View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3546_low_19 (Length: 433)

Name: NF3546_low_19
Description: NF3546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3546_low_19
NF3546_low_19
[»] chr6 (15 HSPs)
chr6 (102-231)||(28712399-28712527)
chr6 (102-231)||(241986-242115)
chr6 (103-213)||(10163208-10163317)
chr6 (121-237)||(17352720-17352835)
chr6 (109-217)||(24154118-24154226)
chr6 (102-217)||(13002788-13002903)
chr6 (102-231)||(16142568-16142698)
chr6 (104-226)||(16143183-16143306)
chr6 (102-237)||(19723826-19723960)
chr6 (111-217)||(11744581-11744688)
chr6 (113-237)||(4030997-4031120)
chr6 (102-231)||(16142872-16143002)
chr6 (102-214)||(16793322-16793436)
chr6 (114-214)||(34992415-34992513)
chr6 (148-197)||(16177337-16177385)
[»] chr8 (18 HSPs)
chr8 (121-237)||(28291533-28291648)
chr8 (94-226)||(41651946-41652078)
chr8 (115-215)||(22449988-22450088)
chr8 (102-215)||(32352222-32352335)
chr8 (102-215)||(32368883-32368996)
chr8 (102-217)||(15340865-15340980)
chr8 (102-217)||(15429930-15430045)
chr8 (102-217)||(15521234-15521349)
chr8 (102-212)||(6017586-6017695)
chr8 (94-217)||(11030695-11030820)
chr8 (134-237)||(23355471-23355573)
chr8 (114-237)||(19709456-19709578)
chr8 (102-237)||(5892615-5892748)
chr8 (102-169)||(22454661-22454728)
chr8 (102-141)||(13110325-13110364)
chr8 (102-141)||(16600685-16600724)
chr8 (171-217)||(27123652-27123698)
chr8 (94-138)||(10661813-10661857)
[»] chr5 (14 HSPs)
chr5 (103-231)||(31532985-31533112)
chr5 (102-237)||(24663571-24663705)
chr5 (114-231)||(36499511-36499628)
chr5 (131-226)||(24309081-24309174)
chr5 (131-226)||(24364152-24364245)
chr5 (114-214)||(9423165-9423263)
chr5 (133-215)||(30985526-30985606)
chr5 (102-215)||(10236092-10236203)
chr5 (102-160)||(28619256-28619314)
chr5 (102-231)||(21390684-21390812)
chr5 (126-217)||(22848055-22848146)
chr5 (171-237)||(22987747-22987812)
chr5 (102-197)||(23379374-23379472)
chr5 (94-217)||(19217974-19218098)
[»] chr2 (15 HSPs)
chr2 (94-217)||(28760598-28760721)
chr2 (121-231)||(17676589-17676698)
chr2 (119-231)||(17636731-17636842)
chr2 (102-216)||(15437989-15438104)
chr2 (121-237)||(2482039-2482154)
chr2 (102-215)||(32890435-32890548)
chr2 (122-217)||(17161967-17162062)
chr2 (122-197)||(19919462-19919535)
chr2 (102-237)||(21498068-21498202)
chr2 (103-212)||(30999851-30999958)
chr2 (94-217)||(26650945-26651070)
chr2 (103-217)||(23389157-23389268)
chr2 (121-217)||(31404052-31404150)
chr2 (102-141)||(24544002-24544041)
chr2 (102-138)||(19878996-19879032)
[»] chr7 (12 HSPs)
chr7 (102-231)||(25621056-25621182)
chr7 (121-237)||(1545595-1545710)
chr7 (102-214)||(4978780-4978893)
chr7 (102-231)||(7524694-7524822)
chr7 (125-214)||(7947991-7948078)
chr7 (114-214)||(11993877-11993975)
chr7 (121-215)||(12468965-12469061)
chr7 (146-217)||(9022536-9022607)
chr7 (146-217)||(41131964-41132035)
chr7 (121-207)||(12331010-12331098)
chr7 (171-231)||(5531758-5531817)
chr7 (171-207)||(28037212-28037248)
[»] chr4 (9 HSPs)
chr4 (123-237)||(24924890-24925003)
chr4 (102-217)||(26654078-26654193)
chr4 (121-226)||(16288774-16288878)
chr4 (102-217)||(12424801-12424914)
chr4 (102-211)||(16928563-16928674)
chr4 (102-181)||(16647126-16647205)
chr4 (120-237)||(12568151-12568268)
chr4 (102-217)||(9409154-9409271)
chr4 (122-198)||(41457566-41457644)
[»] chr3 (17 HSPs)
chr3 (102-237)||(27717914-27718048)
chr3 (121-237)||(17439084-17439199)
chr3 (110-215)||(53589067-53589175)
chr3 (102-226)||(12145032-12145155)
chr3 (122-237)||(15987586-15987700)
chr3 (114-214)||(44450826-44450924)
chr3 (102-217)||(48896078-48896193)
chr3 (121-217)||(15759625-15759723)
chr3 (102-214)||(25321197-25321307)
chr3 (102-217)||(26010937-26011054)
chr3 (102-214)||(14132061-14132173)
chr3 (120-217)||(4026350-4026445)
chr3 (120-231)||(7536083-7536198)
chr3 (102-160)||(9101640-9101699)
chr3 (102-217)||(17132739-17132854)
chr3 (121-207)||(13409882-13409970)
chr3 (187-215)||(45279949-45279977)
[»] chr1 (9 HSPs)
chr1 (102-217)||(25018686-25018801)
chr1 (125-217)||(23455194-23455286)
chr1 (122-237)||(33379319-33379433)
chr1 (125-214)||(24633279-24633368)
chr1 (109-217)||(11821868-11821974)
chr1 (102-217)||(36571656-36571772)
chr1 (120-217)||(13962910-13963005)
chr1 (102-141)||(13202065-13202104)
chr1 (103-159)||(13966513-13966568)
[»] scaffold0024 (1 HSPs)
scaffold0024 (102-231)||(38848-38977)
[»] scaffold0431 (1 HSPs)
scaffold0431 (102-217)||(5061-5174)
[»] scaffold0320 (1 HSPs)
scaffold0320 (102-226)||(6423-6547)
[»] scaffold0167 (1 HSPs)
scaffold0167 (102-226)||(10237-10361)
[»] scaffold0040 (1 HSPs)
scaffold0040 (102-217)||(26862-26979)
[»] scaffold0039 (2 HSPs)
scaffold0039 (134-231)||(48269-48365)
scaffold0039 (137-215)||(33239-33317)
[»] scaffold1024 (1 HSPs)
scaffold1024 (125-217)||(2929-3021)
[»] scaffold0148 (1 HSPs)
scaffold0148 (102-207)||(23055-23158)
[»] scaffold0016 (1 HSPs)
scaffold0016 (102-197)||(12993-13091)


