View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3546_low_41 (Length: 323)
Name: NF3546_low_41
Description: NF3546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3546_low_41 |
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| [»] scaffold0045 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 94 - 307
Target Start/End: Complemental strand, 32792991 - 32792775
Alignment:
| Q |
94 |
aagggaaagaccaaatgtttatatcttaaagcttgtttaaaagaaatgtgaaagggaccgtttaagtt---actgccgccatatatagtttgtttgtatg |
190 |
Q |
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| T |
32792991 |
aagggaaagatcaaatgtttatatcttaaagcttgtttaaaagaaatgtgaaagggaccgtttaagttgtgactgccgccatatatagtttgtttgtatg |
32792892 |
T |
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| Q |
191 |
ttacgtacagtttgtctcacgtttatcaatgtcagatcctaggtagcttctttcgaataatagcatatatagccacgtggatgacctccagaatccaaga |
290 |
Q |
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| T |
32792891 |
ttacgtacagtttgtctcacgtttatcaatgtcagatcctaggtagcttctttcgaataatagcatatatagccacgtggatgacctccagaatccaaga |
32792792 |
T |
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| Q |
291 |
aagagcaagaaagaagc |
307 |
Q |
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| T |
32792791 |
aagagcaagtaagaagc |
32792775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 21354357 - 21354319
Alignment:
| Q |
3 |
gaacaaatgtataatatatccaaggttcggagttcaaac |
41 |
Q |
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| T |
21354357 |
gaacaaatgtataaaatatgcaaggttcggagttcaaac |
21354319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 42244 - 42280
Alignment:
| Q |
8 |
aatgtataatatatccaaggttcggagttcaaacctt |
44 |
Q |
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| T |
42244 |
aatgtataatatatgcaaggttcggagtttaaacctt |
42280 |
T |
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