View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3546_low_24 (Length: 412)
Name: NF3546_low_24
Description: NF3546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3546_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 21 - 404
Target Start/End: Original strand, 37207057 - 37207441
Alignment:
| Q |
21 |
atagtcgcaccaaaagcttggtcgttttcatatttgcatgcgatcctttatctatatatggaaccaaaatcatcaggattatcagnnnnnnngttgtgta |
120 |
Q |
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| T |
37207057 |
atagtcgcaccaaaagcttggtcgttttcatatttgcatgcgatcctttatctatatatggaaccaaaatcatcaggattatcagtttttttgttgtgta |
37207156 |
T |
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| Q |
121 |
tattgttcataaatactgcagaatcaatgtgtaacaatggttgtggcttagctctagcttcctactatttatgggatagttccaacattggttataataa |
220 |
Q |
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| T |
37207157 |
tattgttcataaatactgcagaatcaatgtgtaacaatggttgtggcttagctctagcttcctactatttatgggatagttccgacattggttataataa |
37207256 |
T |
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| Q |
221 |
tatttcaaaccttatgaaatccaaagttctttcaaaacctcaagatattatcatctacaacaaagacagagattct-gtcaaattctccaaaagggttaa |
319 |
Q |
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| T |
37207257 |
tatttcaaaccttatgaaatccgaagttctttcaaaacctcaagatattatcatctacaacaaagacagagattctggtcaaaatctccaaaagggttaa |
37207356 |
T |
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| Q |
320 |
tgttccattctcttgtgaatgccttagtggactgtttcttggtcacacatttcagtacgagctacaaccaggagatacctatgct |
404 |
Q |
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| T |
37207357 |
tgttccattcccttgtgaatgccttagtggactgtttcttggtcacacatttcagtacgagctacaaccaggagatacctatgct |
37207441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 220 - 281
Target Start/End: Original strand, 37200747 - 37200808
Alignment:
| Q |
220 |
atatttcaaaccttatgaaatccaaagttctttcaaaacctcaagatattatcatctacaac |
281 |
Q |
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| T |
37200747 |
atatttcaaacattatgaaatccaatgttctttcaaaacctcaagatatcatcatcaacaac |
37200808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 280
Target Start/End: Complemental strand, 37387243 - 37387183
Alignment:
| Q |
220 |
atatttcaaaccttatgaaatccaaagttctttcaaaacctcaagatattatcatctacaa |
280 |
Q |
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||||||||||| | ||| ||||||| ||| |||||||||||| ||||||| ||| |||||| |
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| T |
37387243 |
atatttcaaacatcatgcaatccaatgttgtttcaaaacctctagatattttcagctacaa |
37387183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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