Alignment Details
Target: chr6 (Bit Score: 86; Significance: 6e-41; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 102 - 231
Target Start/End: Complemental strand, 28712527 - 28712399
Alignment:
Q  102 gttttccataggaaaaacaggtcgcaaatcacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctg 201  Q
    ||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||| |||| || || ||||||||||||||| |||||||||||||||    
T  28712527 gtttttcataagaaaaacatgtcgcaaatcacttatagaattctagcactcgaagtatcagcgtctagagaaaagagtcatatataatgtatgtaatctg 28712428  T
Q  202 atttgtcgaaccacctcttacattattgca 231  Q
    |||||||||||||||| |||||||| ||||    
T  28712427 atttgtcgaaccacct-ttacattaatgca 28712399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 102 - 231
Target Start/End: Original strand, 241986 - 242115
Alignment:
Q  102 gttttccataggaaaaacaggtcgcaaatcacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctg 201  Q
    ||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||| | |||||||||||||||    
T  241986 gtttttcatatgaaaaataggtcgcaaatcacttatagaattctagcactcgaagtaccagcgtctagagaaaagagtcatacataatgtatgtaatctg 242085  T
Q  202 atttgtcgaaccacctcttacattattgca 231  Q
    || |||| |||||||| ||| |||| ||||    
T  242086 atgtgtcaaaccaccttttatattaatgca 242115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 103 - 213
Target Start/End: Original strand, 10163208 - 10163317
Alignment:
Q  103 ttttccataggaaaaacaggtcgcaaatcacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctga 202  Q
    |||| |||||||||||| |||||||||||| ||||||||||||||||||| |||||||||| || || ||||||||||||||||||||||||||| ||||    
T  10163208 tttttcataggaaaaac-ggtcgcaaatcatttatagaattctagcactcaaagtaccagcgtctagagaaaagagtcatatagaatgtatgtaaactga 10163306  T
Q  203 tttgtcgaacc 213  Q
    |||||||||||    
T  10163307 tttgtcgaacc 10163317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 121 - 237
Target Start/End: Complemental strand, 17352835 - 17352720
Alignment:
Q  121 ggtcgcaaatcacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctgatttgtcgaaccacctctt 220  Q
    |||||||||||||||||||||||||||||||| |||||||||| || || ||||||||||||| | ||||  ||||||||||||||||||||||| | ||    
T  17352835 ggtcgcaaatcacttatagaattctagcactcaaagtaccagcgtctagagaaaagagtcatacataatgcttgtaatctgatttgtcgaaccacat-tt 17352737  T
Q  221 acattattgcattgcaa 237  Q
    |||||| |||| |||||    
T  17352736 acattaatgcaatgcaa 17352720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 109 - 217
Target Start/End: Original strand, 24154118 - 24154226
Alignment:
Q  109 ataggaaaaacaggtcgcaaatcacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctgatttgtc 208  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||  | || |  ||||||||||||| | ||||||||||| ||||||||||    
T  24154118 ataggaaaaacaggtcgcaaatcatttgtagaattctagcactcgaagtaccgacgtctaaagaaaagagtcatacaaaatgtatgtaaactgatttgtc 24154217  T
Q  209 gaaccacct 217  Q
    |||||||||    
T  24154218 gaaccacct 24154226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 102 - 217
Target Start/End: Original strand, 13002788 - 13002903
Alignment:
Q  102 gttttccataggaaaaacaggtcgcaaatcacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctg 201  Q
    ||||| ||||||||||||   | |||||||| |||||||||||||||||||||||||||  | || || ||||||||||||| ||||||||||||| |||    
T  13002788 gtttttcataggaaaaacgaatagcaaatcatttatagaattctagcactcgaagtaccgacgtctagagaaaagagtcatacagaatgtatgtaaactg 13002887  T
Q  202 atttgtcgaaccacct 217  Q
    ||||||||||||||||    
T  13002888 atttgtcgaaccacct 13002903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 102 - 231
Target Start/End: Complemental strand, 16142698 - 16142568
Alignment:
Q  102 gttttccataggaaaaacaggtcgcaaatcacttatagaa-ttcta-gcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatc 199  Q
    |||||||||| | ||||  |||||||||||| |||||||| ||||| |||||||||||||| ||||  || |||||||||||||||||||||||||||||    
T  16142698 gttttccatatggaaaatgggtcgcaaatcatttatagaaattctaagcactcgaagtaccggcatttagggaaaagagtcatatagaatgtatgtaatc 16142599  T
Q  200 tgatttgtcgaaccacctcttacattattgca 231  Q
    ||  |||||||||||||| |||||||| ||||    
T  16142598 tgcattgtcgaaccacct-ttacattaatgca 16142568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 104 - 226
Target Start/End: Complemental strand, 16143306 - 16143183
Alignment:
Q  104 tttccataggaaaaacaggtcgcaaatcacttatagaa-ttcta-gcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctg 201  Q
    |||||||| | ||||  |||||||||||| |||||||| ||||| |||| || |||||| || || || ||||||||| |||||||||||||||||||||    
T  16143306 tttccatatggaaaatcggtcgcaaatcaattatagaaattctaagcacccgtagtaccggcgtctagagaaaagagttatatagaatgtatgtaatctg 16143207  T
Q  202 atttgtcgaaccacctcttacatta 226  Q
    |||||||||||||||| ||||||||    
T  16143206 atttgtcgaaccacct-ttacatta 16143183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 102 - 237
Target Start/End: Original strand, 19723826 - 19723960
Alignment:
Q  102 gttttccataggaaaaacaggtcgcaaatcacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctg 201  Q
    |||||||||| | ||||  ||||||||||   ||||||||||||||||||||||| ||| || || || ||||||||||||| | |||||||||||||||    
T  19723826 gttttccatatggaaaatgggtcgcaaattgtttatagaattctagcactcgaagaaccggcgtctagagaaaagagtcatacataatgtatgtaatctg 19723925  T
Q  202 atttgtcgaaccacctcttacattattgcattgcaa 237  Q
    |||||  |||| |||| |||||||| |||| |||||    
T  19723926 atttgatgaactacct-ttacattaatgcaatgcaa 19723960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 111 - 217
Target Start/End: Complemental strand, 11744688 - 11744581
Alignment:
Q  111 aggaaaaacaggtcgcaaatcacttatagaa-ttctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctgatttgtcg 209  Q
    |||||||||| || |||||||| |||| ||| || ||||||||||||||||||| || || ||||||||||||| ||||| ||| ||| ||||||||| |    
T  11744688 aggaaaaacatgtagcaaatcatttatggaaattttagcactcgaagtaccagcgtccagagaaaagagtcatacagaatctatataaactgatttgttg 11744589  T
Q  210 aaccacct 217  Q
    ||||||||    
T  11744588 aaccacct 11744581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 113 - 237
Target Start/End: Original strand, 4030997 - 4031120
Alignment:
Q  113 gaaaaacaggtcgcaaatcacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctgatttgtcgaac 212  Q
    |||||| ||| ||||||||||||||| ||||||| ||||||||||| |  |||  || ||||| ||||||| |||||||| |||||| | ||||| ||||    
T  4030997 gaaaaataggccgcaaatcacttataaaattctaacactcgaagtatcgacatttagagaaaacagtcatacagaatgtaagtaatcaggtttgttgaac 4031096  T
Q  213 cacctcttacattattgcattgcaa 237  Q
    ||||| |||||||| |||| |||||    
T  4031097 cacct-ttacattaatgcaatgcaa 4031120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 102 - 231
Target Start/End: Complemental strand, 16143002 - 16142872
Alignment:
Q  102 gttttccataggaaaaacaggtcgcaaatcacttatagaa-ttcta-gcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatc 199  Q
    |||||||||| | ||||  |||||||||||| ||||| || ||||| |||||||||||||  || |  || ||||||||||||| |||||||||||||||    
T  16143002 gttttccatatggaaaatgggtcgcaaatcatttatataaattctaagcactcgaagtactggcgtttagagaaaagagtcatacagaatgtatgtaatc 16142903  T
Q  200 tgatttgtcgaaccacctcttacattattgca 231  Q
    ||  |||||||||||||| |||||||| ||||    
T  16142902 tgcattgtcgaaccacct-ttacattaatgca 16142872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 102 - 214
Target Start/End: Complemental strand, 16793436 - 16793322
Alignment:
Q  102 gttttccataggaaaaacaggtcgcaaatcacttatagaa-ttcta-gcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatc 199  Q
    |||||||||| | |||| | ||||||||||||||| |||| ||||| |||||||||||| | |  || || ||||||||||||| |  ||||||||||||    
T  16793436 gttttccatatggaaaataagtcgcaaatcacttaaagaaattctaagcactcgaagtatcggtgtctagagaaaagagtcatacaatatgtatgtaatc 16793337  T
Q  200 tgatttgtcgaacca 214  Q
    |||||||||||||||    
T  16793336 tgatttgtcgaacca 16793322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 114 - 214
Target Start/End: Complemental strand, 34992513 - 34992415
Alignment:
Q  114 aaaaacaggtcgcaaatcacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctgatttgtcgaacc 213  Q
    ||||| |||||| |||||| ||||| ||||||| |||||||||||||  | || || ||||||||||| ||  |||||||||||  ||||||||||||||    
T  34992513 aaaaagaggtcgtaaatcatttataaaattctatcactcgaagtaccgacgtctagagaaaagagtcacat--aatgtatgtaacttgatttgtcgaacc 34992416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 197
Target Start/End: Complemental strand, 16177385 - 16177337
Alignment:
Q  148 cactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaa 197  Q
    |||||||||||||| ||| ||| ||||||||||||| |||||||||||||    
T  16177385 cactcgaagtaccaacat-aagagaaaagagtcataaagaatgtatgtaa 16177337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 6e-38; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 121 - 237
Target Start/End: Original strand, 28291533 - 28291648
Alignment:
Q  121 ggtcgcaaatcacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctgatttgtcgaaccacctctt 220  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||| |||||||||||||||||||| |||| ||    
T  28291533 ggtcgcaaatcacttatagaattctagcactcgaagtaccatcatctagagaaaagagtcatatagaatgtgtgtaatctgatttgtcgaacaacct-tt 28291631  T
Q  221 acattattgcattgcaa 237  Q
    |||||| |||| |||||    
T  28291632 acattaatgcaatgcaa 28291648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 94 - 226
Target Start/End: Original strand, 41651946 - 41652078
Alignment:
Q  94 aaataagtgttttccataggaaaaacagg-tcgcaaatcacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgta 192  Q
    ||||||| ||||| ||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||  || || ||||||||||||| ||||||||    
T  41651946 aaataagagtttttcataggaaaaacagggtcggaaatcatttatagaattctagcactcgaagtaccagtgtctagagaaaagagtcatacagaatgta 41652045  T
Q  193 tgtaatctgatttgtcgaaccacctcttacatta 226  Q
    |||||| |||||||||||||||||| ||||||||    
T  41652046 tgtaatttgatttgtcgaaccacct-ttacatta 41652078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 115 - 215
Target Start/End: Original strand, 22449988 - 22450088
Alignment:
Q  115 aaaacaggtcgcaaatcacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctgatttgtcgaacca 214  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||| | ||||||||||||||||||||||||||||    
T  22449988 aaaaaaggtcgcaaatcacttatagaattctagcactcgaagtaccagcgtccagagaaaagagtcatacaaaatgtatgtaatctgatttgtcgaacca 22450087  T
Q  215 c 215  Q
    |    
T  22450088 c 22450088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 102 - 215
Target Start/End: Complemental strand, 32352335 - 32352222
Alignment:
Q  102 gttttccataggaaaaacaggtcgcaaatcacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctg 201  Q
    ||||| |||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||| || || ||||||||||||| | |||||||||||| ||    
T  32352335 gtttttcataagaaaaacgggtcgcaaatcacttatagaattatagcactcgaagtaccagcttccagagaaaagagtcatacaaaatgtatgtaatatg 32352236  T
Q  202 atttgtcgaaccac 215  Q
    ||||||||||||||    
T  32352235 atttgtcgaaccac 32352222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 102 - 215
Target Start/End: Complemental strand, 32368996 - 32368883
Alignment:
Q  102 gttttccataggaaaaacaggtcgcaaatcacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctg 201  Q
    ||||| |||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||| || || ||||||||||||| | |||||||||||| ||    
T  32368996 gtttttcataagaaaaacgggtcgcaaatcacttatagaattatagcactcgaagtaccagcttccagagaaaagagtcatacaaaatgtatgtaatatg 32368897  T
Q  202 atttgtcgaaccac 215  Q
    ||||||||||||||    
T  32368896 atttgtcgaaccac 32368883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 102 - 217
Target Start/End: Original strand, 15340865 - 15340980
Alignment:
Q  102 gttttccataggaaaaacaggtcgcaaatcacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctg 201  Q
    ||||| |||| ||||||  |||||||||||| ||||||||||||||||||| |||||| ||| || || ||||||||||||| ||||||||||||| |||    
T  15340865 gtttttcatatgaaaaattggtcgcaaatcatttatagaattctagcactcaaagtactagcgtctagagaaaagagtcatacagaatgtatgtaaactg 15340964  T
Q  202 atttgtcgaaccacct 217  Q
    ||||||| ||||||||    
T  15340965 atttgtcaaaccacct 15340980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 102 - 217
Target Start/End: Original strand, 15429930 - 15430045
Alignment:
Q  102 gttttccataggaaaaacaggtcgcaaatcacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctg 201  Q
    ||||| |||| ||||||  |||||||||||| ||||||||||||||||||| |||||| ||| || || ||||||||||||| ||||||||||||| |||    
T  15429930 gtttttcatatgaaaaattggtcgcaaatcatttatagaattctagcactcaaagtactagcgtctagagaaaagagtcatacagaatgtatgtaaactg 15430029  T
Q  202 atttgtcgaaccacct 217  Q
    ||||||| ||||||||    
T  15430030 atttgtcaaaccacct 15430045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 102 - 217
Target Start/End: Original strand, 15521234 - 15521349
Alignment:
Q  102 gttttccataggaaaaacaggtcgcaaatcacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctg 201  Q
    ||||| |||| ||||||  |||||||||||| ||||||||||||||||||| |||||| ||| || || ||||||||||||| ||||||||||||| |||    
T  15521234 gtttttcatatgaaaaattggtcgcaaatcatttatagaattctagcactcaaagtactagcgtctagagaaaagagtcatacagaatgtatgtaaactg 15521333  T
Q  202 atttgtcgaaccacct 217  Q
    ||||||| ||||||||    
T  15521334 atttgtcaaaccacct 15521349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 102 - 212
Target Start/End: Complemental strand, 6017695 - 6017586
Alignment:
Q  102 gttttccataggaaaaacaggtcgcaaatcacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctg 201  Q
