Start/End: Original strand, 47520480 - 47520555
Alignment:
Q  388 ttgatataatacacctaatatagtatataac-aaaaatttggggatgtcatggcccctgtctgtccctaaagagat 462  Q
    ||||||||||||| ||||||||||||||||| |||| || ||||||||||||||||| | |||||||| |||||||    
T  47520480 ttgatataatacatctaatatagtatataacgaaaacttgggggatgtcatggccccagcctgtccctgaagagat 47520555  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 168 - 312
Target Start/End: Original strand, 26074991 - 26075141
Alignment:
Q  168 gtttcaagaagtaacaataattaataactggcctagtgatataaattgctttaaaggagcaagaagatgtggattggaatccccttaaaaagg-----tt 262  Q
    ||||||||||||| |||||||| ||||| ||||||||| |||||||   ||||||||||||||| | ||||| || ||||| | | ||||| |     ||    
T  26074991 gtttcaagaagtatcaataatttataaccggcctagtggtataaatccttttaaaggagcaagagggtgtgggtttgaatcacttcaaaaatgttttttt 26075090  T
Q  263 gtttttaata-aaatatgtaaaagtagaagattaaaaatgtaataagaaga 312  Q
     ||||||||| |||||| |||  |||||||||| || ||||||||||||||    
T  26075091 ttttttaatacaaatatataatcgtagaagattgaatatgtaataagaaga 26075141  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 168 - 312
Target Start/End: Original strand, 26098778 - 26098928
Alignment:
Q  168 gtttcaagaagtaacaataattaataactggcctagtgatataaattgctttaaaggagcaagaagatgtggattggaatccccttaaaaagg-----tt 262  Q
    ||||||||||||| |||||||| ||||| ||||||||| |||||||   ||||||||||||||| | ||||| || ||||| | | ||||| |     ||    
T  26098778 gtttcaagaagtatcaataatttataaccggcctagtggtataaatccttttaaaggagcaagagggtgtgggtttgaatcacttcaaaaatgttttttt 26098877  T
Q  263 gtttttaata-aaatatgtaaaagtagaagattaaaaatgtaataagaaga 312  Q
     ||||||||| |||||| |||  |||||||||| || ||||||||||||||    
T  26098878 ttttttaatacaaatatataatcgtagaagattgaatatgtaataagaaga 26098928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 310 - 416
Target Start/End: Complemental strand, 8061412 - 8061304
Alignment:
Q  310 agaagatgtgtaagtgttgaacca--acaacctttaacaacttacagtactccattttcactacaacaaccaaattctaattgatataatacacctaata 407  Q
    |||||| ||| ||||||||||||   |||||||||| ||| |||  |||| |  ||| |||| ||||| ||||| ||| |||||||||||||||||||||    
T  8061412 agaagacgtggaagtgttgaacctgcacaacctttagcaatttatggtaccctctttccactgcaacatccaaaatctgattgatataatacacctaata 8061313  T
Q  408 tagtatata 416  Q
    |||||||||    
T  8061312 tagtatata 8061304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 297
Target Start/End: Complemental strand, 44598696 - 44598584
Alignment:
Q  186 aattaataactggcctagtgatataaattgctttaaaggagcaagaagatgtggattggaatccccttaaaaaggttgttttt-aataaaatatgtaaaa 284  Q
    |||||||| |||||| |||| |||||| ||  |||||||||||||| || |||| || |||||||||  ||| | || ||||| |||| |||||| || |    
T  44598696 aattaatagctggccaagtggtataaaatgtgttaaaggagcaagaggaagtgggttcgaatcccctcgaaacgtttttttttaaatacaatatgcaata 44598597  T
Q  285 gtagaagattaaa 297  Q
     ||||||||||||    
T  44598596 atagaagattaaa 44598584  T

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Target: chr3 (Bit Score: 73; Significance: 4e-33; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 120 - 462
Target Start/End: Complemental strand, 4221403 - 4221063
Alignment:
