View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3546_low_44 (Length: 291)
Name: NF3546_low_44
Description: NF3546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3546_low_44 |
 | |
|
| [»] scaffold0055 (7 HSPs) |
| | |
|
| [»] scaffold0052 (9 HSPs) |
| | |
|
| [»] scaffold0021 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0055 (Bit Score: 262; Significance: 1e-146; HSPs: 7)
Name: scaffold0055
Description:
Target: scaffold0055; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 20 - 281
Target Start/End: Complemental strand, 51793 - 51532
Alignment:
| Q |
20 |
gctaccacatccaaggaaggcagcaggcgcgcaaattacccaatcctaacacggggaggtagtgacaataaataacaataccgggctcattgagtctggt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51793 |
gctaccacatccaaggaaggcagcaggcgcgcaaattacccaatcctaacacggggaggtagtgacaataaataacaataccgggctcattgagtctggt |
51694 |
T |
|
| Q |
120 |
aattggaatgagtacaatctaaatcccttaacgaggatccattggagggcaagtctggtgccagcagccgcggtaattccagctccaatagcgtatattt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51693 |
aattggaatgagtacaatctaaatcccttaacgaggatccattggagggcaagtctggtgccagcagccgcggtaattccagctccaatagcgtatattt |
51594 |
T |
|
| Q |
220 |
aagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgatcggtccgcctatg |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51593 |
aagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgatcggtccgcctatg |
51532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 20 - 281
Target Start/End: Complemental strand, 67328 - 67067
Alignment:
| Q |
20 |
gctaccacatccaaggaaggcagcaggcgcgcaaattacccaatcctaacacggggaggtagtgacaataaataacaataccgggctcattgagtctggt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
67328 |
gctaccacatccaaggaaggcagcaggcgcgcaaattacccaatcctaacacggggaggtagtgacaataaataacaataccgggctcattgagtctggt |
67229 |
T |
|
| Q |
120 |
aattggaatgagtacaatctaaatcccttaacgaggatccattggagggcaagtctggtgccagcagccgcggtaattccagctccaatagcgtatattt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
67228 |
aattggaatgagtacaatctaaatcccttaacgaggatccattggagggcaagtctggtgccagcagccgcggtaattccagctccaatagcgtatattt |
67129 |
T |
|
| Q |
220 |
aagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgatcggtccgcctatg |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
67128 |
aagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgatcggtccgcctatg |
67067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #3
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 20 - 281
Target Start/End: Complemental strand, 70248 - 69987
Alignment:
| Q |
20 |
gctaccacatccaaggaaggcagcaggcgcgcaaattacccaatcctaacacggggaggtagtgacaataaataacaataccgggctcattgagtctggt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
70248 |
gctaccacatccaaggaaggcagcaggcgcgcaaattacccaatcctaacacggggaggtagtgacaataaataacaataccgggctcattgagtctggt |
70149 |
T |
|
| Q |
120 |
aattggaatgagtacaatctaaatcccttaacgaggatccattggagggcaagtctggtgccagcagccgcggtaattccagctccaatagcgtatattt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
70148 |
aattggaatgagtacaatctaaatcccttaacgaggatccattggagggcaagtctggtgccagcagccgcggtaattccagctccaatagcgtatattt |
70049 |
T |
|
| Q |
220 |
aagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgatcggtccgcctatg |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
70048 |
aagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgatcggtccgcctatg |
69987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #4
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 32 - 281
Target Start/End: Original strand, 3988 - 4237
Alignment:
| Q |
32 |
aaggaaggcagcaggcgcgcaaattacccaatcctaacacggggaggtagtgacaataaataacaataccgggctcattgagtctggtaattggaatgag |
131 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3988 |
aaggaaggcagcaggcgcgcaaattacccaatcgtaacacggggaggtagtgacaataaataacaataccgggctcattgagtctggtaattggaatgag |
4087 |
T |
|
| Q |
132 |
tacaatctaaatcccttaacgaggatccattggagggcaagtctggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcag |
231 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4088 |
tacaatctaaatcccttaatgaggatccattggagggcaagtctggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcag |
4187 |
T |
|
| Q |
232 |
ttaaaaagctcgtagttggaccttgggttgggtcgatcggtccgcctatg |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4188 |
