View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3546_low_22 (Length: 423)
Name: NF3546_low_22
Description: NF3546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3546_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Original strand, 8105182 - 8105587
Alignment:
| Q |
1 |
ttacttagacaatttatgttgtaaatcagaagccccaaactttgattttaaaccctaattttcttcccctccaaaattcagaatataaccttttaaattc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8105182 |
ttacttagacaatttatgttgtaaatcagaagccccaaactttaattttaaaccctaattttcttcccctccaaaattcagaatataaccttttaaattc |
8105281 |
T |
|
| Q |
101 |
ggatccaattttcttcccctcaagtttcaattattacagtctagaatccctaattttgttttccttttcccaatccttactccccaatccatgtgttcat |
200 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8105282 |
ggattcaattttcttcccctcaagtttcaattattacagtccagaatccctaatttcgttttccttttcccaatccttactccccaatccatgtgttcat |
8105381 |
T |
|
| Q |
201 |
cttaattctctcatcctcttcatgttcttcatttaatatggaaacccagaaaatcaatgaaacccaaatcaaaacctctttctcaatcttgttgtgtgtc |
300 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
8105382 |
cttaattctctcatcctcttcgtgttcttcatttaatatggaaacccagaaaatcaatgaaactcaaatcaaaacctctttctcaatcttgttgtgtgtc |
8105481 |
T |
|
| Q |
301 |
tgtgagtaataaaaatcaaaatcttagtttcctctcaatcaaccccacattcgccactattgtatgaaaaggaaagtggagaagatagttcatgtaggtc |
400 |
Q |
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| T |
8105482 |
tctgagtaatcaaaatcaaaatcttagtttcctctcaatcaacctcacattcgccactattgtatggaaaggaaagtggagaagatagttcatgtaggtc |
8105581 |
T |
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| Q |
401 |
tctcat |
406 |
Q |
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|||||| |
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| T |
8105582 |
tctcat |
8105587 |
T |
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Back To:
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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 21481535 - 21481592
Alignment:
| Q |
39 |
actttgattttaaaccctaattttcttcccctccaaaattcagaatataaccttttaa |
96 |
Q |
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||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21481535 |
actttaattctaaaccctaattttcttcccctccaaaattcagaatataaccttttaa |
21481592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 22 - 101
Target Start/End: Original strand, 51028391 - 51028470
Alignment:
| Q |
22 |
taaatcagaagccccaaactttgattttaaaccctaattttcttcccctccaaaattcagaatataaccttttaaattcg |
101 |
Q |
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||||||| || || |||||||||||| |||||||||||||||||||||| ||||||||| ||| ||||| |||||||||| |
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| T |
51028391 |
taaatcaaaaacctcaaactttgattctaaaccctaattttcttccccttcaaaattcataatttaaccatttaaattcg |
51028470 |
T |
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