Q  120 tttgttgggggtgctaaacttctatgaaatatatattaaacggtaacagtttcaagaagtaacaataattaataactggcctagtgatataaattgcttt 219  Q
    |||||||||||||| ||||||||||||||||||||||||||      ||||||||||||||| ||||||||||||| | ||||||| ||||||||  ||     
T  4221403 tttgttgggggtgccaaacttctatgaaatatatattaaac------agtttcaagaagtaataataattaataaccgacctagtggtataaattttttg 4221310  T
Q  220 aaaggagcaagaagatgtggattggaa-tccccttaaaaaggt----tgtttttaataaaatatgtaaaagtagaagattaaaaatgtaataagaagaag 314  Q
    ||| |||||||| ||||||| || ||| |||    ||||| ||    | ||||||||| ||| ||||||||||||||| |||| ||| || ||||||| |    
T  4221309 aaaagagcaagaggatgtgggttcgaaatccaaaaaaaaatgtgttttttttttaatacaatttgtaaaagtagaaga-taaatatgcaaaaagaagatg 4221211  T
Q  315 atgtgtaagtgttgaaccaacaacctttaacaacttacagtactccattttcactacaacaaccaaattctaattgatataatacacctaatatagtata 414  Q
     |||| ||||||||||||| |||| |||| ||| ||||   || |||||| |||| ||||| |  || |||||||||| ||  |||||||||| |  |||    
T  4221210 -tgtggaagtgttgaaccagcaacttttagcaatttacgacaccccatttccactgcaacagctgaaatctaattgatttatgacacctaatacaaaata 4221112  T
Q  415 taa-caaaaatttggggatgtcatggcccctgtctgtccctaaagagat 462  Q
    |||  ||||  | ||||||| ||||||||||| ||||||||||||||||    
T  4221111 taaggaaaacctgggggatgccatggcccctgcctgtccctaaagagat 4221063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 159
Target Start/End: Complemental strand, 145532 - 145493
Alignment:
Q  120 tttgttgggggtgctaaacttctatgaaatatatattaaa 159  Q
    |||||||||||||| ||||||||||| |||||||||||||    
T  145532 tttgttgggggtgccaaacttctatgtaatatatattaaa 145493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 297
Target Start/End: Complemental strand, 29438550 - 29438422
Alignment:
Q  168 gtttcaagaagtaacaataattaataactggcctagtgatataaattgctttaaaggagcaagaagatgtggattggaatccccttaaaaaggttgtttt 267  Q
    |||||||| | || ||||||||||||  ||||| |||  |||||| || ||||||||||||||| || |||| || |||| |||||  ||| ||| ||||    
T  29438550 gtttcaagtattatcaataattaatagttggccaagttgtataaaatgttttaaaggagcaagaggaagtgggtttgaat-ccctttgaaacgttatttt 29438452  T
Q  268 taataaaatatgtaaaagtagaagattaaa 297  Q
     |||| |||||| || | ||||||||||||    
T  29438451 aaatacaatatgcaataatagaagattaaa 29438422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 128 - 462
Target Start/End: Complemental strand, 23826242 - 23825919
Alignment:
Q  128 gggtgctaaacttctatgaaatatatattaaacggtaacagtttcaagaagtaacaataattaataactggcctagtgatataaattgctttaaaggagc 227  Q
    |||||| ||||||||||| ||||||||||||||| |      ||||||||||||||||||||||||||||| |||||| ||||||||  || ||||||||    
T  23826242 gggtgccaaacttctatggaatatatattaaacgat------ttcaagaagtaacaataattaataactggtctagtggtataaattatttgaaaggagc 23826149  T
Q  228 aagaagatgtggattggaatccccttaaaaaggttgtttttaataaaatatgtaaaagtagaagattaaaaatgtaataagaagaagatgtgtaagtgtt 327  Q
    ||||   ||| | || ||||| | | |||||  || ||| ||||| || ||| |||| |||||||| ||| |||||| ||||||| ||   | || ||||    
T  23826148 aagagcgtgtaggtttgaatctcatcaaaaacattttttataatacaa-atggaaaaatagaagat-aaatatgtaaaaagaagatga---gaaaatgtt 23826054  T
Q  328 gaaccaacaacctttaacaacttacagtactccattttcactacaacaaccaaattctaattgatataatacacctaatatagtatataacaaaaatttg 427  Q
