View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3546_low_46 (Length: 284)
Name: NF3546_low_46
Description: NF3546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3546_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 114; Significance: 7e-58; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 145 - 266
Target Start/End: Complemental strand, 36706583 - 36706462
Alignment:
| Q |
145 |
attaccttattaccaccatgcattaaaatgcaatattgtcctcaacaatttgtctttgccctccatagaaatctataaaatacctctagtttcatcttat |
244 |
Q |
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| T |
36706583 |
attaccttattacgaccatgcattaaaatgcaatattgtcctcaacaattagtctttgccctccatagaaatctataaaatacctctagtttcatcttat |
36706484 |
T |
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| Q |
245 |
gtagagaggcataactaagcat |
266 |
Q |
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| T |
36706483 |
gtagagaggcataactaagcat |
36706462 |
T |
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Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 39182971 - 39183053
Alignment:
| Q |
3 |
gcaacgaataaataggagccgtaggatatggattggattg-cttttactttgacttttatgtattttgaaattataatacaac |
84 |
Q |
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| T |
39182971 |
gcaacaaataaatgggagccgtaggatatggattggattgccatttactttgacttttattaattttgaaaatataatacaac |
39183053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 138
Target Start/End: Original strand, 12346615 - 12346735
Alignment:
| Q |
19 |
agccgtaggatatggattggattg-cttttactttgacttttatgtattttgaaattataatacaactatttcccatgaattgtgtgtcattcgcgtgta |
117 |
Q |
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| T |
12346615 |
agccctagaatatggattggattggcatttactttgacttttatttattttgaaaatataatataattacctttcatgtttcgtgtgtcattcgcgtgta |
12346714 |
T |
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| Q |
118 |
tatttatcgcactatatagca |
138 |
Q |
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| T |
12346715 |
tatttctcgcaccatatagca |
12346735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 33625834 - 33625766
Alignment:
| Q |
19 |
agccgtaggatatggattggattg-cttttactttgacttttatgtattttgaaattataatacaacta |
86 |
Q |
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| T |
33625834 |
agccgtaggatatggattggattggcatttactttgacttttatttattttgaaaatataatacaacta |
33625766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 33623552 - 33623484
Alignment:
| Q |
19 |
agccgtaggatatggattggattg-cttttactttgacttttatgtattttgaaattataatacaacta |
86 |
Q |
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| T |
33623552 |
agccttagaatatggattgaattggcatttactttgacttttatttattttgaaaatataatacaacta |
33623484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 12498019 - 12497960
Alignment:
| Q |
28 |
atatggattggattg-cttttactttgacttttatgtattttgaaattataatacaacta |
86 |
Q |
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||||||||| ||||| | ||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
12498019 |
atatggattagattggcatttactttgacttttatttattttgaaaatataatacaacta |
12497960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 136
Target Start/End: Complemental strand, 4942779 - 4942668
Alignment:
| Q |
26 |
ggatatggattggattgct-tttactttgacttttatgtattttgaaattataatacaactatttcccatgaattgtgtgtcattcgcgtgtatatttat |
124 |
Q |
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|||||||||||||||||| |||||||| |||||||| |||| |||| ||||||||||| || | |||| | |||||||| ||||||||| ||| | |
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| T |
4942779 |
ggatatggattggattgccatttacttttacttttattaatttcgaaaatataatacaaccatctatcatgtttagtgtgtcaagcgcgtgtatgtttct |
4942680 |
T |
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| Q |
125 |
cgcactatatag |
136 |
Q |
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| T |
4942679 |
cacactatatag |
4942668 |
T |
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