ttaaaaagctcgtagttggaccttgggttgggtcgatcggtccgcctatg |
4237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #5
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 66 - 281
Target Start/End: Complemental strand, 42499 - 42284
Alignment:
| Q |
66 |
taacacggggaggtagtgacaataaataacaataccgggctcattgagtctggtaattggaatgagtacaatctaaatcccttaacgaggatccattgga |
165 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42499 |
taacacggggaggtagtgacaataaataacaataccgggctcattgagtctggtaattggaatgagtacaatctaaatcccttaacgaggatccattgga |
42400 |
T |
|
| Q |
166 |
gggcaagtctggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttggaccttgggttgggtc |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42399 |
gggcaagtctggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttggaccttgggttgggtc |
42300 |
T |
|
| Q |
266 |
gatcggtccgcctatg |
281 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
42299 |
gatcggtccgcctatg |
42284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #6
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 69 - 281
Target Start/End: Complemental strand, 33188 - 32976
Alignment:
| Q |
69 |
cacggggaggtagtgacaataaataacaataccgggctcattgagtctggtaattggaatgagtacaatctaaatcccttaacgaggatccattggaggg |
168 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33188 |
cacggggaggtagtgacaataaataacaatatcgggctcattgagtctggtaattggaatgagtacaatctaaatcccttaacgaggatccattggaggg |
33089 |
T |
|
| Q |
169 |
caagtctggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgat |
268 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33088 |
caagtctggtgccagctgccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgat |
32989 |
T |
|
| Q |
269 |
cggtccgcctatg |
281 |
Q |
| |
|
||||||||||||| |
|
|
| T |
32988 |
cggtccgcctatg |
32976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 222 - 281
Target Start/End: Complemental strand, 80592 - 80533
Alignment:
| Q |
222 |
gttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgatcggtccgcctatg |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
80592 |
gttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgatcggtccgcctatg |
80533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052 (Bit Score: 262; Significance: 1e-146; HSPs: 9)
Name: scaffold0052
Description:
Target: scaffold0052; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 20 - 281
Target Start/End: Complemental strand, 26318 - 26057
Alignment:
| Q |
20 |
gctaccacatccaaggaaggcagcaggcgcgcaaattacccaatcctaacacggggaggtagtgacaataaataacaataccgggctcattgagtctggt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26318 |
gctaccacatccaaggaaggcagcaggcgcgcaaattacccaatcctaacacggggaggtagtgacaataaataacaataccgggctcattgagtctggt |
26219 |
T |
|
| Q |
120 |
aattggaatgagtacaatctaaatcccttaacgaggatccattggagggcaagtctggtgccagcagccgcggtaattccagctccaatagcgtatattt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26218 |
aattggaatgagtacaatctaaatcccttaacgaggatccattggagggcaagtctggtgccagcagccgcggtaattccagctccaatagcgtatattt |
26119 |
T |
|
| Q |
220 |
aagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgatcggtccgcctatg |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26118 |
aagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgatcggtccgcctatg |
26057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 20 - 281
Target Start/End: Complemental strand, 28092 - 27831
Alignment:
| Q |
20 |
gctaccacatccaaggaaggcagcaggcgcgcaaattacccaatcctaacacggggaggtagtgacaataaataacaataccgggctcattgagtctggt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28092 |
gctaccacatccaaggaaggcagcaggcgcgcaaattacccaatcctaacacggggaggtagtgacaataaataacaataccgggctcattgagtctggt |
27993 |
T |
|
| Q |
120 |
aattggaatgagtacaatctaaatcccttaacgaggatccattggagggcaagtctggtgccagcagccgcggtaattccagctccaatagcgtatattt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27992 |
aattggaatgagtacaatctaaatcccttaacgaggatccattggagggcaagtctggtgccagcagccgcggtaattccagctccaatagcgtatattt |
27893 |
T |
|
| Q |
220 |
aagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgatcggtccgcctatg |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27892 |
aagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgatcggtccgcctatg |
27831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #3