    ||||| ||||| |||||| | |||||| ||  ||| | ||||| ||||||  || | |||||| ||||||||||||||||||||||||||  ||||  ||    
T  23826053 gaaccgacaac-tttaacgatttacagcacctcatgtccactataacaactgaagtataattggtataatacacctaatatagtatataaagaaaacctg 23825955  T
Q  428 g-ggatgtcatggcccctgtctgtccctaaagagat 462  Q
    | ||||| |||||||||||  |||||||||||||||    
T  23825954 gaggatgacatggcccctgcttgtccctaaagagat 23825919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 220 - 312
Target Start/End: Complemental strand, 10371022 - 10370929
Alignment:
Q  220 aaaggagcaagaagatgtggattggaatccccttaaaaaggttgttttt-aataaaatatgtaaaagtagaagattaaaaatgtaataagaaga 312  Q
    |||||||||||  ||||||| ||  |||||||| ||||| ||| ||||| |||| |||||| ||||||| ||||||||| |||||| |||||||    
T  10371022 aaaggagcaagtggatgtgggttcaaatcccctcaaaaatgttttttttaaatataatatggaaaagtaaaagattaaatatgtaaaaagaaga 10370929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 159
Target Start/End: Original strand, 14876805 - 14876844
Alignment:
Q  120 tttgttgggggtgctaaacttctatgaaatatatattaaa 159  Q
    |||||||||||||| ||||||||||| |||||||||||||    
T  14876805 tttgttgggggtgccaaacttctatgtaatatatattaaa 14876844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 135 - 293
Target Start/End: Original strand, 32786643 - 32786794
Alignment:
Q  135 aaacttctatgaaatatatattaaacggtaacagtttcaagaagtaacaataattaataactggcctagtgatataaattgctttaaaggagcaagaaga 234  Q
    ||||||||||| |||||||||||||||||      |||||||||||| |||||||||||| |||| ||||  ||||||||| || |||| ||||||| ||    
T  32786643 aaacttctatggaatatatattaaacggt------ttcaagaagtaaaaataattaataattggcttagtcgtataaattgtttcaaagaagcaagagga 32786736  T
Q  235 tgtggattggaatccccttaaaaaggttgtttttaataaaatatgtaaaagtagaagat 293  Q
    ||||| || |||||| ||| |||| ||| ||||||||| ||||| ||||||||||||||    
T  32786737 tgtgggtttgaatcctctttaaaacgtt-tttttaatacaatatctaaaagtagaagat 32786794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 252
Target Start/End: Complemental strand, 14533784 - 14533700
Alignment:
Q  168 gtttcaagaagtaacaataattaataactggcctagtgatataaattgctttaaaggagcaagaagatgtggattggaatcccct 252  Q
    |||||||| | || |||||||||||| |||| | |||| |||||| || ||||||||||||||| || || | || |||||||||    
T  14533784 gtttcaagtattatcaataattaatagctggacaagtggtataaaatgttttaaaggagcaagatgaagtcggtttgaatcccct 14533700  T

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Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 120 - 258
Target Start/End: Original strand, 32633011 - 32633143
Alignment:
Q  120 tttgttgggggtgctaaacttctatgaaatatatattaaacggtaacagtttcaagaagtaacaataattaataactggcctagtgatataaattgcttt 219  Q
    |||||||||||||| || | |||||| |||||||||||||||||      |||||||||||||||||||||||||| || |||||| ||||||||| ||     
T  32633011 tttgttgggggtgccaatcatctatgtaatatatattaaacggt------ttcaagaagtaacaataattaataaccggtctagtggtataaattgtttg 32633104  T
Q  220 aaaggagcaagaagatgtggattggaatccccttaaaaa 258  Q
    |||| |||||||  |||||| || ||||||||| |||||    
T  32633105 aaagaagcaagagaatgtgggttcgaatcccctaaaaaa 32633143  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 30 - 116
