View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3546_low_42 (Length: 308)
Name: NF3546_low_42
Description: NF3546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3546_low_42 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 15 - 291
Target Start/End: Complemental strand, 32072876 - 32072599
Alignment:
| Q |
15 |
aaaacattacaaaccattttccaaacaatgagaaactcactttaaatctctagaatgtcttcaaatgcacaaatatcttatatcatattctattcatatt |
114 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
|
|
| T |
32072876 |
aaaacattacaaaccattt-ccaaacaatgagaaactcactttaaatctctagaatgtcttcaaatgcacaaatattttatatcatattctattcatagt |
32072778 |
T |
|
| Q |
115 |
tttccctagtaatctcatttaataaaggtcaaatcataaaatattatttgaatcaaatccattc-ttgatttccaactacgaacaaacaaaaattcccag |
213 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
32072777 |
tttccctactaatctcatttaataaaggtcaaatcataaaatattatttgaatcaaatccattcgttgatttccaactacgaacagacaaaaattcccag |
32072678 |
T |
|
| Q |
214 |
cttactaattcaatcaagtttagaaagaataagat-nnnnnnnctaaatgtataaagttaatttggaaaatgtgcattc |
291 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
32072677 |
cttactaattgaatcaagtttagaaagaataagataaaaaaaactaaatgtataaagttaatttggaaactgtgcattc |
32072599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University