    ||||| ||||||||||||| ||||||||| | ||||||||||||||||||||||||||| || || || | ||||||||||| | ||||||||||| |||    
T  6017695 gtttttcataggaaaaacatgtcgcaaattatttatagaattctagcactcgaagtacctgcgtctagag-aaagagtcatacataatgtatgtaaactg 6017597  T
Q  202 atttgtcgaac 212  Q
    |||||||||||    
T  6017596 atttgtcgaac 6017586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 94 - 217
Target Start/End: Complemental strand, 11030820 - 11030695
Alignment:
Q  94 aaataagtgttttccataggaaaaacaggtcgcaaatcacttatagaatt--ctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgt 191  Q
    ||||||| ||||| |||||||||||| ||| |||||||| |||||||| |  | ||||||||||| |||  | || || |||||||||||||||||||||    
T  11030820 aaataagagtttttcataggaaaaacgggttgcaaatcatttatagaaattccaagcactcgaagcaccgacgtctagagaaaagagtcatatagaatgt 11030721  T
Q  192 atgtaatctgatttgtcgaaccacct 217  Q
    |||||||||||||| |||||||||||    
T  11030720 atgtaatctgatttatcgaaccacct 11030695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 134 - 237
Target Start/End: Complemental strand, 23355573 - 23355471
Alignment:
Q  134 ttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctgatttgtcgaaccacctcttacattattgcatt 233  Q
    ||||||||||||||| ||| |||||||  |||| || ||||||||||||| | ||||||||||||||||||||||||||||||| |||||||| |||| |    
T  23355573 ttatagaattctagccctcaaagtaccgacatctagagaaaagagtcatacaaaatgtatgtaatctgatttgtcgaaccacct-ttacattaatgcaat 23355475  T
Q  234 gcaa 237  Q
    ||||    
T  23355474 gcaa 23355471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 114 - 237
Target Start/End: Original strand, 19709456 - 19709578
Alignment:
Q  114 aaaaacaggtcgcaaatcacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctgatttgtcgaacc 213  Q
    ||||| |||| |||||||||||||||||||||||||||  |||||||  | ||  | ||||||||||||| | |||||||||||| ||||||||||||||    
T  19709456 aaaaataggtggcaaatcacttatagaattctagcacttaaagtaccgtcgtccggagaaaagagtcatagataatgtatgtaatttgatttgtcgaacc 19709555  T
Q  214 acctcttacattattgcattgcaa 237  Q
    || | |||||||| |||| |||||    
T  19709556 acat-ttacattaatgcaatgcaa 19709578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 102 - 237
Target Start/End: Complemental strand, 5892748 - 5892615
Alignment:
Q  102 gttttccataggaaaaacaggtcgcaaatcacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctg 201  Q
    ||||| |||| ||||||| |||| ||||||| |||||||||||||||||||||||||||| | || |  |||||||||||   | |||||||||||| ||    
T  5892748 gtttttcatatgaaaaacgggtcacaaatcatttatagaattctagcactcgaagtaccaacgtctaaagaaaagagtca-ccaaaatgtatgtaatttg 5892650  T
Q  202 atttgtcgaaccacctcttacattattgcattgcaa 237  Q
    |||||| | ||||| | |||||||| |||| |||||    
T  5892649 atttgttgtaccacat-ttacattaatgcaatgcaa 5892615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 102 - 169
Target Start/End: Original strand, 22454661 - 22454728
Alignment:
Q  102 gttttccataggaaaaacaggtcgcaaatcacttatagaattctagcactcgaagtaccagcatcaag 169  Q
    ||||| |||| ||||||  |||||||||||||||||||||||||||||||| |||||||||| |||||    
T  22454661 gtttttcataagaaaaatgggtcgcaaatcacttatagaattctagcactcaaagtaccagcgtcaag 22454728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 141
Target Start/End: Complemental strand, 13110364 - 13110325
Alignment:
Q  102 gttttccataggaaaaacaggtcgcaaatcacttatagaa 141  Q
    |||||||||||| |||| ||||||||||||||||||||||    
T  13110364 gttttccatagggaaaataggtcgcaaatcacttatagaa 13110325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 141
Target Start/End: Complemental strand, 16600724 - 16600685
Alignment:
Q  102 gttttccataggaaaaacaggtcgcaaatcacttatagaa 141  Q
    |||||||||||||||||| ||| |||||||||||||||||    
T  16600724 gttttccataggaaaaacgggttgcaaatcacttatagaa 16600685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 217
Target Start/End: Original strand, 27123652 - 27123698
Alignment:
Q  171 gaaaagagtcatatagaatgtatgtaatctgatttgtcgaaccacct 217  Q
    ||||||||| ||| | ||||||||||||||||||| |||||||||||    
T  27123652 gaaaagagttatacataatgtatgtaatctgatttatcgaaccacct 27123698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 138
Target Start/End: Complemental strand, 10661857 - 10661813
Alignment:
Q  94 aaataagtgttttccataggaaaaacaggtcgcaaatcacttata 138  Q
    ||||||| ||||||||| || ||||||||||||||||||| ||||    
T  10661857 aaataagagttttccattgggaaaacaggtcgcaaatcacctata 10661813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 6e-38; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 103 - 231
Target Start/End: Original strand, 31532985 - 31533112
Alignment:
Q  103 ttttccataggaaaaacaggtcgcaaatcacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctga 202  Q
    ||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||| || || |  ||||||||||||| ||||||||||||||||||    
T  31532985 ttttccatatggaaaataggtcgcaaatcacttatagaattctagcactcgaagtaccggcgtctaaagaaaagagtcatagagaatgtatgtaatctga 31533084  T
Q  203 tttgtcgaaccacctcttacattattgca 231  Q
    ||||||||||||||| |||||||| ||||    
T  31533085 tttgtcgaaccacct-ttacattaatgca 31533112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 102 - 237
Target Start/End: Complemental strand, 24663705 - 24663571
Alignment:
Q  102 gttttccataggaaaaacaggtcgcaaatcacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctg 201  Q
    |||||||||| ||||||  ||||||||||   |||| ||||||||||||||||||||||||| || || || |||||||||| | |||||||||||||||    
T  24663705 gttttccatatgaaaaatgggtcgcaaattgtttattgaattctagcactcgaagtaccagcgtctagagataagagtcatacataatgtatgtaatctg 24663606  T
Q  202 atttgtcgaaccacctcttacattattgcattgcaa 237  Q
    |||||| ||||||||| |||||||| |||| |||||    
T  24663605 atttgttgaaccacct-ttacattaatgcaatgcaa 24663571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 114 - 231
Target Start/End: Original strand, 36499511 - 36499628
Alignment:
Q  114 aaaaacaggtcgcaaatcacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctgatttgtcgaacc 213  Q
    ||||| |||||| ||||||||||||||||||||  ||||||||||||||| || ||||||||  |||||||| |||| ||| |||||||||| |||||||    
T  36499511 aaaaataggtcgtaaatcacttatagaattctaaaactcgaagtaccagcgtctagtgaaaaaggtcatatataatggatgcaatctgatttatcgaacc 36499610  T
Q  214 acctcttacattattgca 231  Q
    |||| |||||||| ||||    
T  36499611 accttttacattaatgca 36499628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 131 - 226
Target Start/End: Complemental strand, 24309174 - 24309081
Alignment:
Q  131 cacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctgatttgtcgaaccacctcttacatta 226  Q
    ||||||||||||||||||||||||||||| ||| || || ||||||||||||| ||||| |||||||||||||||||||||| |||| ||||||||    
T  24309174 cacttatagaattctagcactcgaagtac-agcgtctagagaaaagagtcatacagaatatatgtaatctgatttgtcgaactacct-ttacatta 24309081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 131 - 226
Target Start/End: Original strand, 24364152 - 24364245
Alignment:
Q  131 cacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctgatttgtcgaaccacctcttacatta 226  Q
    ||||||||||||||||||||||||||||| ||| || || ||||||||||||| ||||| |||||||||||||||||||||| |||| ||||||||    
T  24364152 cacttatagaattctagcactcgaagtac-agcgtctagagaaaagagtcatacagaatatatgtaatctgatttgtcgaactacct-ttacatta 24364245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 114 - 214
Target Start/End: Complemental strand, 9423263 - 9423165
Alignment:
Q  114 aaaaacaggtcgcaaatcacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctgatttgtcgaacc 213  Q
    ||||| ||||||||||||| ||||| ||||||||||||||||||||| || || || ||||||||||| ||   ||||||||||  ||||||||||||||    
T  9423263 aaaaaaaggtcgcaaatcatttataaaattctagcactcgaagtaccggcgtctagagaaaagagtcacat--gatgtatgtaacttgatttgtcgaacc 9423166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 133 - 215
Target Start/End: Original strand, 30985526 - 30985606
Alignment:
Q  133 cttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctgatttgtcgaaccac 215  Q
    |||||||||||||||||||| |||||||||| |  | |||||||||||  | || ||||||||||||||||||||||||||||    
T  30985526 cttatagaattctagcactcaaagtaccagcgtttaatgaaaagagtc--acaggatgtatgtaatctgatttgtcgaaccac 30985606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 102 - 215
Target Start/End: Complemental strand, 10236203 - 10236092
Alignment:
Q  102 gttttccataggaaaaacaggtcgcaaatcacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctg 201  Q
    ||||| |||| ||||||  |||| ||||||| ||||| ||||||||||||| |||||||||| |  || ||||||||||| ||  ||||||||||||| |    
T  10236203 gtttttcataagaaaaatgggtcacaaatcatttatataattctagcactcaaagtaccagcgtttagagaaaagagtcacat--aatgtatgtaatcgg 10236106  T
Q  202 atttgtcgaaccac 215  Q
    |||||| |||||||    
T  10236105 atttgttgaaccac 10236092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 102 - 160
Target Start/End: Original strand, 28619256 - 28619314
Alignment:
Q  102 gttttccataggaaaaacaggtcgcaaatcacttatagaattctagcactcgaagtacc 160  Q
    ||||| |||| ||||||  ||||||||||||||||||||||||||||||| ||||||||    
T  28619256 gtttttcataagaaaaatgggtcgcaaatcacttatagaattctagcactagaagtacc 28619314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 102 - 231
Target Start/End: Complemental strand, 21390812 - 21390684
Alignment:
Q  102 gttttccataggaaaaacaggtcgcaaatcacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctg 201  Q
    ||||| |||| |||||| ||||| ||||| | ||||||||||| |||||||||||||||| | ||  | ||||||||||  | | ||| || ||||  ||    
T  21390812 gtttttcatatgaaaaataggtcacaaattatttatagaattcaagcactcgaagtaccaacttctggagaaaagagtccgacataatatacgtaagttg 21390713  T
Q  202 atttgtcgaaccacctcttacattattgca 231  Q
    |||||||||||||||| |||||||| ||||    
T  21390712 atttgtcgaaccacct-ttacattaatgca 21390684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 126 - 217
Target Start/End: Complemental strand, 22848146 - 22848055
Alignment:
Q  126 caaatcacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctgatttgtcgaaccacct 217  Q
    |||||||||||||||||||||||| | |||||||| |  || || |||||||||||   | ||| | ||||||||||||||||||| |||||    
T  22848146 caaatcacttatagaattctagcaatagaagtacctgtgtctagagaaaagagtcagtcataatttttgtaatctgatttgtcgaatcacct 22848055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 171 - 237
Target Start/End: Complemental strand, 22987812 - 22987747
Alignment:
Q  171 gaaaagagtcatatagaatgtatgtaatctgatttgtcgaaccacctcttacattattgcattgcaa 237  Q
    |||||| |||||| | ||||||||||||||||| ||||||||||||| |||||||| |||| |||||    
T  22987812 gaaaagtgtcatacaaaatgtatgtaatctgatatgtcgaaccacct-ttacattaatgcaatgcaa 22987747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 102 - 197
Target Start/End: Original strand, 23379374 - 23379472
Alignment:
Q  102 gttttccataggaaaaacaggtcgcaaatcacttat--agaattct--agcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaa 197  Q
    |||||||||||| ||||| ||||||||||||| |||  ||||||||  | |||||||||||| |||  | || ||||||||||||| |||||||||||||    
T  23379374 gttttccatagggaaaacgggtcgcaaatcacctatgcagaattctaaaacactcgaagtactagc-gcgagagaaaagagtcataaagaatgtatgtaa 23379472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 217
Target Start/End: Original strand, 19217974 - 19218098
Alignment:
Q  94 aaataagtgttttccataggaaaaacaggtcgcaaatcacttata-gaattct--agcactcgaagtaccagcatcaagtgaaaagagtcatatagaatg 190  Q
    |||||| ||||||||||||| ||||| ||||||||||||| ||||  ||||||  | ||||| ||||||| ||  | || |||||||| |||| ||||||    
T  19217974 aaataactgttttccatagggaaaacgggtcgcaaatcacctatacaaattctaaaacactcaaagtaccggc-gcgagagaaaagagccataaagaatg 19218072  T
Q  191 tatgtaatctgatttgtcgaaccacct 217  Q
    |||||||   |||||||||||||||||    
T  19218073 tatgtaa-aggatttgtcgaaccacct 19218098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 5e-35; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 94 - 217
Target Start/End: Original strand, 28760598 - 28760721
Alignment:
Q  94 aaataagtgttttccataggaaaaacaggtcgcaaatcacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtat 193  Q
    ||||||| ||||| |||| |||||||| | ||||||||| ||||| ||||||||||||||||||||| || || || |||||||||||||||||||||||    
T  28760598 aaataagagtttttcatatgaaaaacaagacgcaaatcatttataaaattctagcactcgaagtaccggcgtctagagaaaagagtcatatagaatgtat 28760697  T
Q  194 gtaatctgatttgtcgaaccacct 217  Q
    |||| |||||||||||||||||||    
T  28760698 gtaaactgatttgtcgaaccacct 28760721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 121 - 231
Target Start/End: Complemental strand, 17676698 - 17676589
Alignment:
Q  121 ggtcgcaaatcacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctgatttgtcgaaccacctctt 220  Q
    |||| |||||||||||||||||||||||||||||||||||||| || |  ||||||||||||| | ||||||||||||||||||||||||||||||| ||    
T  17676698 ggtcacaaatcacttatagaattctagcactcgaagtaccagcgtctaaagaaaagagtcatacaaaatgtatgtaatctgatttgtcgaaccacct-tt 17676600  T
Q  221 acattattgca 231  Q
    |||||| ||||    
T  17676599 acattaatgca 17676589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 119 - 231
Target Start/End: Complemental strand, 17636842 - 17636731
Alignment:
Q  119 caggtcgcaaatcacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctgatttgtcgaaccacctc 218  Q
    |||||| ||||||||||||||||||||||||||||||| |||||| || |  ||||||||||||| | |||||||||||||||||||||||||||||||     
T  17636842 caggtcacaaatcacttatagaattctagcactcgaagcaccagcgtctaaagaaaagagtcatacaaaatgtatgtaatctgatttgtcgaaccacct- 17636744  T
Q  219 ttacattattgca 231  Q
    |||||||| ||||    
T  17636743 ttacattaatgca 17636731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 102 - 216
Target Start/End: Original strand, 15437989 - 15438104
Alignment:
Q  102 gttttccataggaaaaacaggtcgcaaatcacttatagaa-ttctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatct 200  Q
