View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3546_low_18 (Length: 438)
Name: NF3546_low_18
Description: NF3546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3546_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 17 - 428
Target Start/End: Original strand, 28430950 - 28431366
Alignment:
| Q |
17 |
accttcataatcgaccgaaatttgaactcaagttcaattaagatagaattaattccaatcactcgagttcggttgttacatgattactagatccctctaa |
116 |
Q |
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| T |
28430950 |
accttgataatcgaccgaaatttgaactcaagttcaattaagatagaattaactccaatcactcgagttcggttgttacatgattactagatccctctaa |
28431049 |
T |
|
| Q |
117 |
aaactaacgaaatnnnnnnnn---ttacatgaaggtgacaatacatttattt--attagcttgaaaccaaacacatttataatgtctccttctttctatt |
211 |
Q |
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| T |
28431050 |
agactaacgaaataaataaaaaatttacatgaaggtgaccatacatttatttttattagcttgaaaccaaacacatttataatgtctccttctttttatt |
28431149 |
T |
|
| Q |
212 |
taggctgcaacgggcaccttggatggtatcgttgacacagtttccgccgtccatcctttgttacctttgattggtcttctgaaatctcatggaaaacttg |
311 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
28431150 |
taggctgcaacgggcaccttggatggtatcattgacacagtttctgccgtccatcctttgttacctttgattggtcttttgaaatctcatggaaaacttg |
28431249 |
T |
|
| Q |
312 |
ttatggttggtgcacctgagaagcctctggagctaccagtatttcctttacttatgggtaagcacatgcaaaataatacannnnnnnnnataaagtacac |
411 |
Q |
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| T |
28431250 |
ttatggttggtgcacctgagaagcctctggagctaccagtatttcctttacttatgggtaagctcatgcaaaataatacatttttttttataaagtacac |
28431349 |
T |
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| Q |
412 |
ttgtcattgagcctatg |
428 |
Q |
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| T |
28431350 |
ttgtcattgagcctatg |
28431366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 212 - 364
Target Start/End: Complemental strand, 13453579 - 13453427
Alignment:
| Q |
212 |
taggctgcaacgggcaccttggatggtatcgttgacacagtttccgccgtccatcctttgttacctttgattggtcttctgaaatctcatggaaaacttg |
311 |
Q |
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||||||||||||| || ||||||||||| | ||||||||||| || | ||||| | |||||| |||||||| | || || ||||||||||| |||| |
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| T |
13453579 |
taggctgcaacggctactttggatggtattatcgacacagtttcagcggatcatccgctattacctctgattggtttactcaagtctcatggaaagcttg |
13453480 |
T |
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| Q |
312 |
ttatggttggtgcacctgagaagcctctggagctaccagtatttcctttactt |
364 |
Q |
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| T |
13453479 |
taatggttggtgcacctgaaaagcctctagagcttcctgtttttcctttactt |
13453427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 290 - 374
Target Start/End: Original strand, 13385827 - 13385911
Alignment:
| Q |
290 |
ctgaaatctcatggaaaacttgttatggttggtgcacctgagaagcctctggagctaccagtatttcctttacttatgggtaagc |
374 |
Q |
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||||| ||||||||||||||||| |||||||||| |||||| |||||||||||| | || || ||||||||| || ||||||||| |
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| T |
13385827 |
ctgaagtctcatggaaaacttgtaatggttggtgtacctgacaagcctctggagatccccgtctttcctttaattttgggtaagc |
13385911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 291 - 374
Target Start/End: Original strand, 13389654 - 13389737
Alignment:
| Q |
291 |
tgaaatctcatggaaaacttgttatggttggtgcacctgagaagcctctggagctaccagtatttcctttacttatgggtaagc |
374 |
Q |
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|||| ||||||||||||||||| |||||||||| |||||| |||||| ||||| | || || ||||||||| || ||||||||| |
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| T |
13389654 |
tgaagtctcatggaaaacttgtaatggttggtgtacctgacaagcctttggagatccccgtctttcctttaattttgggtaagc |
13389737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 293 - 375
Target Start/End: Original strand, 13411373 - 13411455
Alignment:
| Q |
293 |
aaatctcatggaaaacttgttatggttggtgcacctgagaagcctctggagctaccagtatttcctttacttatgggtaagca |
375 |
Q |
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|||||||||||||| ||||| |||||||||| || ||||||||||| ||| |||||| || |||||||| |||||||||| |
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| T |
13411373 |
aaatctcatggaaagcttgtattggttggtgccccagagaagcctcttgagttaccagcatggcctttactagtgggtaagca |
13411455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 375
Target Start/End: Complemental strand, 13378591 - 13378516
Alignment:
| Q |
300 |
atggaaaacttgttatggttggtgcacctgagaagcctctggagctaccagtatttcctttacttatgggtaagca |
375 |
Q |
| |
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|||| ||||||||||||||||| || || ||||||||| ||||| | ||||||||| |||| || |||||||||| |
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| T |
13378591 |
atggtaaacttgttatggttggagctccagagaagcctttggagtttccagtattttctttgattgtgggtaagca |
13378516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 323
Target Start/End: Complemental strand, 13412808 - 13412715
Alignment:
| Q |
230 |
ttggatggtatcgttgacacagtttccgccgtccatcctttgttacctttgattggtcttctgaaatctcatggaaaacttgttatggttggtg |
323 |
Q |
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||||||||||| ||||||||||||| || || |||||| | ||||| |||||||||| |||| ||||||||||| ||| | ||| |||||| |
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| T |
13412808 |
ttggatggtattattgacacagtttcagctgttcatcctctcttaccaatgattggtctcttgaagtctcatggaaagcttataatgcttggtg |
13412715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 293 - 345
Target Start/End: Original strand, 13394054 - 13394106
Alignment:
| Q |
293 |
aaatctcatggaaaacttgttatggttggtgcacctgagaagcctctggagct |
345 |
Q |
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|||| ||| ||||||||||| ||||| ||||||||||| ||||||| |||||| |
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| T |
13394054 |
aaatatcacggaaaacttgtaatggtcggtgcacctgacaagcctccggagct |
13394106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 323
Target Start/End: Complemental strand, 13426013 - 13425953
Alignment:
| Q |
263 |
catcctttgttacctttgattggtcttctgaaatctcatggaaaacttgttatggttggtg |
323 |
Q |
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|||||| | ||||| ||||||||| | |||||||| ||||||||||||| |||||||||| |
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| T |
13426013 |
catcctatcttaccattgattggtttattgaaatctaatggaaaacttgtaatggttggtg |
13425953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 230 - 345
Target Start/End: Complemental strand, 47600976 - 47600861
Alignment:
| Q |
230 |
ttggatggtatcgttgacacagtttccgccgtccatcctttgttacctttgattggtcttctgaaatctcatggaaaacttgttatggttggtgcacctg |
329 |
Q |
| |
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|||||||||||| ||||||||||||| || | |||||| | | |||| | ||||| | ||||| ||||||||||||||||| ||||||||||| || | |
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| T |
47600976 |
ttggatggtatcattgacacagtttcagctgaacatcctctctcacctctaattggattactgaagtctcatggaaaacttgtaatggttggtgctccag |
47600877 |
T |
|
| Q |
330 |
agaagcctctggagct |
345 |
Q |
| |
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||||||||||||||| |
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| T |
47600876 |
cgaagcctctggagct |
47600861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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