View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3546_low_32 (Length: 376)
Name: NF3546_low_32
Description: NF3546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3546_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 3551058 - 3550684
Alignment:
| Q |
1 |
acatgtatgcataaaggattaatcctccttccatcataggctgaatattgtatctggttttcataagttacaatgaaataacatgaattcataaaatgaa |
100 |
Q |
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| T |
3551058 |
acatgtatgcataaaggattaatcctccttccatcataggctgaatattgtatctggttttcataagttacaatgaaataacatgaattcgtaaaatgaa |
3550959 |
T |
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| Q |
101 |
tcacattttgtagcttccagactacaacaaacccctcttacaaggaggacaccatagatgacaaaatgcttcaaaccttttggattttgtgtattcatct |
200 |
Q |
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| T |
3550958 |
tcacattttgtagcttccagactacaacaaacccctcttacaaggaggacaccatagatgacaaaatgcttcaaaccttttggattttgtgtattcatct |
3550859 |
T |
|
| Q |
201 |
ttttatgtacnnnnnnngaaagaatagatgatgaa--------gaataattcttctttctcttctctccctcttttgaagctatatagaatttcttcg-t |
291 |
Q |
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|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
3550858 |
ttttatgtacaaaaaaagaaagaatagatgatgaagaataaatgaataattcttctttctcttctctccctcttttgaagctatatagaatttctttgtt |
3550759 |
T |
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| Q |
292 |
tttttagcttaataatcaatggcgtgatgttggacttctcaaacctcctatattttcaaggtaggacactttctt |
366 |
Q |
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| T |
3550758 |
tttttatcttaataatcaatggcgtgatgttggacttctcaaacctcctatattttcaaggtaggacgctttctt |
3550684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 3574131 - 3574007
Alignment:
| Q |
1 |
acatgtatgcataaaggattaatcctccttccatcataggctgaatattgtatctggttttcataagttacaatgaaataacatgaattcataaaatgaa |
100 |
Q |
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| T |
3574131 |
acatgtatgcctgaaggattaattctgctgccatcatagtctgaatat-gtatttggttattttaaattgcaatggaataacgtgaattcataaaaagaa |
3574033 |
T |
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| Q |
101 |
tcacattttgtagcttccagactaca |
126 |
Q |
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| T |
3574032 |
tcacattttgtagcttcccgactaca |
3574007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 84 - 174
Target Start/End: Complemental strand, 3560035 - 3559945
Alignment:
| Q |
84 |
tgaattcataaaatgaatcacattttgtagcttccagactacaacaaacccctcttacaaggaggacaccatagatgacaaaatgcttcaa |
174 |
Q |
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| T |
3560035 |
tgaattcataaaaataatcacattttgtagctccatgactacaacatatccctcttacaaggagggcatcataaatggcaaaatgcttcaa |
3559945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 243 - 338
Target Start/End: Original strand, 3568024 - 3568122
Alignment:
| Q |
243 |
tcttctttctcttctctccctcttttgaagctatatagaatttcttcgttttt---tagcttaataatcaatggcgtgatgttggacttctcaaacctc |
338 |
Q |
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| T |
3568024 |
tcttctttctctcctctccctcttttgaaggattatggcatttctcagtgtttatttagcttaataatcaatggtgtgatgttggacttctcatacctc |
3568122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 117 - 210
Target Start/End: Original strand, 3558698 - 3558791
Alignment:
| Q |
117 |
ccagactacaacaaacccctcttacaaggaggacaccat-agatgacaaaatgcttcaaaccttttggattttgtgtattcatctttttatgtac |
210 |
Q |
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|||||||||||||||||| | |||||||| ||||| ||| | |||||||||||||||||||| ||| |||| | | |||| |||||||||||||| |
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| T |
3558698 |
ccagactacaacaaaccctt-ttacaaggtggacatcatgaaatgacaaaatgcttcaaacccttttgattatttatattaatctttttatgtac |
3558791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 91 - 149
Target Start/End: Original strand, 3567875 - 3567933
Alignment:
| Q |
91 |
ataaaatgaatcacattttgtagcttccagactacaacaaacccctcttacaaggagga |
149 |
Q |
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|||||| ||||||||||||||||| ||||||||||||||| |||||||||||| |||| |
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| T |
3567875 |
ataaaaagaatcacattttgtagcagccagactacaacaaaaccctcttacaagaagga |
3567933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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