    ||||| |||| |||||| ||||||||||||||| |||||| |||||||||||||||||||  | || || ||||||||||||| |||||||||||||| |    
T  15437989 gtttttcatatgaaaaataggtcgcaaatcactaatagaaattctagcactcgaagtaccgacgtctagagaaaagagtcatacagaatgtatgtaattt 15438088  T
Q  201 gatttgtcgaaccacc 216  Q
    ||||||||||||||||    
T  15438089 gatttgtcgaaccacc 15438104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 121 - 237
Target Start/End: Complemental strand, 2482154 - 2482039
Alignment:
Q  121 ggtcgcaaatcacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctgatttgtcgaaccacctctt 220  Q
    ||||||||||||||||||||||||||||||||||||||||    || || |||||||||||||  ||||||||||||| ||||||||||||||| || ||    
T  2482154 ggtcgcaaatcacttatagaattctagcactcgaagtaccgatgtctagagaaaagagtcatacggaatgtatgtaatttgatttgtcgaaccatct-tt 2482056  T
Q  221 acattattgcattgcaa 237  Q
    |||||| |||| |||||    
T  2482055 acattaatgcaatgcaa 2482039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 102 - 215
Target Start/End: Complemental strand, 32890548 - 32890435
Alignment:
Q  102 gttttccataggaaaaacaggtcgcaaatcacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctg 201  Q
    ||||||||||   |||| ||||||||||||||||||| ||||||||||||||||||||| || || || ||||| ||||||| | ||||||||||||||     
T  32890548 gttttccatatcgaaaataggtcgcaaatcacttataaaattctagcactcgaagtaccggcgtctagagaaaatagtcatacataatgtatgtaatctt 32890449  T
Q  202 atttgtcgaaccac 215  Q
    ||||||| ||||||    
T  32890448 atttgtcaaaccac 32890435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 122 - 217
Target Start/End: Original strand, 17161967 - 17162062
Alignment:
Q  122 gtcgcaaatcacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctgatttgtcgaaccacct 217  Q
    |||||| |||||||| ||||||||||||||| |||||| |||||| |  ||||||| ||||| |||||||||||||||||||||||||| ||||||    
T  17161967 gtcgcatatcacttagagaattctagcactcaaagtacgagcatccaaagaaaagaatcatacagaatgtatgtaatctgatttgtcgagccacct 17162062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 122 - 197
Target Start/End: Complemental strand, 19919535 - 19919462
Alignment:
Q  122 gtcgcaaatcacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaa 197  Q
    ||||||||||| |||||||||||||||||||||||||||||| || || ||||||||||| ||  |||||||||||    
T  19919535 gtcgcaaatcatttatagaattctagcactcgaagtaccagcgtctagagaaaagagtcacat--aatgtatgtaa 19919462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 102 - 237
Target Start/End: Original strand, 21498068 - 21498202
Alignment:
Q  102 gttttccataggaaaaacaggtcgcaaatcacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctg 201  Q
    ||||| |||| || ||| ||||||||||||| |||||||||||||||||| ||||||   || || |   | |||||||||| | || ||||||||||||    
T  21498068 gtttttcatatgagaaataggtcgcaaatcatttatagaattctagcacttgaagtattggcgtctataaacaagagtcatacataacgtatgtaatctg 21498167  T
Q  202 atttgtcgaaccacctcttacattattgcattgcaa 237  Q
    ||||||||||||| || |||||||| |||| |||||    
T  21498168 atttgtcgaacca-cttttacattaatgcaatgcaa 21498202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 103 - 212
Target Start/End: Original strand, 30999851 - 30999958
Alignment:
Q  103 ttttccataggaaaaacaggtcgcaaatcacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctga 202  Q
    |||| |||||||||||| |||| ||||||||||||| ||||| ||||||| ||||| || |||  || ||| ||| ||  || |||||||||||||||||    
T  30999851 tttttcataggaaaaacgggtcacaaatcacttatataattccagcactcaaagtatcaacatttagagaagagattc--atcgaatgtatgtaatctga 30999948  T
Q  203 tttgtcgaac 212  Q
    ||||||||||    
T  30999949 tttgtcgaac 30999958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 94 - 217
Target Start/End: Complemental strand, 26651070 - 26650945
Alignment:
Q  94 aaataagtgttttccataggaaaaacaggtcgcaaatcacttat--agaattct--agcactcgaagtaccagcatcaagtgaaaagagtcatatagaat 189  Q
    ||||||| |||||||||||| ||||||||||||||||||| |||  ||||||||  | ||||||||| ||| |   | || ||||||||||||| |||||    
T  26651070 aaataagagttttccatagggaaaacaggtcgcaaatcacctatacagaattctaaaacactcgaagcacc-gacgcgagagaaaagagtcataaagaat 26650972  T
Q  190 gtatgtaatctgatttgtcgaaccacct 217  Q
    ||||||||   |||||||||||||||||    
T  26650971 gtatgtaa-aggatttgtcgaaccacct 26650945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 103 - 217
Target Start/End: Complemental strand, 23389268 - 23389157
Alignment:
Q  103 ttttccataggaaaaacaggtcgcaaatcacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctga 202  Q
    |||| |||||||||||| |||| ||||||| ||||| ||||||||||||| ||||| | ||||| ||  |||| ||||  | |||||||||||||  | |    
T  23389268 tttttcataggaaaaacgggtcacaaatcatttataaaattctagcactcaaagtatcggcatctagataaaa-agtc--acagaatgtatgtaacttaa 23389172  T
Q  203 tttgtcgaaccacct 217  Q
    |||||||||||||||    
T  23389171 tttgtcgaaccacct 23389157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 217
Target Start/End: Original strand, 31404052 - 31404150
Alignment:
Q  121 ggtcgcaaatcacttatagaa-ttctag--cactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctgatttgtcgaaccacct 217  Q
    ||||||||||||||||| ||| |||||   ||||||||||||| ||  | || ||||||||| ||| |||||||||||||  ||||||||||||||||||    
T  31404052 ggtcgcaaatcacttattgaaattctaaaacactcgaagtaccggcg-cgagagaaaagagttatacagaatgtatgtaaaatgatttgtcgaaccacct 31404150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 141
Target Start/End: Complemental strand, 24544041 - 24544002
Alignment:
Q  102 gttttccataggaaaaacaggtcgcaaatcacttatagaa 141  Q
    |||||||||||||||||| |||| ||||||||||||||||    
T  24544041 gttttccataggaaaaacgggtcacaaatcacttatagaa 24544002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 19879032 - 19878996
Alignment:
Q  102 gttttccataggaaaaacaggtcgcaaatcacttata 138  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  19879032 gttttccataggaaaaacgggtcgcaaatcacctata 19878996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 5e-32; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 102 - 231
Target Start/End: Original strand, 25621056 - 25621182
Alignment:
Q  102 gttttccataggaaaaacaggtcgcaaatcacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctg 201  Q
    ||||| |||| |||||| ||||||||||||||||||| ||||||||||||||||||||| || || || ||||||||||  ||||||||||||||||||     
T  25621056 gtttttcatatgaaaaataggtcgcaaatcacttataaaattctagcactcgaagtaccggcgtctagagaaaagagtc--atagaatgtatgtaatcta 25621153  T
Q  202 atttgtcgaaccacctcttacattattgca 231  Q
    |||||||||||||||| |||||||| ||||    
T  25621154 atttgtcgaaccacct-ttacattaatgca 25621182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 121 - 237
Target Start/End: Original strand, 1545595 - 1545710
Alignment:
Q  121 ggtcgcaaatcacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctgatttgtcgaaccacctctt 220  Q
    |||||||||||||||||||||||| |||||| ||||||||| |||| || ||||||||||||| | ||||||| ||||||||||||||||||||| | ||    
T  1545595 ggtcgcaaatcacttatagaattcgagcacttgaagtaccaacatctagagaaaagagtcatacaaaatgtatataatctgatttgtcgaaccacat-tt 1545693  T
Q  221 acattattgcattgcaa 237  Q
    |||||| |||| |||||    
T  1545694 acattaatgcaatgcaa 1545710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 102 - 214
Target Start/End: Original strand, 4978780 - 4978893
Alignment:
Q  102 gttttccataggaaaaacaggtcgcaaatcacttatagaa-ttctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatct 200  Q
    ||||| |||| |||||| ||||||||||| |||||||||| ||||||||||||||||||| || || ||  |||||||||||| | |||| |||||||||    
T  4978780 gtttttcatatgaaaaataggtcgcaaattacttatagaaattctagcactcgaagtaccggcgtctagataaaagagtcatacataatgcatgtaatct 4978879  T
Q  201 gatttgtcgaacca 214  Q
    ||||||||||||||    
T  4978880 gatttgtcgaacca 4978893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 102 - 231
Target Start/End: Original strand, 7524694 - 7524822
Alignment:
Q  102 gttttccataggaaaaacaggtcgcaaatcacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctg 201  Q
    ||||| |||| | |||| ||||| |||||||||||||||||| |||||||  |||||||||| |   | ||||||||||||| | ||| |||||||||||    
T  7524694 gtttttcatatggaaaataggtcacaaatcacttatagaattatagcacttcaagtaccagcgtatcgagaaaagagtcatacataatttatgtaatctg 7524793  T
Q  202 atttgtcgaaccacctcttacattattgca 231  Q
    |||||||||||||||| |||||||| ||||    
T  7524794 atttgtcgaaccacct-ttacattaatgca 7524822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 125 - 214
Target Start/End: Original strand, 7947991 - 7948078
Alignment:
Q  125 gcaaatcacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctgatttgtcgaacca 214  Q
    |||||||||||||||||||||||||| |||||||||||  || ||  |||||||||  | | |||||||||||||||||||||| |||||    
T  7947991 gcaaatcacttatagaattctagcacccgaagtaccagtgtccagataaaagagtc--acaaaatgtatgtaatctgatttgtcaaacca 7948078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 114 - 214
Target Start/End: Original strand, 11993877 - 11993975
Alignment:
Q  114 aaaaacaggtcgcaaatcacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctgatttgtcgaacc 213  Q
    ||||| ||||||||||||| ||||| ||||||||| ||||||||||| || || || ||||||||||| ||  |||||||||||  ||||||||| ||||    
T  11993877 aaaaagaggtcgcaaatcatttataaaattctagcgctcgaagtaccggcgtctagagaaaagagtcacat--aatgtatgtaacttgatttgtcaaacc 11993974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 121 - 215
Target Start/End: Complemental strand, 12469061 - 12468965
Alignment:
Q  121 ggtcgcaaatcacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatata--gaatgtatgtaatctgatttgtcgaaccac 215  Q
    |||||||||||||||||||||||||||||||| ||||  |||| || || ||||| ||||| | |    ||||||||||||||||||||||||||||    
T  12469061 ggtcgcaaatcacttatagaattctagcactcaaagtgtcagcgtctagagaaaaaagtcacagaatttatgtatgtaatctgatttgtcgaaccac 12468965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 146 - 217
Target Start/End: Original strand, 9022536 - 9022607
Alignment:
Q  146 agcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctgatttgtcgaaccacct 217  Q
    |||||||||||||||  | || || | ||||||||||| ||||||||||||||||||||| |||||||||||    
T  9022536 agcactcgaagtaccgacgtctagagtaaagagtcatacagaatgtatgtaatctgatttctcgaaccacct 9022607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 146 - 217
Target Start/End: Complemental strand, 41132035 - 41131964
Alignment:
Q  146 agcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctgatttgtcgaaccacct 217  Q
    ||||||||||||| || | || |  ||||||||||||| | |||||||||||||||||||||||||||||||    
T  41132035 agcactcgaagtatcaacgtctatagaaaagagtcatacaaaatgtatgtaatctgatttgtcgaaccacct 41131964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 207
Target Start/End: Complemental strand, 12331098 - 12331010
Alignment:
Q  121 ggtcgcaaatcacttatagaattct--agcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctgatttgt 207  Q
    |||||||||||| ||||||||||||  | ||||| || |||| || || || |||| |||| ||| ||||||||||||| |||||||||    
T  12331098 ggtcgcaaatcatttatagaattctacaacactcaaactaccggcgtctagggaaacgagttatacagaatgtatgtaaactgatttgt 12331010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 231
Target Start/End: Original strand, 5531758 - 5531817
Alignment:
Q  171 gaaaagagtcatatagaatgtatgtaatctgatttgtcgaaccacctcttacattattgca 231  Q
    ||||||||| ||| | ||||||||||||||| |||||| |||||||| |||||||| ||||    
T  5531758 gaaaagagttatacaaaatgtatgtaatctggtttgtctaaccacct-ttacattaatgca 5531817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 28037248 - 28037212
Alignment:
Q  171 gaaaagagtcatatagaatgtatgtaatctgatttgt 207  Q
    |||||||||||||||  ||||||||||||||||||||    
T  28037248 gaaaagagtcatataagatgtatgtaatctgatttgt 28037212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 5e-32; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 123 - 237
Target Start/End: Complemental strand, 24925003 - 24924890
Alignment:
Q  123 tcgcaaatcacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctgatttgtcgaaccacctcttac 222  Q
    |||||||||||||||||||||||||||||||||||||| || |  || ||||||||||||| | ||||||||||||||||||||||||||||||| ||||    
T  24925003 tcgcaaatcacttatagaattctagcactcgaagtaccggcgtttagagaaaagagtcatacataatgtatgtaatctgatttgtcgaaccacct-ttac 24924905  T
Q  223 attattgcattgcaa 237  Q
    |||| |||| |||||    
T  24924904 attaatgcaatgcaa 24924890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 102 - 217
Target Start/End: Original strand, 26654078 - 26654193
Alignment:
Q  102 gttttccataggaaaaacaggtcgcaaatcacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctg 201  Q
    ||||| |||| |||||| || ||||||||||||||||||||| ||||||||||||||||    |  || ||||||||||||| | |||||||||||| ||    
T  26654078 gtttttcatatgaaaaatagatcgcaaatcacttatagaattttagcactcgaagtaccgatgtatagagaaaagagtcatacataatgtatgtaatatg 26654177  T
Q  202 atttgtcgaaccacct 217  Q
    ||||||||||||||||    
T  26654178 atttgtcgaaccacct 26654193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 121 - 226
Target Start/End: Complemental strand, 16288878 - 16288774
Alignment:
Q  121 ggtcgcaaatcacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctgatttgtcgaaccacctctt 220  Q
    |||| |||||||||| ||||||||||||||||||||||||||  |  || ||||||||| ||| | ||||||||||||||||||||| ||||||||| ||    
T  16288878 ggtcacaaatcacttttagaattctagcactcgaagtaccagtgtttagagaaaagagttatacaaaatgtatgtaatctgatttgttgaaccacct-tt 16288780  T
Q  221 acatta 226  Q
    ||||||    
T  16288779 acatta 16288774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 102 - 217
Target Start/End: Complemental strand, 12424914 - 12424801
Alignment:
Q  102 gttttccataggaaaaacaggtcgcaaatcacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctg 201  Q
    ||||| |||||||||||| ||||||||||||  |||||||||||| ||||||||||| | || || || ||||||||||||| | ||||||||||| |      