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 20 - 281
Target Start/End: Complemental strand, 48700 - 48439
Alignment:
| Q |
20 |
gctaccacatccaaggaaggcagcaggcgcgcaaattacccaatcctaacacggggaggtagtgacaataaataacaataccgggctcattgagtctggt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48700 |
gctaccacatccaaggaaggcagcaggcgcgcaaattacccaatcctaacacggggaggtagtgacaataaataacaataccgggctcattgagtctggt |
48601 |
T |
|
| Q |
120 |
aattggaatgagtacaatctaaatcccttaacgaggatccattggagggcaagtctggtgccagcagccgcggtaattccagctccaatagcgtatattt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48600 |
aattggaatgagtacaatctaaatcccttaacgaggatccattggagggcaagtctggtgccagcagccgcggtaattccagctccaatagcgtatattt |
48501 |
T |
|
| Q |
220 |
aagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgatcggtccgcctatg |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48500 |
aagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgatcggtccgcctatg |
48439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #4
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 20 - 281
Target Start/End: Complemental strand, 51292 - 51031
Alignment:
| Q |
20 |
gctaccacatccaaggaaggcagcaggcgcgcaaattacccaatcctaacacggggaggtagtgacaataaataacaataccgggctcattgagtctggt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51292 |
gctaccacatccaaggaaggcagcaggcgcgcaaattacccaatcctaacacggggaggtagtgacaataaataacaataccgggctcattgagtctggt |
51193 |
T |
|
| Q |
120 |
aattggaatgagtacaatctaaatcccttaacgaggatccattggagggcaagtctggtgccagcagccgcggtaattccagctccaatagcgtatattt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51192 |
aattggaatgagtacaatctaaatcccttaacgaggatccattggagggcaagtctggtgccagcagccgcggtaattccagctccaatagcgtatattt |
51093 |
T |
|
| Q |
220 |
aagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgatcggtccgcctatg |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51092 |
aagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgatcggtccgcctatg |
51031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #5
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 20 - 282
Target Start/End: Complemental strand, 18820 - 18558
Alignment:
| Q |
20 |
gctaccacatccaaggaaggcagcaggcgcgcaaattacccaatcctaacacggggaggtagtgacaataaataacaataccgggctcattgagtctggt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18820 |
gctaccacatccaaggaaggcagcaggcgcgcaaattacccaatcctaacacggggaggtagtgacaataaataacaataccgggctcattgagtctggt |
18721 |
T |
|
| Q |
120 |
aattggaatgagtacaatctaaatcccttaacgaggatccattggagggcaagtctggtgccagcagccgcggtaattccagctccaatagcgtatattt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
|
|
| T |
18720 |
aattggaatgagtacaatctaaatcccttaacgaggatccattggagggcaagtctggtgccagcagccgcggtcattccagctccaatagcgtatatgt |
18621 |
T |
|
| Q |
220 |
aagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgatcggtccgcctatga |
282 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
18620 |
aagttgttgcagttaaaaagctagtagttggacattgggttgggtcgatcggtccgcctatga |
18558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #6
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 32 - 281
Target Start/End: Complemental strand, 80547 - 80298
Alignment:
| Q |
32 |
aaggaaggcagcaggcgcgcaaattacccaatcctaacacggggaggtagtgacaataaataacaataccgggctcattgagtctggtaattggaatgag |
131 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
80547 |
aaggaaggcagcaggcgcgcaaattacccaatcgtaacacggggaggtagtgacaataaataacaataccgggctcattgagtctggtaattggaatgag |
80448 |
T |
|
| Q |
132 |
tacaatctaaatcccttaacgaggatccattggagggcaagtctggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcag |
231 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
80447 |
tacaatctaaatcccttaatgaggatccattggagggcaagtctggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcag |
80348 |
T |
|
| Q |
232 |
ttaaaaagctcgtagttggaccttgggttgggtcgatcggtccgcctatg |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
80347 |
ttaaaaagctcgtagttggaccttgggttgggtcgatcggtccgcctatg |
80298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #7
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 69 - 281
Target Start/End: Original strand, 62877 - 63089
Alignment:
| Q |
69 |
cacggggaggtagtgacaataaataacaataccgggctcattgagtctggtaattggaatgagtacaatctaaatcccttaacgaggatccattggaggg |
