View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3546_low_35 (Length: 357)
Name: NF3546_low_35
Description: NF3546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3546_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 33 - 341
Target Start/End: Original strand, 32544131 - 32544439
Alignment:
| Q |
33 |
gctttaagagttaactctgattgcatcttaggtgaaaaaatagcactggtaccagaacattaatggagaaaacatatttactagaacatttatggagtaa |
132 |
Q |
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| T |
32544131 |
gctttaagagttaactctgattgcatcttaggtgaaaaaatagcactggtaccagaacatttatggagaaaacatatttactagaacatttatggagtaa |
32544230 |
T |
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| Q |
133 |
atagcactgggtacctaatagtgtattatgctaatactatgactagaaaattacttatgtaaattacttaacactttcttaaacacttcacacttcttaa |
232 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32544231 |
atagcactgggtacctaatagtgtattatgctaatcctatgactagaaaattacttatgtaaattacttaacactttcttaaacactttacacttcttaa |
32544330 |
T |
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| Q |
233 |
aaccacgtggaaaccaaaaatcaactttaccatgtaccaacaccaaaagaaagagcaagacagaaagaggggaagggggtggatacatgttgatgctgat |
332 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32544331 |
aaccacgtggaaaccaaaaatcaactttaccatgtaccaacaccaaaagaaagagcaagacagaaagaggggaagggggtggatacatgttgatgctgat |
32544430 |
T |
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| Q |
333 |
ccagaaaat |
341 |
Q |
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||||||||| |
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| T |
32544431 |
ccagaaaat |
32544439 |
T |
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