View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3546_low_17 (Length: 455)
Name: NF3546_low_17
Description: NF3546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3546_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 24 - 448
Target Start/End: Original strand, 35612887 - 35613312
Alignment:
| Q |
24 |
ttatacacgccttgtgattaaatggtaaggttcacaacgagtttcatataatcacattaggtcaccacgatttcagcaaaaattatcttttgaaatttta |
123 |
Q |
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| T |
35612887 |
ttatatacggcttgtgattaaatgttaaggttcacaacgagttttacagaatcacaataggtcatcacgatttcagtaaaaactatctttcgaaacttta |
35612986 |
T |
|
| Q |
124 |
atagtagcttct-aaaaaacacgcgtctcttgcctcattgacacataaaccaacaatgtagatgttatcgtgcttttgtagacttaccactgatccaaac |
222 |
Q |
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| T |
35612987 |
atagtagcttctgaaaaaacacacgtctcttgcttcactgacacaaaaacaaacagtgtagatgtcatcgtgattttatagacttaccgctgatccaaac |
35613086 |
T |
|
| Q |
223 |
atgcatatcatcttggagattttaaagattctacttgagattttccacatggacccctcattctaatgaaaagcctatattcatcaaaggtcatagcagg |
322 |
Q |
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| T |
35613087 |
atgcgtatcatcttggagattttaaagattcaacttgagattttccacatggacccctcattctaatgaaaagcctatattcatcaaaggtcatagcagg |
35613186 |
T |
|
| Q |
323 |
atagagggcaggtttatctggctttaccaattccttagctggctctattggaatgtcactttttggattgtagaagaaagctaaggaaactctctctttg |
422 |
Q |
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|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
35613187 |
gtagagggcaggtttatctggctttaccaattcttttgctggctctattggaatgtcacttttgggattgtagaagaaggctaaggaaactctctctttg |
35613286 |
T |
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| Q |
423 |
tgtgagtttgctagtactctctgctc |
448 |
Q |
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| T |
35613287 |
tgtgagtttgctattactctatgctc |
35613312 |
T |
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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 248 - 335
Target Start/End: Original strand, 31789746 - 31789833
Alignment:
| Q |
248 |
agattctacttgagattttccacatggacccctcattctaatgaaaagcctatattcatcaaaggtcatagcaggatagagggcaggt |
335 |
Q |
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|||||| ||||||||||| ||||| || ||||||||||||||||| || || || |||||||||||||| || || ||||| |||||| |
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| T |
31789746 |
agattcaacttgagatttgccacaaggtcccctcattctaatgaagagtctgtactcatcaaaggtcattgctgggtagagtgcaggt |
31789833 |
T |
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