T  12424914 gtttttcataggaaaaacgggtcgcaaatca--tatagaattctaacactcgaagtatcggcgtctagagaaaagagtcatacaaaatgtatgtaaacca 12424817  T
Q  202 atttgtcgaaccacct 217  Q
    ||||||||||||||||    
T  12424816 atttgtcgaaccacct 12424801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 102 - 211
Target Start/End: Original strand, 16928563 - 16928674
Alignment:
Q  102 gttttccataggaaaaacaggtcgcaaatcacttatagaa-ttcta-gcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatc 199  Q
    |||||||||| | |||| |||||||||||| ||||||||| ||||| |||||||| |||||  | || || ||||||||||||| | |||||||||||||    
T  16928563 gttttccatatggaaaataggtcgcaaatcccttatagaaattctaagcactcgaggtaccgacgtctagagaaaagagtcatagataatgtatgtaatc 16928662  T
Q  200 tgatttgtcgaa 211  Q
    ||||||||||||    
T  16928663 tgatttgtcgaa 16928674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 102 - 181
Target Start/End: Complemental strand, 16647205 - 16647126
Alignment:
Q  102 gttttccataggaaaaacaggtcgcaaatcacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtca 181  Q
    ||||| |||| ||||||  |||||||||||||||||||||||||||||||| ||||||| || || || |||||||||||    
T  16647205 gtttttcataagaaaaaagggtcgcaaatcacttatagaattctagcactcaaagtacccgcgtctagagaaaagagtca 16647126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 120 - 237
Target Start/End: Complemental strand, 12568268 - 12568151
Alignment:
Q  120 aggtcgcaaatcacttatagaa-ttctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctgatttgtcgaaccacctc 218  Q
    ||||||||||||  |||||||| ||||||||||||||||||| || ||  | ||||||||||||| | |||||||||||||||||| | | ||| ||||     
T  12568268 aggtcgcaaatcttttatagaaattctagcactcgaagtaccggcgtctcgagaaaagagtcatacataatgtatgtaatctgattagccaaactacct- 12568170  T
Q  219 ttacattattgcattgcaa 237  Q
    |||||||| |||| |||||    
T  12568169 ttacattaatgcaatgcaa 12568151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 102 - 217
Target Start/End: Original strand, 9409154 - 9409271
Alignment:
Q  102 gttttccataggaaaaacaggtcgcaaatcact--tatagaattct--agcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaa 197  Q
    ||||||||||||  |||| ||||||||||||||  |||||||||||  | ||||||||||||| ||  |||| ||||| ||| ||| |||||||||||||    
T  9409154 gttttccataggggaaacgggtcgcaaatcacttatatagaattctaaaacactcgaagtaccggc-gcaagagaaaaaagttataaagaatgtatgtaa 9409252  T
Q  198 tctgatttgtcgaaccacct 217  Q
       |||||||||||||||||    
T  9409253 -aggatttgtcgaaccacct 9409271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 198
Target Start/End: Complemental strand, 41457644 - 41457566
Alignment:
Q  122 gtcgcaaatcacttatagaa-ttcta-gcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaat 198  Q
    ||||||||| | |||||||| ||||| |||||||||||| |||| || || ||||||||||||| | ||||||||||||    
T  41457644 gtcgcaaattatttatagaaattctaagcactcgaagtatcagcgtctagagaaaagagtcatacataatgtatgtaat 41457566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 8e-28; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 102 - 237
Target Start/End: Original strand, 27717914 - 27718048
Alignment:
Q  102 gttttccataggaaaaacaggtcgcaaatcacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctg 201  Q
    ||||| |||| |||||| ||||| ||||||||||||||||||||||||||||||||||| || |  ||   ||||||| ||| |||||||||||||||||    
T  27717914 gtttttcatatgaaaaataggtcccaaatcacttatagaattctagcactcgaagtaccggcgtttagaagaaagagttatacagaatgtatgtaatctg 27718013  T
Q  202 atttgtcgaaccacctcttacattattgcattgcaa 237  Q
    |||| ||||||||||| |||||||| |||| |||||    
T  27718014 atttatcgaaccacct-ttacattaatgcaatgcaa 27718048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 121 - 237
Target Start/End: Original strand, 17439084 - 17439199
Alignment:
Q  121 ggtcgcaaatcacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctgatttgtcgaaccacctctt 220  Q
    |||||||||| | |||||||||||||| ||||||||||||||| || || ||||||||||||||| ||| |||||||||||||||||||||| || | ||    
T  17439084 ggtcgcaaattagttatagaattctaggactcgaagtaccagcgtccagagaaaagagtcatataaaatatatgtaatctgatttgtcgaactacat-tt 17439182  T
Q  221 acattattgcattgcaa 237  Q
    |||||| |||| |||||    
T  17439183 acattaatgcaatgcaa 17439199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 110 - 215
Target Start/End: Original strand, 53589067 - 53589175
Alignment:
Q  110 taggaaaaacaggtcgcaaatcacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaa---tgtatgtaatctgatttg 206  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||| | || || |||||| |||||| | ||   ||||||||||||||||||    
T  53589067 taggaaaaaatggtcgcaaatcacttatagaattctagcactcgaagtaccaacgtccagagaaaagtgtcatacaaaatgttgtatgtaatctgatttg 53589166  T
Q  207 tcgaaccac 215  Q
    |||||||||    
T  53589167 tcgaaccac 53589175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 102 - 226
Target Start/End: Complemental strand, 12145155 - 12145032
Alignment:
Q  102 gttttccataggaaaaacaggtcgcaaatcacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctg 201  Q
    ||||| |||| |||||| | ||||||||||||||||||||||||||||||| ||||| | ||||| ||  |||||||||||| | ||||||||||||||     
T  12145155 gtttttcatatgaaaaatatgtcgcaaatcacttatagaattctagcactcaaagtatcggcatccagataaaagagtcatacaaaatgtatgtaatcta 12145056  T
Q  202 atttgtcgaaccacctcttacatta 226  Q
    |||||||  ||||||| ||||||||    
T  12145055 atttgtcataccacct-ttacatta 12145032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 122 - 237
Target Start/End: Complemental strand, 15987700 - 15987586
Alignment:
Q  122 gtcgcaaatcacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctgatttgtcgaaccacctctta 221  Q
    |||| |||||||||| ||||||||||||||| || ||| ||| || || ||||| ||||||| | ||||||||||||||||||||||||||||| | |||    
T  15987700 gtcgtaaatcacttaaagaattctagcactcaaaatactagcgtcgagagaaaaaagtcatacaaaatgtatgtaatctgatttgtcgaaccacat-tta 15987602  T
Q  222 cattattgcattgcaa 237  Q
    ||||| |||| |||||    
T  15987601 cattaatgcaatgcaa 15987586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 114 - 214
Target Start/End: Original strand, 44450826 - 44450924
Alignment:
Q  114 aaaaacaggtcgcaaatcacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctgatttgtcgaacc 213  Q
    ||||| ||||||||||||| ||||| ||||||||||||||||||||| || || || ||||||||||| ||  |||||||||||  ||||||||||||||    
T  44450826 aaaaagaggtcgcaaatcatttataaaattctagcactcgaagtaccggcgtctagagaaaagagtcacat--aatgtatgtaacttgatttgtcgaacc 44450923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 102 - 217
Target Start/End: Complemental strand, 48896193 - 48896078
Alignment:
Q  102 gttttccataggaaaaacaggtcgcaaatcacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctg 201  Q
    ||||| ||||| |||| || ||| ||||||| |||||||||| |||||||||||| |||  | || || ||||||||||||| | ||||||||||| |||    
T  48896193 gtttttcatagaaaaatcatgtcacaaatcatttatagaattatagcactcgaagcaccgacgtctagagaaaagagtcatacataatgtatgtaaactg 48896094  T
Q  202 atttgtcgaaccacct 217  Q
     |||||||||||||||    
T  48896093 gtttgtcgaaccacct 48896078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 121 - 217
Target Start/End: Complemental strand, 15759723 - 15759625
Alignment:
Q  121 ggtcgcaaatcacttatagaa-ttctag-cactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctgatttgtcgaaccacct 217  Q
    |||||||||||| |||||||| |||||  |||| |||||||| || || || ||||||||||||||||| |||||||||||||||||||| ||||||||    
T  15759723 ggtcgcaaatcatttatagaaattctaaacactagaagtaccggcgtctagagaaaagagtcatatagattgtatgtaatctgatttgtcaaaccacct 15759625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 102 - 214
Target Start/End: Complemental strand, 25321307 - 25321197
Alignment:
Q  102 gttttccataggaaaaacaggtcgcaaatcacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctg 201  Q
    ||||| |||| |||||| || |||  |||||||||||||||||||||| || |||||||||| || || ||||||||||  | | ||| |||||||||||    
T  25321307 gttttacataagaaaaaaagctcgttaatcacttatagaattctagcattcaaagtaccagcgtctagagaaaagagtc--acaaaatatatgtaatctg 25321210  T
Q  202 atttgtcgaacca 214  Q
    ||||||| |||||    
T  25321209 atttgtcaaacca 25321197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 102 - 217
Target Start/End: Complemental strand, 26011054 - 26010937
Alignment:
Q  102 gttttccataggaaaaacaggtcgcaaatcacttata--gaattct--agcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaa 197  Q
    |||||||||||| ||||||||||||||||||| ||||  |||||||  | ||||||||||||| ||  | || ||| ||||||||| |||||||||||||    
T  26011054 gttttccatagggaaaacaggtcgcaaatcacctataccgaattctaaaacactcgaagtaccggc-gcgagagaatagagtcataaagaatgtatgtaa 26010956  T
Q  198 tctgatttgtcgaaccacct 217  Q
      ||||||||||||||||||    
T  26010955 -atgatttgtcgaaccacct 26010937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 102 - 214
Target Start/End: Original strand, 14132061 - 14132173
Alignment:
Q  102 gttttccataggaaaaacaggtcgcaaatcacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctg 201  Q
    ||||| |||| | |||| |||| ||||||||||||||||||||||||| | ||||||    | || || ||||||||||||| | |||||||||||||||    
T  14132061 gtttttcatacggaaaagaggttgcaaatcacttatagaattctagcagttgaagtattttcgtctagagaaaagagtcatacaaaatgtatgtaatctg 14132160  T
Q  202 atttgtcgaacca 214  Q
    |||| | ||||||    
T  14132161 atttattgaacca 14132173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 120 - 217
Target Start/End: Original strand, 4026350 - 4026445
Alignment:
Q  120 aggtcgcaaatcacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctgatttgtcgaaccacct 217  Q
    ||||| |||||||| ||||||||||||||||   |||||||||| || ||  |||||||||| ||  ||| |||||||||| ||||||||||||||||    
T  4026350 aggtcccaaatcacatatagaattctagcaccaaaagtaccagcgtctagaaaaaagagtcacat--aatatatgtaatctaatttgtcgaaccacct 4026445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 120 - 231
Target Start/End: Original strand, 7536083 - 7536198
Alignment:
Q  120 aggtcgcaaatcacttatag-aattctagcactcgaa----gtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctgatttgtcgaacca 214  Q
    |||||||||||||||||||| |||||||| |||||||    ||||| || || |  ||||| ||||||| | |||||||||||| |||||||||||| ||    
T  7536083 aggtcgcaaatcacttatagaaattctagtactcgaagtacgtaccggcgtctaaagaaaatagtcatacaaaatgtatgtaatttgatttgtcgaatca 7536182  T
Q  215 cctcttacattattgca 231  Q
    ||| |||||||| ||||    
T  7536183 cct-ttacattaatgca 7536198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 160
Target Start/End: Original strand, 9101640 - 9101699
Alignment:
Q  102 gttttccataggaaaaac-aggtcgcaaatcacttatagaattctagcactcgaagtacc 160  Q
    ||||| |||| ||||||| | ||||||||||||||||| || ||||||||||||||||||    
T  9101640 gtttttcatatgaaaaactatgtcgcaaatcacttatataactctagcactcgaagtacc 9101699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 217
Target Start/End: Complemental strand, 17132854 - 17132739
Alignment:
Q  102 gttttccataggaaaaacaggtcgcaaatcact--tatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatc 199  Q
    ||||| |||||||||||| | || ||||||| |  |||||||||||||||||  |||||||||| |  ||  |||| ||||| ||  |||||||||||      
T  17132854 gtttttcataggaaaaacggttcacaaatcattattatagaattctagcactgaaagtaccagcgtttagataaaaaagtcacat--aatgtatgtaact 17132757  T
Q  200 tgatttgtcgaaccacct 217  Q
    ||||||||||||||||||    
T  17132756 tgatttgtcgaaccacct 17132739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 207
Target Start/End: Complemental strand, 13409970 - 13409882
Alignment:
Q  121 ggtcgcaaatcacttatagaattct--agcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctgatttgt 207  Q
    |||||||||||| ||||||||||||  | ||||| || ||||||| || || |||| |||| ||| | ||||||||||| |||||||||    
T  13409970 ggtcgcaaatcatttatagaattctacaacactcaaactaccagcgtctagggaaacgagttatacaaaatgtatgtaaactgatttgt 13409882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 215
Target Start/End: Original strand, 45279949 - 45279977
Alignment:
Q  187 aatgtatgtaatctgatttgtcgaaccac 215  Q
    |||||||||||||||||||||||||||||    
T  45279949 aatgtatgtaatctgatttgtcgaaccac 45279977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 8e-28; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 102 - 217
Target Start/End: Complemental strand, 25018801 - 25018686
Alignment:
Q  102 gttttccataggaaaaacaggtcgcaaatcacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctg 201  Q
    ||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||| |||| || ||  |||||||||||| | ||||||||||| ||     
T  25018801 gtttttcatatgaaaaacaggtcgcaaatcacttatagaattctggcactcgaagtatcagcgtctagaaaaaagagtcatacaaaatgtatgtaaacta 25018702  T
Q  202 atttgtcgaaccacct 217  Q
    ||||| ||||||||||    
T  25018701 atttgccgaaccacct 25018686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 125 - 217
Target Start/End: Complemental strand, 23455286 - 23455194
Alignment:
Q  125 gcaaatcacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctgatttgtcgaaccacct 217  Q
    ||||||| ||||||||||||||||||||||||||||| | ||  | ||||||||||||| | |||||||||||| ||||||||||||||||||    
T  23455286 gcaaatctcttatagaattctagcactcgaagtaccatcgtcttgagaaaagagtcatacaaaatgtatgtaatatgatttgtcgaaccacct 23455194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 122 - 237
Target Start/End: Original strand, 33379319 - 33379433
Alignment:
Q  122 gtcgcaaatcacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctgatttgtcgaaccacctctta 221  Q
    ||||||||||||||||| |||||||| ||||||||||||||| |  || ||||||||| ||||| |||| ||||||||||||||||| ||||| || |||    
T  33379319 gtcgcaaatcacttataaaattctagtactcgaagtaccagcgtatagagaaaagagttatataaaatgaatgtaatctgatttgtcaaaccagct-tta 33379417  T
Q  222 cattattgcattgcaa 237  Q
    ||||| |||| |||||    
T  33379418 cattaatgcaatgcaa 33379433  T

