View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3546_low_21 (Length: 429)
Name: NF3546_low_21
Description: NF3546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3546_low_21 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 147 - 419
Target Start/End: Original strand, 8134852 - 8135128
Alignment:
| Q |
147 |
gtgtcgatacgtcagtgttgtatacaatgtttgtttatgtcaatatcatgtgtggtgtttgatatcattgatcgattagaaatagtgtttgattatatgt |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
8134852 |
gtgtcgatacgtcagtgttgtatacaatgtttgtttatgtcaatatcatgtgtggtgtttgatatcattgattgattagaaatagtgtttgattatatgt |
8134951 |
T |
|
| Q |
247 |
tgcactgaaatttaagattgaaaatgtgtttggtgtccgaggcatgctaatgttggacactaacacatcacccacacatgtacattcaatcgc----nnn |
342 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8134952 |
tgcactgaaatttcagattgaaaatgtgtttggcgtccaaggcatgctaatgttggacactaacacatcacccacacatgtacattcaatcgcttttttt |
8135051 |
T |
|
| Q |
343 |
nnnnnncttaaattattagaagtgtatatacgtatttatcaatgttgtgtctgatatatgtgtcgacgtgtcctatg |
419 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
8135052 |
ttttctcttaaattattagaagtgtatatgcgtatgtatcaatgttgtgtctgatatacgtgtcgacgtgtcctatg |
8135128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 8134708 - 8134789
Alignment:
| Q |
3 |
ttctttctcatgtacgtgtcggcatgtcctatgtagctttaaaactttagattgaagacatgtttggtgtgcgacatgacac |
84 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
8134708 |
ttctttctcatgtacgtgtcggcatgtcctatgtagctttgaaactttagattgatgacatgtttggtgtgcgacatgacac |
8134789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 8135108 - 8135187
Alignment:
| Q |
15 |
tacgtgtcggcatgtcctatgtagctttaaaactttagattgaagacatgtttggtgtgcgacatgacaccaaaacatgt |
94 |
Q |
| |
|
||||||||| | |||||||||||||| |||||||||||||||||| ||| | | | ||| ||||||||||||||||| |
|
|
| T |
8135108 |
tacgtgtcgacgtgtcctatgtagctccgaaactttagattgaagacgtgtctagcatccgatatgacaccaaaacatgt |
8135187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 328
Target Start/End: Original strand, 8134582 - 8134648
Alignment:
| Q |
262 |
gattgaaaatgtgtttggtgtccgaggcatgctaatgttggacactaacacatcacccacacatgta |
328 |
Q |
| |
|
||||||| || ||| ||||||||||| ||||||| ||||||| ||||||||| || |||| |||||| |
|
|
| T |
8134582 |
gattgaatatatgtctggtgtccgagacatgctagtgttggatactaacacaacatccacgcatgta |
8134648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University