View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3546_low_29 (Length: 391)
Name: NF3546_low_29
Description: NF3546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3546_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 50947075 - 50947418
Alignment:
| Q |
1 |
ttcggcagcgcgcagggtgatagttgtgagatcagttttgctgaagagatatctagcgaaactctgttgaaaatcaatgagtacgtgaagaaacatgcat |
100 |
Q |
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| T |
50947075 |
ttcggcagcgcgcagggtgatagttgtgagatcagttttgctgaagagatatctagcgaaactctgttgaaaatcaatgagtacgtgaagaaacatgcat |
50947174 |
T |
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| Q |
101 |
atgccggagataatgaaaaaagtctccgtagttgggaccttgagttcatcgaagttgatcgccacacactgtttgcgctagtcttggttag-ttgttttt |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
50947175 |
atgccggagataatgaaaaaagtctccgtagttgggaccttgagttcatcgaagttgatcgccacacactgtttgcgctagtcttggttagttttttttt |
50947274 |
T |
|
| Q |
200 |
nnnnnnnnnnnnnnatgtcatatttatattcttacatgtaacatcatgatgttagtttaattaatttggagttaaaatttgagattctgtttgctatggg |
299 |
Q |
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| T |
50947275 |
tttctttttttctcatgtcatatttatattcttacatgtaacatcatgatgttagtttaattaatttggagttaaaatttgagattctgtttgctatgtg |
50947374 |
T |
|
| Q |
300 |
aaatttatgttgagatataatcaatttcctaacttggttggtta |
343 |
Q |
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| T |
50947375 |
aaatttatgttgagatataatcaatttcctaacttcgttggtta |
50947418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 25 - 199
Target Start/End: Original strand, 50956611 - 50956785
Alignment:
| Q |
25 |
tgtgagatcagttttgctgaagagatatctagcgaaactctgttgaaaatcaatgagtacgtgaagaaacatgcatatgccggagataatgaaaaaagtc |
124 |
Q |
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| T |
50956611 |
tgtgagatcagttttgtagtagagatatccagccaaactctgttgaagatcaatgaatatgtaaagaagcatgcagatgctggagataatgaaaaaagtc |
50956710 |
T |
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| Q |
125 |
tccgtagttgggaccttgagttcatcgaagttgatcgccacacactgtttgcgctagtcttggttagttgttttt |
199 |
Q |
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| T |
50956711 |
tccgtaattgggaccttgaattcatcaaagttgatcgccacactttgtttgccctagtcttggttagttattttt |
50956785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 27 - 198
Target Start/End: Original strand, 15854960 - 15855131
Alignment:
| Q |
27 |
tgagatcagttttgctgaagagatatctagcgaaactctgttgaaaatcaatgagtacgtgaagaaacatgcatatgccggagataatgaaaaaagtctc |
126 |
Q |
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|||||||||||||| |||||||||||||| ||||||||||||| ||||| ||||| || ||||| |||| | |||| |||||||||||||||||||| |
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| T |
15854960 |
tgagatcagttttgaagaagagatatctagaaaaactctgttgaagatcaaagagtatgtaaagaagcatgaagatgctagagataatgaaaaaagtctc |
15855059 |
T |
|
| Q |
127 |
cgtagttgggaccttgagttcatcgaagttgatcgccacacactgtttgcgctagtcttggttagttgtttt |
198 |
Q |
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| T |
15855060 |
cgtatttgggatcaagagttcatcaaagttgatcaccgtacattgtttgctatagtcttggttagttatttt |
15855131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 120 - 193
Target Start/End: Original strand, 50963653 - 50963726
Alignment:
| Q |
120 |
aagtctccgtagttgggaccttgagttcatcgaagttgatcgccacacactgtttgcgctagtcttggttagtt |
193 |
Q |
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| T |
50963653 |
aagtctccgttcctgggaccttgagttcatcaaagttgatcgccacacattgtttgccctagtcttggttagtt |
50963726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 242 - 338
Target Start/End: Original strand, 50956807 - 50956904
Alignment:
| Q |
242 |
atcatgatgttagtttaattaatttggagttaaaatttgagattctgtttgctatg-ggaaatttatgttgagatataatcaatttcctaacttggtt |
338 |
Q |
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|||||| ||||||||||| || |||||||| |||||||||||||| |||||||||| |||||||| ||||| | ||||||||||||||||||||| |
