View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3546_low_36 (Length: 354)
Name: NF3546_low_36
Description: NF3546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3546_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 22 - 339
Target Start/End: Complemental strand, 37462810 - 37462494
Alignment:
| Q |
22 |
acgtaagttttggagtaagaaagtacctcagaaaagtaaataacaagccaccctgcaatacaaaaagcacttgacactctcattgcctgcatatatattc |
121 |
Q |
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| T |
37462810 |
acgtaagttttggagtaagaaagtacctcagaaaagtaaataacaagccaccctgcaatacaaaaagcacttgacactctcattgcctgcatatatattc |
37462711 |
T |
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| Q |
122 |
caaaacaaacttttttatgtatattccacataataaagatgattaacaattcggaagttaattccaaaataactagcatcgttttcctgaaattaccccc |
221 |
Q |
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| T |
37462710 |
caaaacaaacttttt-atgaatattccacataataaagatgattaacaattcggaagttaattccaaaataactagcatcgttttcctgaaattaccccc |
37462612 |
T |
|
| Q |
222 |
tttcttccaacgaaatcagcaataggtccacttgttattgcgccaatcatcgcaccaaatgtcaagatggagccaaacaaggagtactgcatttagtcaa |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
37462611 |
tttcttccaacgaaatcagcaataggtccacttgttattgcgccaatcatcgcaccaaatgttaagatggagccaaacaaggagtactgcatttagtcaa |
37462512 |
T |
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| Q |
322 |
tccacaaaaagcacagaa |
339 |
Q |
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||||||||||||| |||| |
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| T |
37462511 |
tccacaaaaagcaaagaa |
37462494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 46 - 314
Target Start/End: Original strand, 37591328 - 37591599
Alignment:
| Q |
46 |
acctcagaaaagtaaataacaagccaccctgcaatacaaaaagcacttgacactctcattgcctgcatatatattccaaaacaaacttttttatg---ta |
142 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| || |||||| |||||||| || | |
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| T |
37591328 |
acctcagaaaagtaaataacaagccaccctgcaatactgaaagcgcttgacactctcattgcctgcatatatgttgcaaaaccaactttttattgacctt |
37591427 |
T |
|
| Q |
143 |
tattccacataataaagatgattaacaattcggaagttaattccaaaataactagcatcgttttcctgaaattaccccctttcttccaacgaaatcagca |
242 |
Q |
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| T |
37591428 |
gaataccctaaataaaaataattaaacatttggaagttaattccaaaacaaccatcataattttccagaaattaccccctttcgtccaacgaattcggca |
37591527 |
T |
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| Q |
243 |
ataggtccacttgttattgcgccaatcatcgcaccaaatgtcaagatggagccaaacaaggagtactgcatt |
314 |
Q |
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| T |
37591528 |
ataggtccactagttattgcaccaatcatcgcaccaaaagtcaagatggagccaaacaaggagtactgcatt |
37591599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 16 - 313
Target Start/End: Complemental strand, 37585269 - 37584974
Alignment:
| Q |
16 |
aatatcacgtaagttttggagtaagaaagtacctcagaaaagtaaataacaagccaccctgcaatacaaaaagcacttgacactctcattgcctgcatat |
115 |
Q |
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|||||||| |||||||| |||||||| ||| ||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||| | |
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| T |
37585269 |
aatatcacaaaagttttgtagtaagaa----cctgagaaaagtaaataacaagccaccctacaatacagaaacagcttgacactctcattgcctgcattt |
37585174 |
T |
|
| Q |
116 |
atattccaaaacaaacttttt---tatgtatattccacataataaagatgattaacaattcggaagttaattccaaaataactagcatcgttttcctgaa |
212 |
Q |
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||||| |||||| |||||||| ||| | | | ||| |||||| || |||||||||| ||| |||||| || || || | || |||||||||| |
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| T |
37585173 |
atattgcaaaactaactttttatttatcttgaatacaccaaataaa-ataattaacaatttggaggttaatccctgaacgaccataataattttcctgaa |
37585075 |
T |
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| Q |
213 |
attaccccctttcttccaacgaaatcagcaataggtccacttgttattgcgccaatcatcgcaccaaatgtcaagatggagccaaacaaggagtactgca |
312 |
Q |
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|||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||| |
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| T |
37585074 |
tttactccctttcgtccaacgaaatcggcaataggtccacttgttattgcgccaatcatcgcaccgaaagtcaagatggagccaaagaaggagtactgca |
37584975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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