Target Start/End: Complemental strand, 29465286 - 29465200
Alignment:
Q  30 cttcttagatgcagtatgagtattctcccttcctttgtttttgcaatcattcttttgatcatcagtggattggtaaaactgttcaac 116  Q
    |||||||||| | ||| |||  |||||||| ||||||| |||||||||||||| |||| |||||||||||||||||||||| |||||    
T  29465286 cttcttagatccggtaggaggcttctccctgcctttgtatttgcaatcattctgttgaacatcagtggattggtaaaactgctcaac 29465200  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 366 - 454
Target Start/End: Original strand, 15974128 - 15974217
Alignment:
Q  366 cactacaacaaccaaattctaattgatataatacacctaatatagtatataacaaaaat-ttggggatgtcatggcccctgtctgtccct 454  Q
    |||||||||||| ||||| | ||||| || ||||||||||||||||||||||  ||||| | ||||||| |||||| |||| ||| ||||    
T  15974128 cactacaacaactaaattgttattgaaatcatacacctaatatagtatataaggaaaatctaggggatgccatggcacctgcctgcccct 15974217  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 164
Target Start/End: Complemental strand, 16717243 - 16717199
Alignment:
Q  120 tttgttgggggtgctaaacttctatgaaatatatattaaacggta 164  Q
    |||||||||||||| |||||| |||| ||||||||||||| ||||    
T  16717243 tttgttgggggtgccaaacttttatggaatatatattaaatggta 16717199  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 164
Target Start/End: Complemental strand, 19645496 - 19645452
Alignment:
Q  120 tttgttgggggtgctaaacttctatgaaatatatattaaacggta 164  Q
    |||||||||||||| |||||| |||| ||||||||||||| ||||    
T  19645496 tttgttgggggtgccaaacttttatggaatatatattaaatggta 19645452  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 312
Target Start/End: Original strand, 46851937 - 46852068
Alignment:
Q  182 caataattaataactggcctagtgatataaattgctttaaaggagcaagaagatgtggattggaatccccttaaaaaggttgtttttaa-taaaatatgt 280  Q
    |||||||||||||| || | |||| |||||| |  |||||| |||||||  ||||| | ||  |||||||| |||||  || | ||||| || ||||||     
T  46851937 caataattaataaccggtcaagtggtataaaatattttaaatgagcaagtggatgttggtttaaatcccctcaaaaactttttatttaaatacaatatgc 46852036  T
Q  281 aaaagtagaagattaaaaatgtaataagaaga 312  Q
    ||||||||||| |||||||||||| |||||||    
T  46852037 aaaagtagaaggttaaaaatgtaaaaagaaga 46852068  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 159
Target Start/End: Complemental strand, 50070226 - 50070187
Alignment:
Q  120 tttgttgggggtgctaaacttctatgaaatatatattaaa 159  Q
    |||||||||||||| ||||||||||| |||||||||||||    
T  50070226 tttgttgggggtgccaaacttctatgtaatatatattaaa 50070187  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 409
Target Start/End: Original strand, 52797844 - 52797887
Alignment:
Q  366 cactacaacaaccaaattctaattgatataatacacctaatata 409  Q
    ||||||||||||| |||||| ||||||||| |||||||||||||    
T  52797844 cactacaacaaccgaattcttattgatatattacacctaatata 52797887  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 159
Target Start/End: Complemental strand, 33226323 - 33226285
Alignment:
Q  121 ttgttgggggtgctaaacttctatgaaatatatattaaa 159  Q
    ||||||||||||| ||||||||||| |||||||||||||    
T  33226323 ttgttgggggtgccaaacttctatgtaatatatattaaa 33226285  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 209
Target Start/End: Original strand, 2930410 - 2930451
Alignment:
