View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3546_low_37 (Length: 349)
Name: NF3546_low_37
Description: NF3546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3546_low_37 |
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Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 15 - 339
Target Start/End: Original strand, 50934884 - 50935208
Alignment:
| Q |
15 |
aagaagcattttccaaaagttgaagtgaagatgaatacctttgcaaaatactttcctggattagtagcacactgaattattgtcaaaagtgcgttaccga |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50934884 |
aagaagcattttccaaaagttgaagtgaagatgaatacctttgcaaaatactttcctggattagtagcacactgaattattgtcaaaagtgcgttaccga |
50934983 |
T |
|
| Q |
115 |
aattccctgaagcttcattccttactgcctgatatgatttcagcttgaaaatcaatacttcaatagataaatgaaattgaataaataagattaatgtgat |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
50934984 |
aattccctgaagcttcattccttactgcctgatatgatttcagcttgaaaatcaatacttcaatagataaatgaagttgaataaataagattaatgtgat |
50935083 |
T |
|
| Q |
215 |
caaaataccttcttcaatgagtgaccatacatgtcatgataataagaactgactgcagccaaatgtgcggcactcctttcactgaatatttggacaaaag |
314 |
Q |
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| T |
50935084 |
caaaataccttcttcaatgagtgaccatacatgtcatgataataagaactgattgcagccaaatgtgcggcactcctttcactgaatatttggacaaaag |
50935183 |
T |
|
| Q |
315 |
tcttttcatcagttccgagtttctt |
339 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
50935184 |
tcttttcatcagttccgagtttctt |
50935208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 161; Significance: 8e-86; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 22 - 339
Target Start/End: Complemental strand, 26553007 - 26552686
Alignment:
| Q |
22 |
attttccaaaagttgaagtgaagatgaat----acctttgcaaaatactttcctggattagtagcacactgaattattgtcaaaagtgcgttaccgaaat |
117 |
Q |
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||||||| |||||| |||||||||||||| |||||||||||||||||| ||||||||||||| || | | ||||||||||||||||| |||||||| |
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| T |
26553007 |
attttcctaaagttaaagtgaagatgaatgaatacctttgcaaaatactttgctggattagtagcgcattcagttattgtcaaaagtgcgagaccgaaat |
26552908 |
T |
|
| Q |
118 |
tccctgaagcttcattccttactgcctgatatgatttcagcttgaaaatcaatacttcaatagataaatgaaattgaataaataagattaatgtgatcaa |
217 |
Q |
| |
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|||| || ||||||||| |||||||||||||||| || | ||||||| | |||| |||||||||||||||| |||||| ||| |||||| |||||||| |
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| T |
26552907 |
tcccggatgcttcattctttactgcctgatatgaatttaacttgaaattgaatatctcaatagataaatgaagttgaattgataggattaaagtgatcaa |
26552808 |
T |
|
| Q |
218 |
aataccttcttcaatgagtgaccatacatgtcatgataataagaactgactgcagccaaatgtgcggcactcctttcactgaatatttggacaaaagtct |
317 |
Q |
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|||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||| |||||||||||||||||||||||||| |||| |
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| T |
26552807 |
gttacctttttcaatgagtgaccatacatgtcatgataatatgaactgacggcagccaaatgcgcgctgctcctttcactgaatatttggacaaatgtct |
26552708 |
T |
|
| Q |
318 |
tttcatcagttccgagtttctt |
339 |
Q |
| |
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||||||| ||||| |||||||| |
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| T |
26552707 |
tttcatcggttcccagtttctt |
26552686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 15 - 339
Target Start/End: Complemental strand, 26559098 - 26558772
Alignment:
| Q |
15 |
aagaagcattttccaaaagttgaagtgaagatgaatacctttgcaaaatactttcctggattagtagcacactgaattattgtcaaaagtgcgttaccga |
114 |
Q |
| |
|
|||||||||||||| |||||||||| | || | |||||||||| ||||||||| |||||||||||||||| ||||||||||||| ||||| ||||| |
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| T |
26559098 |
aagaagcattttcctaaagttgaagggctgagggatacctttgcgaaatactttgctggattagtagcacattgaattattgtcaccagtgctcgaccga |
26558999 |
T |
|
| Q |
115 |
aattccctgaagcttcattccttactgcctgatatgatttcagcttgaaaatcaatacttcaatagataaatgaaattgaa--taaataagattaatgtg |
212 |
Q |
| |
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||||||| || | ||||||| |||||||||||||| | |||||| ||||| | |||| ||||||||| ||||| ||||| | ||||||| ||| || |
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| T |
26558998 |
aattcccggatgtttcattctttactgcctgatataaattcagcatgaaattatataccacaatagatagatgaagttgaagtttgataagatcaatttg |
26558899 |
T |
|
| Q |
213 |
atcaaaataccttcttcaatgagtgaccatacatgtcatgataataagaactgactgcagccaaatgtgcggcactcctttcactgaatatttggacaaa |
312 |
Q |
| |
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||| | ||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||| | | |||||| ||||||||||||||||||||| |
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| T |
26558898 |
atccagttaccttcttcagtgagtgaccatacatgtcatgataataagaattgacggcagccaaatgcgtgccactccgttcactgaatatttggacaaa |
26558799 |
T |
|
| Q |
313 |
agtcttttcatcagttccgagtttctt |
339 |
Q |
| |
|
|||||||||||| | |||||||||||| |
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| T |
26558798 |
agtcttttcatcggatccgagtttctt |
26558772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 47 - 339
Target Start/End: Complemental strand, 26564826 - 26564534
Alignment:
| Q |
47 |
gaatacctttgcaaaatactttcctggattagtagcacactgaattattgtcaaaagtgcgttaccgaaattccctgaagcttcattccttactgcctga |
146 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||||| || ||||||||| |||||||| ||| |||||||| || | ||||||| ||||||||||| |
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| T |
26564826 |
gaatacctttgcaaaatactttgctggattatgagcacattgtattattgtccgaagtgcgtgaccaaaattccccgatgtttcattctttactgcctga |
26564727 |
T |
|
| Q |
147 |
tatgatttcagcttgaaaatcaatacttcaatagataaatgaaattgaataaataagattaatgtgatcaaaataccttcttcaatgagtgaccatacat |
246 |
Q |
| |
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||||| | ||||||||| | ||||| |||||||||||| ||||||| || ||||| || || |||| | ||||||||||||||||||||| ||||| |
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| T |
26564726 |
tatgaagttagcttgaaattgaataccaaaatagataaatgcaattgaaataaaaagatgaaagtaatcacattaccttcttcaatgagtgaccgtacat |
26564627 |
T |
|
| Q |
247 |
gtcatgataataagaactgactgcagccaaatgtgcggcactcctttcactgaatatttggacaaaagtcttttcatcagttccgagtttctt |
339 |
Q |
| |
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|||||||||||||| |||||| ||| ||||||||||| | || | ||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
26564626 |
gtcatgataataagcactgacggcaaccaaatgtgcgccgcttcgttcactgaatatttggataaaagtcttttcatcagttccgagtttctt |
26564534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 269 - 342
Target Start/End: Original strand, 45507504 - 45507577
Alignment:
| Q |
269 |
gcagccaaatgtgcggcactcctttcactgaatatttggacaaaagtcttttcatcagttccgagtttcttctc |
342 |
Q |
| |
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|||||||| ||||||||||||| || ||||||||||| |||||||| || ||||||||||| ||||||||||| |
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| T |
45507504 |
gcagccaactgtgcggcactccgttggctgaatatttgcacaaaagttttctcatcagttcccagtttcttctc |
45507577 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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