View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3546_low_48 (Length: 277)
Name: NF3546_low_48
Description: NF3546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3546_low_48 |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 17 - 269
Target Start/End: Complemental strand, 19212612 - 19212360
Alignment:
| Q |
17 |
agcaccaaccattgcaatgaaacatgggtagagtccaaagaaaaacagctccttcattcattccccacataagtgctgcactaatagacatgagatacgc |
116 |
Q |
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| T |
19212612 |
agcaccaaccattgcaatgaaacatgggtagagtccaaagaaaaacagctccttcattcattccccacataagtgctgcactaagagacatgagatacgc |
19212513 |
T |
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| Q |
117 |
cccacggtgatgtaatacaacacctttcggactagaagtcgtcccagatgtgtaacctaatgcaatgctctgccattcatcctccggaggtttccaatcg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
19212512 |
cccacggtgatgtaatacaacacctttcggactagaagtcgttccagatgtgtaacctaatgcaatgctctgccattcatcctctggaggtttccaatcg |
19212413 |
T |
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| Q |
217 |
tactcagggtcaccattttgaagaaagtcctcgtaatcgatagctcctttgct |
269 |
Q |
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| T |
19212412 |
tactcagggtcaccactttgaagaaagtcctcgtaattgatagctcctttgct |
19212360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 17 - 248
Target Start/End: Original strand, 50257079 - 50257310
Alignment:
| Q |
17 |
agcaccaaccattgcaatgaaacatgggtagagtccaaagaaaaacagctccttcattcattccccacataagtgctgcactaatagacatgagatacgc |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||| |||||| ||||||||||||||| |
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| T |
50257079 |
agcaccaaccattgcaatgaaacatgggtagagtccaaagatatacagctccttcattcattccccaaataagtgcaccactaagagacatgagatacgc |
50257178 |
T |
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| Q |
117 |
cccacggtgatgtaatacaacacctttcggactagaagtcgtcccagatgtgtaacctaatgcaatgctctgccattcatcctccggaggtttccaatcg |
216 |
Q |
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||||||||||| || || |||||||||||||||| ||| |||||||| |||||||| || |||||||||||||| |||||||| || || ||||||| | |
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| T |
50257179 |
tccacggtgatgcaaaaccacacctttcggactagcagtggtcccagacgtgtaacccaaagcaatgctctgccactcatcctctggtggcttccaattg |
50257278 |
T |
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| Q |
217 |
tactcagggtcaccattttgaagaaagtcctc |
248 |
Q |
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|| |||||||||||| || ||||||||||||| |
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| T |
50257279 |
tattcagggtcaccacttcgaagaaagtcctc |
50257310 |
T |
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