168 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
62877 |
cacggggaggtagtgacaataaataacaatatcgggctcattgagtctggtaattggaatgagtacaatctaaatcccttaacgaggatccattggaggg |
62976 |
T |
|
| Q |
169 |
caagtctggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgat |
268 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
62977 |
caagtctggtgccagctgccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgat |
63076 |
T |
|
| Q |
269 |
cggtccgcctatg |
281 |
Q |
| |
|
||||||||||||| |
|
|
| T |
63077 |
cggtccgcctatg |
63089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #8
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 4340 - 4168
Alignment:
| Q |
20 |
gctaccacatccaaggaaggcagcaggcgcgcaaattacccaatcctaacacggggaggtagtgacaataaataacaataccgggctcattgagtctggt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4340 |
gctaccacatccaaggaaggcagcaggcgcgcaaattacccaatcctaacacggggaggtagtgacaataaataacaataccgggctcattgagtctggt |
4241 |
T |
|
| Q |
120 |
aattggaatgagtacaatctaaatcccttaacgaggatccattggagggcaagtctggtgccagcagccgcgg |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4240 |
aattggaatgagtacaatctaaatcccttaacgaggatccattggagggcaagtctggtgccagcagccgcgg |
4168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #9
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 135 - 281
Target Start/End: Complemental strand, 7033 - 6887
Alignment:
| Q |
135 |
aatctaaatcccttaacgaggatccattggagggcaagtctggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcagtta |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7033 |
aatctaaatcccttaacgaggatccattggagggcaagtctggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcagtta |
6934 |
T |
|
| Q |
235 |
aaaagctcgtagttggaccttgggttgggtcgatcggtccgcctatg |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6933 |
aaaagctcgtagttggaccttgggttgggtcgatcggtccgcctatg |
6887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 20 - 281
Target Start/End: Complemental strand, 46962 - 46701
Alignment:
| Q |
20 |
gctaccacatccaaggaaggcagcaggcgcgcaaattacccaatcctaacacggggaggtagtgacaataaataacaataccgggctcattgagtctggt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46962 |
gctaccacatccaaggaaggcagcaggcgcgcaaattacccaatcctaacacggggaggtagtgacaataaataacaataccgggctcattgagtctggt |
46863 |
T |
|
| Q |
120 |
aattggaatgagtacaatctaaatcccttaacgaggatccattggagggcaagtctggtgccagcagccgcggtaattccagctccaatagcgtatattt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46862 |
aattggaatgagtacaatctaaatcccttaacgaggatccattggagggcaagtctggtgccagcagccgcggtaattccagctccaatagcgtatattt |
46763 |
T |
|
| Q |
220 |
aagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgatcggtccgcctatg |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46762 |
aagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgatcggtccgcctatg |
46701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 152 - 281
Target Start/End: Original strand, 13700809 - 13700938
Alignment:
| Q |
152 |
gaggatccattggagggcaagtctggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttgga |
251 |
Q |
| |
|
|||| ||||||||||| |||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
13700809 |
gaggctccattggaggacaagtctggtgctagcagccgcgataattacagctccaatagcgtatatttaagttgttgtagttaaaaagcttgtagttgga |
13700908 |
T |
|
| Q |
252 |
ccttgggttgggtcgatcggtccgcctatg |
281 |
Q |
| |
|
||| ||||| |||||||||||||||||||| |
|
|
| T |
13700909 |
cctcgggttaggtcgatcggtccgcctatg |
13700938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 81 - 249
Target Start/End: Original strand, 8125518 - 8125686
Alignment:
| Q |
81 |
gtgacaataaataacaataccgggctcattgagtctggtaattggaatgagtacaatctaaatcccttaacgaggatccattggagggcaagtctggtgc |
180 |
Q |
| |
|
|||| |||||||||||||| | |||||||||||||||||||| |||||||||||| ||||| | ||||||||||| |||| ||| || | ||||| |
|
|
| T |
8125518 |
gtgataataaataacaatagtagactcattgagtctggtaattgaaatgagtacaatataaattctttaacgaggatttattgaaggataaatttggtgt |
8125617 |
T |
|
| Q |
181 |
cagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttg |
249 |
Q |
| |
|
||||||| ||||||||| |||| ||||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
8125618 |
cagcagctgcggtaattttagcttcaatagcgtatatttaaattgttgcaattaaaaagctcgtagttg |
8125686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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