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Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 125 - 214
Target Start/End: Original strand, 24633279 - 24633368
Alignment:
Q  125 gcaaatcacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctgatttgtcgaacca 214  Q
    ||||||||||||| | ||||||||||| ||||||||||| || || | ||||||||||| | ||||||||||||||||||||| ||||||    
T  24633279 gcaaatcacttatggtattctagcacttgaagtaccagcgtctagaggaaagagtcatacataatgtatgtaatctgatttgtagaacca 24633368  T

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Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 109 - 217
Target Start/End: Complemental strand, 11821974 - 11821868
Alignment:
Q  109 ataggaaaaacaggtcgcaaatcacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctgatttgtc 208  Q
    ||||||||||| |||| ||||| | |||||||||||||||| ||||||||||||| || || ||||||||||  | | |||||||||||  |||||| ||    
T  11821974 ataggaaaaacgggtcacaaattatttatagaattctagcattcgaagtaccagcgtctagagaaaagagtc--acaaaatgtatgtaacttgatttatc 11821877  T
Q  209 gaaccacct 217  Q
    |||||||||    
T  11821876 gaaccacct 11821868  T

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Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 102 - 217
Target Start/End: Original strand, 36571656 - 36571772
Alignment:
Q  102 gttttccataggaaaaacaggtcgcaaatcacttatag-aattct--agcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaat 198  Q
    |||||||||||||||||  ||||||||||||||||||| ||||||  | |||||||||||| |||| | || ||||||||| ||| | |||||||||||     
T  36571656 gttttccataggaaaaatgggtcgcaaatcacttatagaaattctacaacactcgaagtactagca-cgagagaaaagagttatacataatgtatgtaa- 36571753  T
Q  199 ctgatttgtcgaaccacct 217  Q
      |||||||||||||||||    
T  36571754 aggatttgtcgaaccacct 36571772  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 120 - 217
Target Start/End: Complemental strand, 13963005 - 13962910
Alignment:
Q  120 aggtcgcaaatcacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctgatttgtcgaaccacct 217  Q
    ||||| |||||||| ||||||||||||||||   |||||||||| || ||  |||||||||| ||  ||| |||||||| | ||||||||||||||||    
T  13963005 aggtcccaaatcacatatagaattctagcaccaaaagtaccagcgtctagataaaagagtcacat--aatatatgtaatttaatttgtcgaaccacct 13962910  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 141
Target Start/End: Original strand, 13202065 - 13202104
Alignment:
Q  102 gttttccataggaaaaacaggtcgcaaatcacttatagaa 141  Q
    ||||| ||||||||||||| ||||||||||||||||||||    
T  13202065 gtttttcataggaaaaacatgtcgcaaatcacttatagaa 13202104  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 159
Target Start/End: Complemental strand, 13966568 - 13966513
Alignment:
Q  103 ttttccataggaaaaacaggtcgcaaatcacttatagaattctagcactcgaagtac 159  Q
    |||| |||| ||||||| ||| ||||||||||||||||||||||| |||| ||||||    
T  13966568 tttttcataagaaaaac-ggttgcaaatcacttatagaattctagaactcaaagtac 13966513  T

