View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3546_low_28 (Length: 397)
Name: NF3546_low_28
Description: NF3546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3546_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 14 - 380
Target Start/End: Original strand, 46987963 - 46988329
Alignment:
| Q |
14 |
atatacctctgttcatttgcaacaggaaaagttattttctatttattcaaccttgtgctcttcacatattcagtcacaaaatatgcctgggacatggatc |
113 |
Q |
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| T |
46987963 |
atatacctctgttcatttgcaacaggaaaagttattttctatttattcaaccttgtgctcttcacatattcagtcacaaaatatgcctgggacatggatc |
46988062 |
T |
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| Q |
114 |
ctttgaacagatactcgggaagattagcaattcgtgccatttatttcacaaaagcaatttctctggttttgcaagcaatgcaaattcattttgggattcc |
213 |
Q |
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| T |
46988063 |
ctttgaacagatactcgggaagattagcaattcgtgccatttattttacaaaagcaatttctctggttttgcaagcaatgcaaattcattttgggattcc |
46988162 |
T |
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| Q |
214 |
tcacaagagtactttgtataggcagtttttgaccagtagtgtttcacgagttaatgttttgggatttcgactatatcgagctctacctttcctgtatgaa |
313 |
Q |
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| T |
46988163 |
tcacaagagtactttgtataggcagtttttgaccagtagtgtttcacgagttaatgttttgggatttcgactatatcgagctctacctttcctgtatgaa |
46988262 |
T |
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| Q |
314 |
ttgagatgtgtgctagattggtcttgcacgacaacatctttgactatgtatgactggctaaaggtat |
380 |
Q |
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| T |
46988263 |
ttgagatgtgtgctagattggtcttgcacgacaacatctttgactatgtatgactggctaaaggtat |
46988329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 209 - 380
Target Start/End: Complemental strand, 40175605 - 40175434
Alignment:
| Q |
209 |
attcctcacaagagtactttgtataggcagtttttgaccagtagtgtttcacgagttaatgttttgggatttcgactatatcgagctctacctttcctgt |
308 |
Q |
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| T |
40175605 |
attcctaacaagagcacattgtatcggcagtttttgacaagtgaagtttcacgaatcaactacttaggatatagactttatcgtgctctgccattccttt |
40175506 |
T |
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| Q |
309 |
atgaattgagatgtgtgctagattggtcttgcacgacaacatctttgactatgtatgactggctaaaggtat |
380 |
Q |
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||||||| |||| || || || ||||| ||||| || |||||| | || |||||||||||||||||||||| |
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| T |
40175505 |
atgaattacgatgcgtacttgactggtcctgcacaactacatctctcaccatgtatgactggctaaaggtat |
40175434 |
T |
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