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| T |
50956807 |
atcatggtgttagtttaagtattttggagtcaaaatttgagattcggtttgctatgttaaaatttatattgagctggaatcaatttcctaacttggtt |
50956904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 28 - 104
Target Start/End: Original strand, 50963546 - 50963622
Alignment:
| Q |
28 |
gagatcagttttgctgaagagatatctagcgaaactctgttgaaaatcaatgagtacgtgaagaaacatgcatatgc |
104 |
Q |
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| T |
50963546 |
gagatcagttttgaaaaggagatatctagcaaaactctgttgaagatcaatgagtacgtgaagaagcatgcagatgc |
50963622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 333
Target Start/End: Original strand, 15855230 - 15855310
Alignment:
| Q |
252 |
tagtttaattaatttggagttaaaatttgagattctgtttgctatgggaaatttatgttgagatataatcaatttcctaact |
333 |
Q |
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|||||||| || |||||||||||||||| ||||||||||||| ||| ||||||||| ||||||| ||||||| | |||||| |
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| T |
15855230 |
tagtttaagtattttggagttaaaattt-agattctgtttgcaatgtgaaatttatactgagatagaatcaatatactaact |
15855310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 277
Target Start/End: Original strand, 50963770 - 50963816
Alignment:
| Q |
231 |
ttacatgtaacatcatgatgttagtttaattaatttggagttaaaat |
277 |
Q |
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| T |
50963770 |
ttacatgtaacataatgatgttagtttatgtattttggagttaaaat |
50963816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 342
Target Start/End: Original strand, 50963816 - 50963864
Alignment:
| Q |
294 |
tatgggaaatttatgttgagatataatcaatttcctaacttggttggtt |
342 |
Q |
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|||| ||||||||| |||||||| ||||||| || |||||||||||||| |
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| T |
50963816 |
tatgtgaaatttatattgagatagaatcaatatcttaacttggttggtt |
50963864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 153; Significance: 5e-81; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 27 - 339
Target Start/End: Original strand, 33630380 - 33630696
Alignment:
| Q |
27 |
tgagatcagttttgctgaagagatatctagcgaaactctgttgaaaatcaatgagtacgtgaagaaacatgcatatgccggagataatgaaaaaagtctc |
126 |
Q |
| |
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|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| | || ||||||||||||||||||||| |
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| T |
33630380 |
tgagatcagttttgttgaagagatatctagtgaaactctgttgaaaatcaatgagtatgtgaagaaacatgcagaagctggagataatgaaaaaagtctc |
33630479 |
T |
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| Q |
127 |
cgtagttgggaccttgagttcatcgaagttgatcgccacacactgtttgcgctagtcttggttagttgtttttnnnnnnnnnnnnnna-tgtcatattta |
225 |
Q |
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|||| |||||||||||||||||| ||||||||||||||| || ||||||| |||||||| || |||| ||||| | |||||| ||| |
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| T |
33630480 |
cgtaattgggaccttgagttcatagaagttgatcgccacgcattgtttgccctagtcttagtaagttatttttgcttttctcatgtcacagtcatactta |
33630579 |
T |
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| Q |
226 |
tattcttacatgtaacatcatgatgttagtttaattaatttggagttaaaatttgagattctgtttgctatgggaaattta---tgttgagatataatca |
322 |
Q |
| |
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|||| ||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||| |
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| T |
33630580 |
tatttttacatgtaacatcaacatgttagtttgattattttggagttaaaatttgagattctgtttgctatgtgaaatttatgttgttgagatagaatca |
33630679 |
T |
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| Q |
323 |
atttcctaacttggttg |
339 |
Q |
| |
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|| || ||||||||||| |
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| T |
33630680 |
atatcgtaacttggttg |
33630696 |
T |
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