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Target: scaffold0024 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 102 - 231
Target Start/End: Original strand, 38848 - 38977
Alignment:
Q  102 gttttccataggaaaaacaggtcgcaaatcacttatagaa-ttctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatct 200  Q
    |||||||||| | |||| ||||| |||||||||||||||| || ||||||||||| |||| |  || || ||||||||||||||| ||||||||||||||    
T  38848 gttttccatatggaaaataggtcacaaatcacttatagaaattatagcactcgaaatacctgtgtctagagaaaagagtcatataaaatgtatgtaatct 38947  T
Q  201 gatttgtcgaaccacctcttacattattgca 231  Q
    ||||||||||||||||| |||||||| ||||    
T  38948 gatttgtcgaaccacct-ttacattaatgca 38977  T

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Target: scaffold0431 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 102 - 217
Target Start/End: Original strand, 5061 - 5174
Alignment:
Q  102 gttttccataggaaaaacaggtcgcaaatcacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctg 201  Q
    ||||| |||||||||||| ||||||||||||  |||||||||||| ||||||||||| | || || || ||||||||||||| | ||||||||||| |      
T  5061 gtttttcataggaaaaacgggtcgcaaatca--tatagaattctaacactcgaagtatcggcgtctagagaaaagagtcatacaaaatgtatgtaaacca 5158  T
Q  202 atttgtcgaaccacct 217  Q
    ||||||||||||||||    
T  5159 atttgtcgaaccacct 5174  T