Q  168 gtttcaagaagtaacaataattaataactggcctagtgatat 209  Q
    |||||||||||||||||||||||||||| | | |||||||||    
T  2930410 gtttcaagaagtaacaataattaataaccgacgtagtgatat 2930451  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 417
Target Start/End: Original strand, 46852133 - 46852170
Alignment:
Q  380 aattctaattgatataatacacctaatatagtatataa 417  Q
    ||||||||||| |||||||||||||||||| |||||||    
T  46852133 aattctaattgttataatacacctaatataatatataa 46852170  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 445
Target Start/End: Complemental strand, 26494504 - 26494424
Alignment:
Q  366 cactacaacaaccaaattctaattgatataatacacctaatatagtatataacaaaaat-ttggggatgtcatggcccctg 445  Q
    |||| ||||||| ||||| | ||||| || ||||||||||||||||||||||   |||| | |||||||||||||| ||||    
T  26494504 cactgcaacaactaaattattattgaaattatacacctaatatagtatataagggaaatctgggggatgtcatggcacctg 26494424  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 232
Target Start/End: Original strand, 52490263 - 52490327
Alignment:
Q  168 gtttcaagaagtaacaataattaataactggcctagtgatataaattgctttaaaggagcaagaa 232  Q
    |||||| ||||||||||||| ||||||| || ||||| |||||||||| || |||| | ||||||    
T  52490263 gtttcacgaagtaacaataactaataaccggtctagttatataaattgtttgaaagcatcaagaa 52490327  T

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Target: scaffold0325 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 159
Target Start/End: Original strand, 19783 - 19821
Alignment:
Q  121 ttgttgggggtgctaaacttctatgaaatatatattaaa 159  Q
    ||||||||||||| ||||||||||| |||||||||||||    
T  19783 ttgttgggggtgccaaacttctatgtaatatatattaaa 19821  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 257
Target Start/End: Original strand, 24888009 - 24888140
Alignment:
Q  120 tttgttgggggtgctaaacttctatgaaatatatattaaacggtaacagtttcaagaagtaacaataattaataactggcctagtgatataaattgcttt 219  Q
    |||||||||||||| ||| || |||| ||||||||||||  |||      |||||| | || |||||||||||| ||||   |||| |||||| || |||    
T  24888009 tttgttgggggtgccaaaattttatggaatatatattaactggt------ttcaagtattatcaataattaatagctggataagtggtataaaatgtttt 24888102  T
Q  220 aaaggagcaagaagatgtggattggaatccccttaaaa 257  Q
    |||||||||||| || |||| || ||||||||| ||||    
T  24888103 aaaggagcaagaggaagtgggtttgaatcccctcaaaa 24888140  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 462
Target Start/End: Original strand, 27084455 - 27084539
Alignment:
Q  379 aaattctaattgatataatacacctaatatagtatataacaaaaattt-ggggatgtcatggcccctgtctgtccctaaagagat 462  Q
    |||| ||| |||| |||||||||||||||||||||||||  ||| ||| ||||||| |||||| |||| ||  ||| ||||||||    
T  27084455 aaatcctagttgaaataatacacctaatatagtatataaggaaactttgggggatgccatggcacctgccttcccccaaagagat 27084539  T

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Target: scaffold0060 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 160
Target Start/End: Complemental strand, 35970 - 35934
Alignment:
Q  124 ttgggggtgctaaacttctatgaaatatatattaaac 160  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  35970 ttgggggtgccaaacttccatgaaatatatattaaac 35934  T

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