View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3546_low_25 (Length: 404)
Name: NF3546_low_25
Description: NF3546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3546_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 12 - 387
Target Start/End: Original strand, 41022374 - 41022753
Alignment:
| Q |
12 |
aaagggtagtacctgaataaagttggcaattgaaactgaaaaggaagcagcagcaagtaaaatgccaccaaaaacccaaaattcaggtgttgatgagaag |
111 |
Q |
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| T |
41022374 |
aaagggtagtacctgaataaagttggcaattgaaactgaaaaggaagcagcagcaagtaaaatgccaccaaaaacccaaaattcaggtgttgatgagaag |
41022473 |
T |
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| Q |
112 |
nnnnnnngttgcttagtgtatttaagattgtgagaagagggtcttataagtggccctttgaaaaattcagcaactattgctcccattaatgatatcatca |
211 |
Q |
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| T |
41022474 |
ataaaaagttgcttagtgtatttaagattgtgagaagagggtcttataagtggccctttgaaaaattcagcaactattgctcccattaatgataccatca |
41022573 |
T |
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| Q |
212 |
ttccaattatttggacttggataccagagtttcttaaattcaactctaccttcctgnnnnnnnnnnntcaattaagttgatccatcaaatttatgt---- |
307 |
Q |
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| T |
41022574 |
ttccaattatttggacttggataccagagtttcttaaattcaactctaccttcctgaaaaaaaataatcaattaagttgatccatcaaatttatgtatta |
41022673 |
T |
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| Q |
308 |
attaatgtaacaaaatgaagaatatataaaatagatgacataattttatttatttttacataatcacatataaagttttg |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41022674 |
attaatgtaacaaaatgaagaatatataaaatagatgacataattttatttatttttacataatcacatataaagttttg |
41022753 |
T |
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