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Target: scaffold0320 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 102 - 226
Target Start/End: Complemental strand, 6547 - 6423
Alignment:
Q  102 gttttccataggaaaaacaggtcgcaaatcacttatagaa-ttctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatct 200  Q
    ||||| |||| |||||| |||||||||||||||||||||| |||||| | ||||||| ||  | || || ||||| ||||||| | ||||||||||||||    
T  6547 gtttttcatatgaaaaataggtcgcaaatcacttatagaaattctagaattcgaagtgccgacgtctagagaaaatagtcatacataatgtatgtaatct 6448  T
Q  201 gatttgtcgaaccacctcttacatta 226  Q
    ||||||||||||| ||| ||||||||    
T  6447 gatttgtcgaaccgcct-ttacatta 6423  T

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Target: scaffold0167 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 102 - 226
Target Start/End: Original strand, 10237 - 10361
Alignment:
Q  102 gttttccataggaaaaacaggtcgcaaatcacttatagaa-ttctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatct 200  Q
    ||||| |||| |||||| |||||||||||||||||||||| ||| || |||||||||| |  | |  || ||||||||||||| | ||||||||||||||    
T  10237 gtttttcatatgaaaaataggtcgcaaatcacttatagaaattccagaactcgaagtatcgacgtttagagaaaagagtcatacataatgtatgtaatct 10336  T
Q  201 gatttgtcgaaccacctcttacatta 226  Q
    |||||||| |||||||| ||||||||    
T  10337 gatttgtcaaaccacct-ttacatta 10361  T

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Target: scaffold0040 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 102 - 217
Target Start/End: Original strand, 26862 - 26979
Alignment:
Q  102 gttttccataggaaaaacaggtcgcaaatcacttatagaa-ttcta-gcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatc 199  Q
    |||||||||| | ||||  |||||||||||| |||||||| ||||| ||||||||||||||  | || || ||||||||||||| | |||||||||||||    
T  26862 gttttccatatggaaaatgggtcgcaaatcatttatagaaattctaagcactcgaagtaccgtcgtctagagaaaagagtcatacataatgtatgtaatc 26961  T
Q  200 tgatttgtcgaaccacct 217  Q
    | ||||||||||||||||    
T  26962 taatttgtcgaaccacct 26979  T

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Target: scaffold0039 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 134 - 231
Target Start/End: Complemental strand, 48365 - 48269
Alignment:
Q  134 ttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctgatttgtcgaaccacctcttacattattgca 231  Q
    ||||| |||||||||| ||||||||||  | || || ||| ||||||||| |||||||||||||||||||||||||||||| || |||||||||||||    
T  48365 ttataaaattctagcattcgaagtaccgacgtctagagaatagagtcatacagaatgtatgtaatctgatttgtcgaacca-cttttacattattgca 48269  T

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Target: scaffold0039; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 33239 - 33317
Alignment:
Q  137 tagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctgatttgtcgaaccac 215  Q
    ||||||| |||||||||||||||| || || || ||||||||||||| | |||||||||||| ||| ||||||||||||    
T  33239 tagaattttagcactcgaagtaccggcgtctagagaaaagagtcatacataatgtatgtaatatgaattgtcgaaccac 33317  T

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Target: scaffold1024 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold1024
Description:

Target: scaffold1024; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 125 - 217
Target Start/End: Original strand, 2929 - 3021
Alignment:
Q  125 gcaaatcacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctgatttgtcgaaccacct 217  Q
    ||||||| || |||||||||||||||||||||||||| | ||  | ||||||||||||| | ||| ||| |||| ||||||||||||||||||    
T  2929 gcaaatctctcatagaattctagcactcgaagtaccatcgtcttgagaaaagagtcatacaaaatatatttaatatgatttgtcgaaccacct 3021  T

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Target: scaffold0148 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 102 - 207
Target Start/End: Complemental strand, 23158 - 23055
Alignment:
Q  102 gttttccataggaaaaacaggtcgcaaatcacttatagaattctagcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaatctg 201  Q
    ||||| |||| |||||||| ||| ||||||| |||||||||||| |||||| |||||||||| |  || ||||||||||  | | ||||||| |||||||    
T  23158 gtttttcatatgaaaaacaagtcacaaatcatttatagaattctcgcactcaaagtaccagcgtttagagaaaagagtc--acaaaatgtatataatctg 23061  T
Q  202 atttgt 207  Q
    ||||||    
T  23060 atttgt 23055  T

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Target: scaffold0016 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 102 - 197
Target Start/End: Complemental strand, 13091 - 12993
Alignment:
Q  102 gttttccataggaaaaacaggtcgcaaatcacttat--agaattct--agcactcgaagtaccagcatcaagtgaaaagagtcatatagaatgtatgtaa 197  Q
    |||||||||||| ||||| ||||||||||||| |||  ||||||||  | |||||||||||| |||  | || ||||||||||||| |||||||||||||    
T  13091 gttttccatagggaaaacgggtcgcaaatcacctatgcagaattctaaaacactcgaagtactagc-gcgagagaaaagagtcataaagaatgtatgtaa 12993  T

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