View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3546_low_34 (Length: 362)
Name: NF3546_low_34
Description: NF3546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3546_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 7 - 213
Target Start/End: Complemental strand, 32753153 - 32752950
Alignment:
| Q |
7 |
cccacaaatggcaccattatgcttttcatttgtcatcttttatttatagctggttatatgctgctaagtggatctgtcttctgcgattctcctgatgtga |
106 |
Q |
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| T |
32753153 |
cccacaaatggcaccattatgcttttcatttgtcatcttttatttatagctggttatatgct---aagtggatctgtcttctgcgattctcctgatgtga |
32753057 |
T |
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| Q |
107 |
agcgactgcagcaaacaatttcctttgnnnnnnncaatgtggaaaacaaacaaaataacaataattggtcaacaatggaatctataatcccagttaatgc |
206 |
Q |
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| T |
32753056 |
agcgactgcagcaaacaatttccattgtttttatcaatgaggaaaacaaacaaaataacaataattggtcaacaatggaatctataatcccagttaatgc |
32752957 |
T |
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| Q |
207 |
accgtag |
213 |
Q |
| |
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||||||| |
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| T |
32752956 |
accgtag |
32752950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 223 - 351
Target Start/End: Complemental strand, 32752892 - 32752764
Alignment:
| Q |
223 |
tcaatttgaggcagagtgaatcagatgcataatgttagttgctcacgtctttcactcttttatgtttgatcacatccaatttatgtgccatgttcgacca |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32752892 |
tcaatttgaggcagagtgaatcagatgcataatgttagttgctcacgtctttcactcttttatgtttgatcacatccaatttatgtgccatgttcgacca |
32752793 |
T |
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| Q |
323 |
atgtttcttctaaattcaccaatattcat |
351 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
32752792 |
atgtttcttctaaattcaccaatattcat |
32752764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 223 - 339
Target Start/End: Original strand, 3284504 - 3284620
Alignment:
| Q |
223 |
tcaatttgaggcagagtgaatcagatgcataatgttagttgctcacgtctttcactcttttatgtttgatcacatccaatttatgtgccatgttcgacca |
322 |
Q |
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||||||| | |||||||||||||| ||||||| ||||||||||| | ||||||||||||| ||||| || || |||||| ||||| ||||| ||||||| |
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| T |
3284504 |
tcaatttcatgcagagtgaatcagttgcataacgttagttgctcgcatctttcactctttcatgttcgaagacctccaatctatgtaccatgctcgacca |
3284603 |
T |
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| Q |
323 |
atgtttcttctaaattc |
339 |
Q |
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| ||||||||| |||| |
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| T |
3284604 |
acctttcttctatattc |
3284620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 133
Target Start/End: Original strand, 3282423 - 3282504
Alignment:
| Q |
49 |
tttatagctggttatatgctgctaagtggatctgtcttctgcgattctcctgatgtgaagcgactgcagcaaacaatttcctttg |
133 |
Q |
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||||||||||| |||||||| |||||||||||||||| |||||||||||||||| |||| ||| || | |||||||||||||| |
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| T |
3282423 |
tttatagctggctatatgct---aagtggatctgtcttccgcgattctcctgatgtaaagccactacaacgaacaatttcctttg |
3282504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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